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Platform GPL7122 Query DataSets for GPL7122
Status Public on Dec 30, 2008
Title Agilent Mouse Developmental Custom Microarray 44K (RIKEN-BioResurce +MPI-MolecularBiomedicine)
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site
 
 
Contributor(s) Wu G, Gentile L, Tae Do J, Cantz T, Sutter J, Psathaki K, Esteves T, Arauzo-Bravo MJ, Ortmeier C, Fuchikami T, Abe K, Scholer HR
Submission date Aug 03, 2008
Last update date Dec 30, 2008
Contact name Marcos J Araúzo-Bravo
E-mail(s) mararabra@yahoo.co.uk
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Lab Computational Biology and Bioinformatics
Street address Rontgenstr. 20
City Muenster
ZIP/Postal code 48149
Country Germany
 
Samples (2) GSM309892, GSM309893
Series (1)
GSE12330 Embryonic stem cells derived from developmentally incompetent embryos deficient in maternal and zygotic Cdx2

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SEQ_ID Primary sequence name
GENE_SYMBOL Gene symbol
DESCRIPTION Gene description
UNIGENE UniGene ID
ORF
SPOT_ID
CONTROL_TYPE Control type (1, positive control; -1, negative control; 0, no control)
SEQUENCE Probe sequence

Data table
ID COL ROW SEQ_ID GENE_SYMBOL DESCRIPTION UNIGENE ORF SPOT_ID CONTROL_TYPE SEQUENCE
1 1 1 BrightCorner BrightCorner 1 ATCATCGTAGCTGGTCAGTGTATCCTTTTTTTTTTATCATCGTAGCTGGTCAGTGTATCC
2 3 1 3xSLv1 3xSLv1 -1 GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG
3 5 1 TF32597 Rarb Retinoic acid receptor, beta Mm.259318 Rarb 0 TTCATTATGGCCATACCGAAAAAACTCAGCCACATAGACCTACAGGGCCAAGCTTCAACA
4 7 1 TF34369 Ireb2 Iron responsive element binding protein 2 Mm.208991 Ireb2 0 GTTTCCAGGAGGAAATTGTTAACCTTGTTGACTTGCTGAGAGGCTATTAGAACTCTTAAC
5 9 1 TF10686 Arhgef12 Rho guanine nucleotide exchange factor (GEF) 12 Mm.275266 Arhgef12 0 TAAATAGTGTGGGGTGTGGTTTGGGTTTTTGAATTATATGGAAAATATTAAAGGTGGGTG
6 11 1 1J013G09 BC020002 CDNA sequence BC020002 Mm.257151 BC020002 0 AAGGATGTCCTTCATAGTTCAGGAAATAAAGTCACTCATGGCTTTGCCGTCGTGGAAAAA
7 13 1 QC_Fusion QC_Fusion 1 ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
8 15 1 TF13827 Mm.380487 TF13827 0 CCTTTAGTTGCCACTTTTAAGATATTTTCAATGGGGCCTCTCATAATAAAGAGACTCTAA
9 17 1 TB6477 Aoah Acyloxyacyl hydrolase Mm.314046 Aoah 0 TTCAATGGCCTCATGTCCTGGGAAAGGAGAATCCATTCAACTCTCAGATTGAAGAGGTGT
10 19 1 TF29761 3300001A09Rik RIKEN cDNA 3300001A09 gene Mm.105353 3300001A09Rik 0 CTTGATATCACCATGGTCTGGGCTACCTGATGCCCTAAGTACTGGTGATTTGGGTAAATA
11 21 1 r60_a20 r60_a20 1 CGGAACCACCTGGAGCTCGATCTAGTCCCTAAAGGGGGGGAGCAGGGATTTGCTAAGCTT
12 23 1 TF22718 Rnf217 Ring finger protein 217 Mm.295212 Rnf217 0 TAAGGTAGAAGACTAGTGAGTTCAAGCTGTGATTCTCAGCTACAGATTGAAACTGCCTGA
13 25 1 TF26077 - TF26077 0 TCACAAAGACATACTACATTCTTCTGAGGTAAGAGTTAATCCAAATAGCCTTGACAATTG
14 27 1 QC_Fusion QC_Fusion 1 ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
15 29 1 TF16304 Tasp1 Taspase, threonine aspartase 1 Mm.293449 Tasp1 0 TTCTTTCCTGAGCTATTTGAAGCTTAAGTATTGCATAGCTTTGCGCCGTGTGTACTATAT
16 31 1 TB5808 Tuba3a Tubulin, alpha 3A Mm.287784 Tuba3a 0 AACCTCAACCGTCTGATTGGGCAGATTGTGTCATCCATCACAGCCTCCCTAAGGTTCGAT
17 33 1 1C115D04-3 Zfp650 Zinc finger protein 650 Mm.314576 Zfp650 0 TGGTGTGATCTTGTATGAATGATCATTTAAATACAGTACATTACTGTAGAAGTGAAATCA
18 35 1 TE71006 6230416J20Rik RIKEN cDNA 6230416J20 gene Mm.74730 6230416J20Rik 0 AAAGATGGAAGACCATGGATCTAGGGAGGGCAAACTAAGACATCAAGGTAGAAAATGTCA
19 37 1 TB9874 Hsbp1 Heat shock factor binding protein 1 Mm.358714 Hsbp1 0 TAGCCTCAAAGCCAGTTTTGATGACTTAGAAGGCAATCTATGTCACTGTCCCCACAAAGT
20 39 1 TF25210 9830166K06Rik RIKEN cDNA 9830166K06 gene Mm.150255 9830166K06Rik 0 AGCTTGCTTTATGGTGCAGCTGTGATTACTGCGATCACTGACTGTCGTTCCTGCCAGCGG

Total number of rows: 44290

Table truncated, full table size 5813 Kbytes.




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