GEO help: Mouse over screen elements for information.
Status
Public on May 17, 2008
Title
NIA Mouse 44K Microarray v3.0 (Whole Genome 60-mer Oligo) [Agilent 015087]
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Mus musculus Manufacturer
Agilent
Manufacture protocol
As descripted by Agilent manuals under Platform_web_link
Support
glass
Coating
aminosilane
Description
The Agilent's Mouse Development Oligo Microarray 3.0 is in 4x44K HD format on a glass slide. Each 43,451-feature microarray contains 41,999 (60-mer) probes representing all empirical and predicted mouse genes and transcripts based on NIA Mouse Gene Index. The annotation is based on NCBI Mouse RefSeq and GeneBank mRNA searches. A set of synthetic spike-in control probes are included to control variations in target labeling and hybridization, and to provide more quantitative information on transcripts. You may login into http://lgsun.grc.nia.nih.gov/ANOVA/ for updated or previous versions of annotations.
Web link
http://www.chem.agilent.com/scripts/generic.asp?lpage=11617&indcol=N&prodcol=Y Submission date
May 15, 2008
Last update date
Aug 20, 2015
Contact name
Minoru S.H. Ko
E-mail(s)
kom@mail.nih.gov Phone
410-558-8359
Organization name
NIH
Department
National Institute on Aging
Lab
Lab of Genetics
Street address
251 Bayview Blvd, Suite 100, 10C
City
Baltimore
State/province
MD
ZIP/Postal code
21224
Country
USA
Samples (1467)
GSM290305 , GSM290306 , GSM290307 , GSM290308 , GSM290309 , GSM290310
GSM290311 ,
GSM290312 ,
GSM290313 ,
GSM290314 ,
GSM290315 ,
GSM290316 ,
GSM290317 ,
GSM290318 ,
GSM290319 ,
GSM290320 ,
GSM290321 ,
GSM290322 ,
GSM290323 ,
GSM290324 ,
GSM290325 ,
GSM290326 ,
GSM290327 ,
GSM290328 ,
GSM290329 ,
GSM290330 ,
GSM290331 ,
GSM290332 ,
GSM290333 ,
GSM290334 ,
GSM290335 ,
GSM290336 ,
GSM290337 ,
GSM290338 ,
GSM290339 ,
GSM290340 ,
GSM290341 ,
GSM290342 ,
GSM290343 ,
GSM290344 ,
GSM290345 ,
GSM290346 ,
GSM290347 ,
GSM290348 ,
GSM290349 ,
GSM290350 ,
GSM290351 ,
GSM290352 ,
GSM290353 ,
GSM290354 ,
GSM290355 ,
GSM290356 ,
GSM290357 ,
GSM290358 ,
GSM290359 ,
GSM290360 ,
GSM290361 ,
GSM290362 ,
GSM290363 ,
GSM290364 ,
GSM290365 ,
GSM290366 ,
GSM290367 ,
GSM290368 ,
GSM290369 ,
GSM290370 ,
GSM290371 ,
GSM290372 ,
GSM290373 ,
GSM290374 ,
GSM290375 ,
GSM290376 ,
GSM290377 ,
GSM290378 ,
GSM290379 ,
GSM290380 ,
GSM290381 ,
GSM290382 ,
GSM290383 ,
GSM290384 ,
GSM290385 ,
GSM290386 ,
GSM290387 ,
GSM290388 ,
GSM290389 ,
GSM290390 ,
GSM290391 ,
GSM290392 ,
GSM339570 ,
GSM339571 ,
GSM339572 ,
GSM339573 ,
GSM339574 ,
GSM339575 ,
GSM339576 ,
GSM339577 ,
GSM343097 ,
GSM343098 ,
GSM343099 ,
GSM343100 ,
GSM343101 ,
GSM343102 ,
GSM343103 ,
GSM343104 ,
GSM343105 ,
GSM343106 ,
GSM343107 ,
GSM343108 ,
GSM343109 ,
GSM343110 ,
GSM343111 ,
GSM343112 ,
GSM343113 ,
GSM343114 ,
