GEO help: Mouse over screen elements for information.
Status
Public on Nov 01, 2008
Title
Zea mays 1x44K Agilent array - designed by Walbot Lab
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Zea mays Manufacturer
Agilent
Manufacture protocol
43K 60-mer oligo probes were designed from the TIGR maize contigs and synthesized in situ by an ink-jet printing method employing standard phosphoramidite chemistry on glass slides.
Submission date
Aug 26, 2008
Last update date
Nov 01, 2008
Contact name
John F Fernandes
E-mail(s)
jfernand@stanford.edu Phone
650-533-9376
Organization name
Stanford University
Department
Bio Sci
Lab
Walbot
Street address
385 Serra Mall
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (28)
GSM315564 , GSM315565 , GSM315566 , GSM315567 , GSM315568 , GSM315569
GSM315570 ,
GSM315571 ,
GSM315572 ,
GSM315573 ,
GSM315574 ,
GSM315575 ,
GSM315576 ,
GSM315577 ,
GSM315578 ,
GSM315579 ,
GSM315580 ,
GSM315581 ,
GSM315582 ,
GSM315583 ,
GSM315584 ,
GSM315585 ,
GSM315586 ,
GSM315587 ,
GSM315588 ,
GSM315589 ,
GSM315590 ,
GSM315591 Series (1)
GSE12579 Gene expression profiling of maize anther and pollen ontogeny
Data table header descriptions ID Agilent identifier for the probe indicating probe position on the slide.
ProbeUID Agilent unique identifier for the probe sequence
Accessions TIGR TUC or Genbank accession or MAGI ID for the source sequence
GB_ACC GenBank Accession number
ProbeName Local identifier for the probe or control sequence.
SEQUENCE Probe sequence (60-mers)
ControlType Positive (1) or negative (-1) control indicator. 0 means not a control.
SPOT_ID
Data table ID ProbeUID Accessions GB_ACC ProbeName SEQUENCE ControlType SPOT_ID 1
0
BrightCorner
1
CONTROL
2
1
(-)3xSLv1
-1
CONTROL
3
2
tigr|TC312509
zm_24558
AACCCTCTAGCTGCTGTTCAACAAGTGCCACAAGCCCCTCGAGGAAGCTGGTGATTGGTG
0
tigr|TC312509
4
4
gb|CF004147
CF004147 zm_37528
GGACCAAACAGCACAAGTGACCATCCCAGATCAGAGTTTCGCTAGGTCGGTTGGTACACA
0
5
6
tigr|TC311283
zm_9059
GCCATTATCATGCATAATACTTCACCTCCCCATTTCTTTGCTAATCCAAGGACTAGCCAC
0
tigr|TC311283
6
8
gb|AI491221
AI491221 zm_31609
AAAAAGGGACCCCACTCAACATTAAACTCAAACCAGAAGTTTTATAATAGCACTCACCCC
0
7
10
(+)Pro25G-02
1
CONTROL
8
12
tigr|TC279349
zm_13558
AATAGAGATGGCCTCATTGAATACCGAGCACATCCTTTCTGGATGCAGAAGTACTGTCCT
0
tigr|TC279349
9
14
gb|CD434798
CD434798 zm_27927
TGATCATTTTCTTGCAGCCTGTGTTTTCTCCCGACAATTCTGGTTCCAGCTTCTTCAGAA
0
10
16
tigr|TC286447
zm_41279
GTTTCAAGTGATGAAGCTATCGAGACTGCCAAGGCTCTTGCTCTGAAAGAAGGGTTGTTG
0
tigr|TC286447
11
18
(+)E1A_r60_a20
1
CONTROL
12
20
gb|CF061427
CF061427 zm_33275
ACTTAGCAATCACCTAAGGGGTCACCTTATTGCATTCGGAGCCTGAAGTCACCATGTTGG
0
13
22
tigr|TC292210
zm_17897
CTCAGCACAAGCCATTTGTTTAGTATAGCGAATGGGATCTTTTATGTAAATGAGCTCGTG
0
tigr|TC292210
14
10
(+)Pro25G-02
1
CONTROL
15
25
gb|CD432921
CD432921 zm_39141
GCCATGTCCGCAAGGTCTCTGGACCTGTGGTTGTGGCTGATGGAATGGGTGGTGCTGCCA
0
16
27
tigr|TC296207
zm_19060
ATGTCGTAATGGTGCTGATTATAGAGTGGTGATCAAATGTCTTTTTGTGACACGCTGCTC
0
tigr|TC296207
17
29
tigr|TC284009
zm_14930
TAACCGGTAGCAACGACCTCTAAAGATCGATGAGGAACAGAGTAACAACAAAGGGCACAG
0
tigr|TC284009
18
31
tigr|TC289401
zm_16632
CCAGTGCGAGCTGAAGCATCCAGGCTCTGGAATCATCGTCGGGATGTCTGTGCCAGCATC
0
tigr|TC289401
19
33
gb|CD976541
CD976541 zm_13428
TCAGAGGTTGTAAGCCTCATCCACTGAAGATCTGCGCAGTTCGGAAGTCTAGCGTGAGAA
0
20
35
tigr|TC288689
zm_16408
CTGTCTGAATCTGAAGGTGCAGGGCTACTCACTACTGAGTTACTGACCGAGCGATGCTGC
0
tigr|TC288689
44290 4583 Kbytes .Supplementary data files not provided
Less...
More...