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Platform GPL7098 Query DataSets for GPL7098
Status Public on Jul 25, 2008
Title NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer NimbleGen Systems Inc.
Manufacture protocol http://www.nimblegen.com/products/chip/index.html
 
Description Tiling array using NimbleGen platform (DesignID=6112). WormBase release WS170. Complete tiling of pseudo-chromosomes; no filtering; isothermal (target tm=76); mean probe length=54 (range=50 to 75); mean distance between probes=-6 (range=-18 to 1111); all probes on forward strand.
 
Web link http://www.nimblegen.com
Contributor(s) Meyer B, Henikoff S
Submission date Jul 25, 2008
Last update date Feb 24, 2012
Contact name Jorja Henikoff
E-mail(s) jorja@fhcrc.org
Phone 206-667-4850
Organization name Fred Hutchinson Cancer Research Center
Department Basic Sciences
Lab Henikoff
Street address 1100 Fairview AV N, A1-162
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Samples (35) GSM365606, GSM468560, GSM468561, GSM468563, GSM468564, GSM468565 
Series (5)
GSE14640 A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome
GSE14651 DCC binding and function (ChIP-chip: DPY-27)
GSE18898 A native chromatin purification system for epigenomic profiling in C. elegans

Data table header descriptions
ID NimbleGen PROBE_ID, FS=forward strand, RS=reverse strand.
CHR Chromosome
RANGE_GB
RANGE_START Start position of the probe within chromosome
RANGE_END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array
RANGE_STRAND

Data table
ID CHR RANGE_GB RANGE_START RANGE_END SEQUENCE RANGE_STRAND
IFS000000001 I NC_003279.5 1 50 GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC +
IFS000000047 I NC_003279.5 47 96 AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA +
IFS000000093 I NC_003279.5 93 142 CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT +
IFS000000139 I NC_003279.5 139 188 GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC +
IFS000000185 I NC_003279.5 185 234 AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA +
IFS000000231 I NC_003279.5 231 280 CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT +
IFS000000277 I NC_003279.5 277 326 GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC +
IFS000000323 I NC_003279.5 323 372 AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAA +
IFS000000369 I NC_003279.5 369 418 CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT +
IFS000000415 I NC_003279.5 415 466 GCCTAAGCCTAAGCCTAAAAAATTGAGATAAGAAAACATTTTACTTTTTCAA +
IFS000000461 I NC_003279.5 461 511 TTTCAAAATTGTTTTCATGCTAAATTCAAAACGTTTTTTTTTTAGTGAAGC +
IFS000000507 I NC_003279.5 507 556 GAAGCTTCTAGATATTTGGCGGGTACCTCTAATTTTGCCTGCCTGCCAAC +
IFS000000553 I NC_003279.5 553 602 CAACCTATATGCTCCTGTGTTTAGGCCTAATACTAAGCCTAAGCCTAAGC +
IFS000000599 I NC_003279.5 599 653 AAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTA +
IFS000000645 I NC_003279.5 645 699 CTAAGCCTAAGACTAAGCCTAAGACTAAGCCTAAGACTAAGCCTAATACTAAGCC +
IFS000000691 I NC_003279.5 691 744 TACTAAGCCTAAGCCTAAGACTAAGCCTAAGCCTAATACTAAGCCTAAGCCTAA +
IFS000000737 I NC_003279.5 737 791 AAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCCTAAGACTA +
IFS000000783 I NC_003279.5 783 837 CTAAGACTAAGCCTAAGACTAAGCCTAATACTAAGCCTAAGCCTAAGACTAAGCC +
IFS000000829 I NC_003279.5 829 884 GACTAAGCCTAAGCCTAAAAGAATATGGTAGCTACAGAAACGGTAGTACACTCTTC +
IFS000000875 I NC_003279.5 875 928 TACACTCTTCTGAAAATACAAAAAATTTGCAATTTTTATAGCTAGGGCACTTTT +

Total number of rows: 2143307

Table truncated, full table size 213553 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7098.WS190.txt.gz 18.5 Mb (ftp)(http) TXT
GPL7098.WS220.gff.gz 20.9 Mb (ftp)(http) GFF
GPL7098.ndf.gz 98.5 Mb (ftp)(http) NDF

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