GSM343115 ,
GSM343116 ,
GSM343117 ,
GSM343118 ,
GSM343119 ,
GSM343120 ,
GSM343121 ,
GSM343122 ,
GSM343123 ,
GSM343124 ,
GSM343125 ,
GSM343126 ,
GSM343127 ,
GSM343128 ,
GSM343129 ,
GSM343130 ,
GSM343131 ,
GSM343132 ,
GSM343133 ,
GSM343134 ,
GSM343135 ,
GSM343136 ,
GSM364193 ,
GSM364194 ,
GSM364195 ,
GSM364196 ,
GSM364197 ,
GSM364198 ,
GSM364199 ,
GSM364200 ,
GSM364201 ,
GSM364202 ,
GSM364203 ,
GSM364204 ,
GSM364205 ,
GSM364206 ,
GSM364207 ,
GSM364208 ,
GSM364209 ,
GSM364210 ,
GSM364211 ,
GSM364212 ,
GSM364213 ,
GSM364214 ,
GSM364215 ,
GSM364216 ,
GSM364217 ,
GSM364218 ,
GSM364219 ,
GSM364220 ,
GSM364221 ,
GSM364222 ,
GSM364223 ,
GSM364224 ,
GSM364225 ,
GSM364226 ,
GSM364227 ,
GSM364228 ,
GSM364229 ,
GSM364230 ,
GSM364231 ,
GSM364232 ,
GSM364233 ,
GSM364234 ,
GSM364235 ,
GSM364236 ,
GSM364237 ,
GSM364238 ,
GSM364239 ,
GSM364240 ,
GSM364241 ,
GSM364242 ,
GSM364243 ,
GSM364244 ,
GSM364245 ,
GSM364246 ,
GSM364247 ,
GSM364248 ,
GSM364249 ,
GSM364250 ,
GSM364251 ,
GSM364252 ,
GSM364253 ,
GSM364254 ,
GSM364255 ,
GSM364256 ,
GSM364257 ,
GSM364258 ,
GSM364259 ,
GSM364260 ,
GSM364261 ,
GSM364262 ,
GSM364263 ,
GSM364264 ,
GSM364265 ,
GSM364266 ,
GSM364267 ,
GSM364268 ,
GSM364269 ,
GSM364270 ,
GSM364271 ,
GSM364272 ,
GSM364273 ,
GSM364274 ,
GSM364275 ,
GSM364276 ,
GSM364277 ,
GSM364278 ,
GSM364279 ,
GSM364280 ,
GSM364281 ,
GSM364282 ,
GSM364283 ,
GSM364284 ,
GSM364285 ,
GSM364286 ,
GSM364287 ,
GSM364288 ,
GSM364289 ,
GSM364290 ,
GSM364291 ,
GSM364292 ,
GSM364293 ,
GSM364294 ,
GSM364295 ,
GSM364296 ,
GSM364297 ,
GSM364298 ,
GSM364299 ,
GSM364300 ,
GSM364301 ,
GSM364302 ,
GSM364303 ,
GSM364304 ,
GSM364305 ,
GSM364306 ,
GSM364307 ,
GSM364308 ,
GSM364309 ,
GSM364310 ,
GSM364311 ,
GSM364312 ,
GSM364313 ,
GSM364314 ,
GSM364315 ,
GSM364316 ,
GSM364317 ,
GSM364318 ,
GSM364319 ,
GSM364320 ,
GSM364321 ,
GSM364322 ,
GSM364323 ,
GSM364324 ,
GSM364325 ,
GSM364326 ,
GSM364327 ,
GSM364328 ,
GSM364329 ,
GSM364330 ,
GSM364331 ,
GSM364332 ,
GSM364333 ,
GSM364334 ,
GSM364335 ,
GSM364336 ,
GSM364338 ,
GSM364339 ,
GSM364340 ,
GSM364341 ,
GSM364342 ,
GSM364343 ,
GSM364344 ,
GSM364345 ,
GSM364346 ,
GSM364347 ,
GSM364348 ,
GSM364349 ,
GSM364350 ,
GSM364351 ,
GSM364352 ,
GSM364353 ,
GSM364354 ,
GSM364355 ,
GSM364356 ,
GSM364357 ,
GSM364358 ,
GSM364359 ,
GSM364360 ,
GSM364361 ,
GSM364362 ,
GSM364363 ,
GSM364364 ,
GSM364365 ,
GSM364366 ,
GSM364367 ,
GSM364368 ,
GSM364369 ,
GSM364370 ,
GSM364371 ,
GSM364372 ,
GSM364373 ,
GSM364374 ,
GSM364375 ,
GSM364376 ,
GSM364377 ,
GSM364378 ,
GSM364379 ,
GSM364380 ,
GSM364381 ,
GSM364382 ,
GSM364383 ,
GSM364384 ,
GSM364385 ,
GSM364386 ,
GSM364387 ,
GSM364388 ,
GSM364389 ,
GSM364390 ,
GSM364391 ,
GSM364392 ,
GSM364393 ,
GSM364394 ,
GSM364395 ,
GSM364396 ,
GSM364397 ,
GSM364398 ,
GSM364399 ,
GSM364400 ,
GSM364401 ,
GSM364402 ,
