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Platform GPL7230 Query DataSets for GPL7230
Status Public on May 29, 2009
Title PFGRC Streptococcus pneumoniae Version 2
Technology type spotted DNA/cDNA
Distribution non-commercial
Organisms Streptococcus pneumoniae TIGR4; Streptococcus pneumoniae R6; Streptococcus pneumoniae G54
Manufacturer PFGRC
Manufacture protocol see: Hendriksen et al. 2006
 
Description Microarray Version: 2
Number of Grids: 96
Element Type: Amplicon
Surface Coating: Aminosilane
Oligonucleotides Designed: 2694
Replicate Oligo Printings: 4x
Controls: 500 Arabidopsis thaliana 70mers; 40 Arabidopsis thaliana amplicons
 
Submission date Aug 28, 2008
Last update date May 29, 2009
Contact name Utpal Pandya
E-mail(s) utpandya@utmb.edu
Phone 409-772-4996
Organization name University of Texas Medical Branch
Department Microbiology and Immunology
Street address 301 University Blvd
City Galveston
State/province TX
ZIP/Postal code 77555-1070
Country USA
 
Samples (3) GSM315879, GSM315880, GSM315881
Series (1)
GSE12607 Global Transcription Profiling and Virulence Potential of Streptococcus pneumoniae after Serial Passage

Data table header descriptions
ID
Name ORF designation
Well_ID well id
ORF Locus tag
ORGANISM Streptococcus pneumoniae strain name
common_name Common name
size Amplicon size
amplified PCR amplification result (1=success, 0=failure)
verified Verified PCR product size on a gel (1=expected, 0=unexpected)
SPOT_ID

Data table
ID Name Well_ID ORF ORGANISM common_name size amplified verified SPOT_ID
1 ORF00280 8729 SP_0340 Streptococcus pneumoniae TIGR4 autoinducer-2 production protein 309 1 1
2 ORF01774 9957 SP_1577 Streptococcus pneumoniae TIGR4 adenine phosphoribosyltransferase 311 1 1
3 ORF00813 9166 SP_0781 Streptococcus pneumoniae TIGR4 hypothetical protein 314 1 1
4 ORF00957 9281 SP_0897 Streptococcus pneumoniae TIGR4 pyruvate kinase 317 1 1
5 ORF00298 8745 SP_0356 Streptococcus pneumoniae TIGR4 O-antigen transporter RfbX, putative 332 1 1
6 ORF02688 10688 SP_0078 Streptococcus pneumoniae TIGR4 potassium uptake protein, Trk family 336 1 1
7 ORF01175 9467 SP_1085 Streptococcus pneumoniae TIGR4 IS1381, transposase OrfA, authentic frameshift 340 1 0
8 ORF00765 9125 SP_0740 Streptococcus pneumoniae TIGR4 MutT/nudix family protein 343 1 0
9 ORF00389 8823 SP_0434 Streptococcus pneumoniae TIGR4 conserved hypothetical protein 310 1 1
10 ORF00974 9293 SP_0909 Streptococcus pneumoniae TIGR4 conserved hypothetical protein 312 1 1
11 ORF00741 9106 SP_0721 Streptococcus pneumoniae TIGR4 conserved hypothetical protein 315 1 1
12 ORF01454 9700 SP_1319 Streptococcus pneumoniae TIGR4 v-type sodium ATP synthase, subunit C 318 1 1
13 ORF01353 9617 SP_1235 Streptococcus pneumoniae TIGR4 MutT/nudix family protein 333 1 1
14 ORF02566 10589 SP_2217 Streptococcus pneumoniae TIGR4 rod shpae-determining protein MreD, putative 337 1 1
15 ORF02118 10236 SP_1860 Streptococcus pneumoniae TIGR4 choline transporter 341 1 1
16 ORF01727 9920 SP_1540 Streptococcus pneumoniae TIGR4 single-strand binding protein 345 1 1
17 ORF00793 9147 SP_0762 Streptococcus pneumoniae TIGR4 S-adenosylmethionine synthetase 365 1 1
18 ORF02173 10281 SP_1905 Streptococcus pneumoniae TIGR4 IS1167, transposase, interruption 369 1 1
19 ORF01158 9451 SP_1069 Streptococcus pneumoniae TIGR4 conserved hypothetical protein 373 1 1
20 ORF01597 9811 SP_1431 Streptococcus pneumoniae TIGR4 type II DNA modification methyltransferase, putative 379 1 1

Total number of rows: 13824

Table truncated, full table size 1181 Kbytes.




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