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Platform GPL7099

Query DataSets for GPL7099

Status

Public on Dec 31, 2008

Title

Agilent-015279 Mouse CpG Island ChIP-on-Chip Microarray 2x105K (Feature Number version)

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Mus musculus

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Catalog number

G4811A

Description

Mouse CpG Island ChIP-on-Chip Microarray 2x105K
Enriched content sourced from UCSC mm8, NCBI build 36 (February 2006)
16,030 CpG islands
97,652 probes in or within 95bp of CpG Islands
2 x 105K slide format printed using Agilent's 60-mer SurePrint technology
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL10324.

Submission date

Jul 26, 2008

Last update date

Dec 06, 2012

Organization

Agilent Technologies

E-mail(s)

cag_sales-na@agilent.com

Phone

877-424-4536

URL

http://www.agilent.com

Department

Street address

City

Palo Alto

State/province

ZIP/Postal code

94304

Country

USA

Samples (150)

More...

GSM309425, GSM309533, GSM309534, GSM309535, GSM309536, GSM309537

Series (14)

More...

GSE12315	Methylation of Polycomb target genes in intestinal cancer is mediated by inflammation
GSE23953	Detection of aberrant DNA methylation in undifferentiated and differentiated mouse ES cells compared to normal tissues
GSE36633	Analysis of differential genetic expression by dietary intervention using moderate-carbohydrate restriction diet supplemented with calorie restriction mimetic multiple phytochemicals extracts(MCDmp) in B16F10 xenografted mouse model.

Relations

Alternative to

GPL10324

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
SPOT_ID	Spot identifier
CONTROL_TYPE	Control type
GB_ACC	GenBankAccession
GENE_SYMBOL	Gene Symbol
CHROMOSOMAL_LOCATION	Chromosomal Location
DESCRIPTION	Description
ACCESSION_STRING	Accession String
GB_RANGE	RefSeq location (mm8, NCBI Build 36)

Data table
ID	COL	ROW	SPOT_ID	CONTROL_TYPE	GB_ACC	GENE_SYMBOL	CHROMOSOMAL_LOCATION	DESCRIPTION	ACCESSION_STRING	GB_RANGE
1	264	398	MmCGHBrightCorner	pos		MmCGHBrightCorner
2	264	396	DarkCorner	pos		DarkCorner
3	264	394	DarkCorner	pos		DarkCorner
4	264	392	A_68_P29695815	FALSE		Entpd4	chr14:068290456-068290500		ref\|NM_026174\|ref\|Entpd4:-36\|mgc\|BC043134:-50	NC_000080.4[068290456-068290500]
5	264	390	A_68_P22609956	FALSE		Cyr61	chr3:145587083-145587136		ref\|NM_010516\|ref\|Cyr61:258\|mgc\|BC066019:242	NC_000069.4[145587083-145587136]
6	264	388	A_68_P25599898	FALSE		Kcnq1	chr7:143105030-143105074		ref\|NM_008434\|ref\|Kcnq1:188409\|mgc\|BC055304:188364	NC_000073.4[143105030-143105074]
7	264	386	A_68_P25351156	FALSE		1810020D17Rik	chr7:097455596-097455640		ref\|NM_183251\|ref\|1810020D17Rik:-1011\|mgc\|BC085127:521\|mgc\|BC026557:-1011\|ens\|ENSMUST00000072725.3:-4773	NC_000073.4[097455596-097455640]
8	264	384	A_68_P28604402	FALSE		Fos	chr12:086376124-086376177		ref\|NM_010234\|ref\|Fos:13147\|mgc\|BC029814:13147	NC_000078.4[086376124-086376177]
9	264	382	A_68_P21393923	FALSE		2700094K13Rik	chr2:084471211-084471255		ref\|NM_001033166\|ref\|2700094K13Rik:314\|ref\|NM_001037279:314	NC_000068.5[084471211-084471255]
10	264	380	A_68_P23229577	FALSE		Ipp	chr4:116005368-116005412		ref\|NM_008389\|ref\|Ipp:-90\|ens\|ENSMUST00000030461.3:-3113	NC_000070.4[116005368-116005412]
11	264	378	A_68_P27129526	FALSE		chr10:050281109-050281153	chr10:050281109-050281153		ens\|ENSMUST00000035976.3:10	NC_000076.4[050281109-050281153]
12	264	376	A_68_P23433038	FALSE		Prdm16	chr4:153479433-153479477		ref\|NM_027504\|ref\|Prdm16:1218\|mgc\|BC059838:1196	NC_000070.4[153479433-153479477]
13	264	374	A_68_P25065688	FALSE		1600014C10Rik	chr7:037883384-037883435		ref\|NM_028166\|ref\|1600014C10Rik:-9494\|mgc\|BC092099:-9536	NC_000073.4[037883384-037883435]
14	264	372	A_68_P29410281	FALSE		3830406C13Rik	chr14:011077258-011077317		ref\|NM_146051\|ref\|3830406C13Rik:-188\|ref\|NM_178141:-188	NC_000080.4[011077258-011077317]
15	264	370	A_68_P21060552	FALSE		Pdss1	chr2:022747258-022747302		ref\|NM_019501\|ref\|Pdss1:112\|mgc\|BC026820:2\|ens\|ENSMUST00000091396.2:103	NC_000068.5[022747258-022747302]
16	264	368	A_68_P27966234	FALSE		Tmem132e	chr11:082250604-082250648		ref\|NM_023438\|ref\|Tmem132e:45532\|ens\|ENSMUST00000092852.1:45385	NC_000077.4[082250604-082250648]
17	264	366	A_68_P30778641	FALSE		2310061J03Rik	chr16:055899669-055899713		ref\|NM_133677\|ref\|2310061J03Rik:-190\|ref\|NM_024218:8348\|mgc\|BC017620:-190	NC_000082.4[055899669-055899713]
18	264	364	A_68_P29011721	FALSE		Dek	chr13:047117039-047117083		ref\|NM_025900\|ref\|Dek:21\|mgc\|BC055451:77	NC_000079.4[047117039-047117083]
19	264	362	A_68_P28520553	FALSE		Txndc1	chr12:071371757-071371801		ref\|NM_028339\|ref\|Txndc1:21\|mgc\|BC017603:21	NC_000078.4[071371757-071371801]
20	264	360	A_68_P21843314	FALSE	NM_175303	Sall4	chr2:168441691-168441735	INSIDE	ref\|NM_175303\|ref\|Sall4:16693\|ref\|NM_201395:16693\|ens\|ENSMUST00000099063.1:-1185	NC_000068.5[168441691-168441735]

Total number of rows: 105072

Table truncated, full table size 17298 Kbytes.

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Supplementary data files not provided