GSM364403 ,
GSM364404 ,
GSM364405 ,
GSM364406 ,
GSM364407 ,
GSM364408 ,
GSM364409 ,
GSM371921 ,
GSM371922 ,
GSM371923 ,
GSM371924 ,
GSM371925 ,
GSM371926 ,
GSM371927 ,
GSM371928 ,
GSM371929 ,
GSM371930 ,
GSM371931 ,
GSM371932 ,
GSM371933 ,
GSM371934 ,
GSM371935 ,
GSM371936 ,
GSM371937 ,
GSM371938 ,
GSM371939 ,
GSM371940 ,
GSM371941 ,
GSM371942 ,
GSM371943 ,
GSM371944 ,
GSM371945 ,
GSM371946 ,
GSM371947 ,
GSM371948 ,
GSM375633 ,
GSM375634 ,
GSM404572 ,
GSM404573 ,
GSM404574 ,
GSM404575 ,
GSM404576 ,
GSM404577 ,
GSM404578 ,
GSM404579 ,
GSM404580 ,
GSM404581 ,
GSM404582 ,
GSM404583 ,
GSM404584 ,
GSM404585 ,
GSM404586 ,
GSM404587 ,
GSM404588 ,
GSM404589 ,
GSM404590 ,
GSM404591 ,
GSM404592 ,
GSM404593 ,
GSM404594 ,
GSM404595 ,
GSM404596 ,
GSM404597 ,
GSM404598 ,
GSM404599 ,
GSM404600 ,
GSM404601 ,
GSM404602 ,
GSM404603 ,
GSM404604 ,
GSM404605 ,
GSM404606 ,
GSM404607 ,
GSM404608 ,
GSM404609 ,
GSM404610 ,
GSM404611 ,
GSM404612 ,
GSM404613 ,
GSM404614 ,
GSM404615 ,
GSM404616 ,
GSM404617 ,
GSM404618 ,
GSM404619 ,
GSM404620 ,
GSM404621 ,
GSM404622 ,
GSM404623 ,
GSM404624 ,
GSM404625 ,
GSM404626 ,
GSM404627 ,
GSM404628 ,
GSM404629 ,
GSM404630 ,
GSM404631 ,
GSM404632 ,
GSM404633 ,
GSM404634 ,
GSM404635 ,
GSM404636 ,
GSM404637 ,
GSM404638 ,
GSM404639 ,
GSM404640 ,
GSM404641 ,
GSM404642 ,
GSM404643 ,
GSM404644 ,
GSM404645 ,
GSM404646 ,
GSM404647 ,
GSM404648 ,
GSM404649 ,
GSM404650 ,
GSM404651 ,
GSM404652 ,
GSM404653 ,
GSM404654 ,
GSM404655 ,
GSM404656 ,
GSM404657 ,
GSM404658 ,
GSM404659 ,
GSM404660 ,
GSM404661 ,
GSM404662 ,
GSM404663 ,
GSM404664 ,
GSM404665 ,
GSM404666 ,
GSM404667 ,
GSM404668 ,
GSM404669 ,
GSM404670 ,
GSM404671 ,
GSM404672 ,
GSM404673 ,
GSM404674 ,
GSM404675 ,
GSM404676 ,
GSM404677 ,
GSM404678 ,
GSM404679 ,
GSM404680 ,
GSM404681 ,
GSM404682 ,
GSM404683 ,
GSM404684 ,
GSM404685 ,
GSM404686 ,
GSM404687 ,
GSM404688 ,
GSM404689 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (50)
GSE11523 Defining Developmental Potency and Cell Lineage Trajectories by Expression Profiling of Differentiating Mouse ES Cells
GSE13472 Functional Heterogeneity of Embryonic Stem Cells Revealed Through Translational Amplification of an Early Endodermal Transcript
GSE13609 Database for mRNA Half-Life of 19,977 Genes Obtained by DNA Microarray Analysis of Pluripotent and Differentiating Mouse
GSE14559 Timed induction of 50 transcription factors in ES cells reveals a common mechanism to initiate differentiations
GSE14870 Requirement for Shh and Fox family genes at different stages in sweat gland development (E15.5)
GSE14871 Requirement for Shh and Fox family genes at different stages in sweat gland development (E16.5)
GSE14872 Requirement for Shh and Fox family genes at different stages in sweat gland development (E17.5)
GSE14873 Requirement for Shh and Fox family genes at different stages in sweat gland development (P1)
GSE14874 Requirement for Shh and Fox family genes at different stages in sweat gland development (P3)
GSE14876 Requirement for Shh and Fox family genes at different stages in sweat gland development (P5)
GSE14877 Requirement for Shh and Fox family genes at different stages in sweat gland development (Adult)
GSE14907 Requirement for Shh and Fox family genes at different stages in sweat gland development
GSE15028 DNA microarray analysis of R1-9 ES cells
GSE16148 Timed induction of 10 transcription factors - ES time series data
GSE16375 Uncovering early response of gene regulatory networks in ES cells by systematic induction of transcription factors
GSE19309 Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair-1
GSE19312 Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair-2
GSE19364 Dkk4 and Eda regulate distinctive developmental mechanisms for subtypes of mouse hair
GSE19806 Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity (1 of 2)
GSE19814 Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity (2 of 2)
GSE22151 Responsiveness of genes to manipulation of transcription factors in ES cells is associated with chromatin structure and tissue specificity
GSE24532 B-type lamins differentially associate with specific genes during differentiation without directly affecting their expression
GSE24563 Transcriptional Activation by Oct4 Is Sufficient for the Maintenance and Induction of Pluripotency
GSE26162 Rejuvenation of pluripotent stem cells by frequent activation of Zscan4, Part B
GSE26278 Rejuvenation of pluripotent stem cells by frequent activation of Zscan4
GSE26520 Principal components of embryonic stem cell pluripotency
GSE28436 Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells Part A
GSE30917 Collection of mouse ES cell lines engineered for the forced induction of transcription factors (part A)
GSE31374 Collection of mouse ES cell lines engineered for the forced induction of transcription factors (part B)
GSE31381 Collection of mouse ES cell lines engineered for the forced induction of transcription factors
GSE31423 Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells Part B
GSE31435 Zscan4 transiently reactivates early embryonic genes during the generation of induced pluripotent stem cells
GSE32347 FoxA1 regulates sweat secretion through Best2 and Nkcc1 ion transporters
GSE34671 Two-cell developmental block is due to the lack of cytoplasmic lattices in mouse antral oocytes
GSE36399 Silencing or amplification of endocannabinoid signaling in blastocysts via CB1 compromises trophoblast cell migration
GSE40495 Emergence of undifferentiated colonies from mouse embryonic stem cells undergoing differentiation by retinoic acid treatment.
GSE40763 Frizzled6 deficiency disrupts the differentiation process of nail development
GSE43971 Systematic discovery of potent cell differentiation-directing transcription factors
GSE50859 Cascade regulation of sweat gland development by Wnt, Eda and Shh pathways [beta-catenin knockout]
GSE50862 Cascade regulation of sweat gland development by Wnt, Eda and Shh pathways [Dkk4 transgenic]
GSE50863 Cascade regulation of sweat gland development by Wnt, Eda and Shh pathways
GSE63896 Generation of neural crest cells by direct lineage conversion
GSE73715 Identification of potassium and chloride channels in eccrine sweat glands
GSE77143 Foxc1 ablated mice are anhidrotic and recapitulate features of human miliaria sweat retention disorder
GSE78949 Induction of cells expressing markers of GABAergic neurons by transcription factors (mRNA)
GSE78951 Induction of cells expressing markers of GABAergic neurons by transcription factors
GSE86294 miRNAs are required for post-induction stage sweat gland development [mRNA]
GSE86296 miRNAs are required for post-induction stage sweat gland development
GSE87742 Identification of Eda targets during Meibomian gland development
GSE125481 Skewed macrophage polarization in aging skeletal muscle
Relations Alternative to
GPL20836
Data table header descriptions ID Feature Number
OLIGO_NAME NIA Universal Oligo Name
GB_ACC GenBank accession
GB_ACC RefSeq accession
SEQUENCE Sequence of oligonucleotide probe
Entrez_Gene_ID Entrez gene id
GENE_SYMBOL Gene symbols Associated with the Oligo
GENE_ALIAS Old Gene symbols
GENE_DESCRIPTION Gene Description
SPOT_ID
Data table ID OLIGO_NAME GB_ACC GB_ACC SEQUENCE Entrez_Gene_ID GENE_SYMBOL GENE_ALIAS GENE_DESCRIPTION SPOT_ID 12
Z00076986-1
NM_175398.3 NM_175398.3 AAATCTGTAGCTTTTTGCTAGGCAATGTACCTATCTCAGAACGATTAATCAATGGGGTCA
109050
6530418L21Rik
RIKEN cDNA 6530418L21 gene
13
Z00047877-1
NM_172951.1 NM_172951.1 AAAGAACGTACTCTGGAGATTCAAGTTCTCTCAGCTTAAGGGATCCTCAGATGACGGGAA
268534
Sntg2
2210008K22Rik|9530013L23|BB121248
syntrophin, gamma 2
14
Z00023788-1
NM_019820.3 NM_019820.3 ACATTCTGCAGGTAAACTGGGACAGTCAGAAGGCAGGAATCCTGCCGTCCATCTGTGCCA
56410
Cbln3
cerebellin 3 precursor protein
15
Z00025586-1
NM_008299.1 NM_008299.1 TGGTCTTTATGCCTGTTGTAAATATCTGTATGCCTTTGGCACTTATTAAACTTAATCCTG
15504
Dnajb3
Hsj3|MSJ-1|Msj1
DnaJ (Hsp40) homolog, subfamily B, member 3
16
Z00070727-1
NM_001039231.1 NM_001039231.1 TCTTCAAATGGAAGACAGAACTCATACTGGAGAGAAAAGCTATGAAGGTGTGCAATGTAA
626391
C230055K05Rik
RIKEN cDNA C230055K05 gene
17
Z00024788-1
NM_010686.2 NM_010686.2 AAGAGAATCTGGCCAAGCAATAGTTCCTGGTGTCAGTTTATACTCAGCTGTCAGACGACA
16792
Laptm5
E3
lysosomal-associated protein transmembrane 5
18
Z00001998-1
NM_028975.3 NM_028975.3 GCCTAGCCTCCTTATCACTATGTTTTAAGAATACAACTTTGTAGAGCAATAAAGTGACTA
67878
Tmem33
1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83
transmembrane protein 33
19
Z00075391-1
NM_178047.2 NM_178047.2 GTGAAGAGGGTGAGTGCCCTTTATGGTGGTAATTCTCCCTATCTCTGGGCATGTTGATGT
192212
Prom2
AI507243|MGC31164|Prom-rp
prominin 2
20
Z00077212-1
XM_283860.4 TACATCCAAGCCCTGTGTTACCGGTACTATTATCTGAACTCCGACAAATTCGACAATGTC
329702
Dcst2
Gm760
DC-STAMP domain containing 2
21
Z00023635-1
BC016110.1 AGATTTGGACAGTGTGTGTACCTGATAATACTTTTCACAGCACAGTGCCAGTGTTGTACA
56873
Lmbr1
1110048D14Rik|AU017641
limb region 1
22
Z00034289-1
AK220553.1 GTGCAAAGAAATATATGATTTCAAACACATTTCTGAACTGCCAGGGCAAGAAAGTATAGA
74053
Grip1
4931400F03Rik|KIAA4223|eb|mKIAA4223
glutamate receptor interacting protein 1
23
Z00007926-1
NM_199310.1 NM_199310.1 CTCGGATAGAATGGATCAGTCAAGTGAGCCATGTTTTCTCTCCCTCTTCTGGATCTTCAT
269336
Ccdc32
Gm631|MGC60849
coiled-coil domain containing 32
24
Z00018358-1
NM_008964.2 NM_008964.2 TTGATGTCACTGCTGTTATAAATGCAATCAGACCAAATGAAATTCATTCTCTAGGAAGTC
19217
Ptger2
EP2|Ptgerep2
prostaglandin E receptor 2 (subtype EP2)
25
Z00056638-1
NM_013571.1 NM_013571.1 GGAAGTGGGGAAGGAGTACGGCGCGTCCTGGCATCCGTCAGCCTGGGGAAGGAAGTCGGC
16706
Ksr1
AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb
kinase suppressor of ras 1
26
Z00048849-1
NM_001011532.1 NM_001011532.1 ACTCTCCTCAGTAACAGAAGGTCTATATCTTTCTACGCCTGTGCAACCCAACTCGGTTTT
259151
Olfr1037
MOR171-52|MOR256-34P
olfactory receptor 1037
27
Z00033034-1
AB160427.1 XM_894855.2 ATCAGTCTTCTCTATAATCACTGAGTGCAGAGGACCTCACAATGGCGTGCATCTCTATCA
LOC629915
PREDICTED: Mus musculus similar to Ig heavy chain V region 102 precursor (LOC629915), mRNA
28
Z00037217-1
NM_147094.1 NM_147094.1 GCAGATCCGACAAGGAATATTCCATTTGATCTGTCCCCACAAAATCAATTCTTCTGCAAT
259098
Olfr606
MOR17-2
olfactory receptor 606
29
Z00031175-1
NM_031188.1 NM_031188.1 GCATACTATTATCCTGGCCTCTGACAAAAGAGAAAAGATAGAAGATAATGGCAACTTTAG
17840
Mup1
Ltn-1|Lvtn-1|Mup-1|Mup-a|Up-1
major urinary protein 1
30
Z00021325-1
XM_203999.7 TGCACAGATGTTATCTAAGCATTAAGTAATTGTAGAACATAGGACTGCTAATCTCAGTTC
76089
Rapgef2
5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP
Rap guanine nucleotide exchange factor (GEF) 2
31
Z00058159-1
TCGGTACTACAAAACCATCAGTATAGGCTTCAAGATGCCCAAGGAGGCCATTGAGGGGAC
NO INFORMATION
42034 6996 Kbytes .Supplementary data files not provided
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