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Platform GPL7261 Query DataSets for GPL7261
Status Public on Sep 12, 2008
Title Princeton Biocomplexity Project, BC007 and BC008
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Phaeodactylum tricornutum; Dunaliella tertiolecta; Chlamydomonas reinhardtii; Pseudochlorella pringsheimii; Asterionellopsis glacialis; Cylindrocystis sp. UTEX 1925; uncultured eukaryote; uncultured Chlorophyta; Haptophyta environmental samples
Manufacturer Princeton Microarray Facility
Manufacture protocol 70-mer oligonucleotides, spotted using DiRisi type arrayer
 
 
Submission date Sep 09, 2008
Last update date Sep 12, 2008
Contact name Bess B Ward
E-mail(s) bbw@princeton.edu
Phone 6092585150
Fax 6092580796
Organization name Princeton University
Department Geosciences
Lab Ward
Street address Guyot Hall
City Princeton
State/province NJ
ZIP/Postal code 08540
Country USA
 
Samples (19) GSM319904, GSM319905, GSM319906, GSM319907, GSM319908, GSM319909 
Series (1)
GSE12742 Phytoplankton community composition and gene expression involved in carbon and nitrogen assimilation

Data table header descriptions
ID
Probe ID probe
Description description
GB_ACC GenBank accession
GENE-ID
SEQUENCE
SPECIES
SPOT_ID

Data table
ID Probe ID Description GB_ACC GENE-ID SEQUENCE SPECIES SPOT_ID
1 Chlamy NR gene ffrom Chlamydomonas M26075.1 nitrate reductase (NR) AAGGAGGTGCTGTGCCGCGCCTGGGATGAGACCATGAACACGCAGCCGGCGGTGATCACCTGGAACCTGA Chlamydomonas rheinhardtii (Class Chlorophyceae)
2 Volvox NR gene from Volvox X64163 nitrate reductase (NR) AAGGAGGTCCTGCTCCGCGCCTGGGATGAGACCATGAACACGCAGCCCGCGATCATCACGTGGAACGTCA Volvox carteri (Class Chlorophyceae)
3 Dunaliella NR gene from Dunaliella AY078279 nitrate reductase (NR) AAGGAGATGCTGCTACGCGCCTGGGATGAAACACAGAACACCCAGCCTGCATTGCTGACTTGGAATGTCA Dunaliella tertiolecta (Class Chlorophyceae)
4 Leo212152 NR gene from uncutured phytoplankton sample from New Jersey coastal seawater AY579351 nitrate reductase (NR) GGCGAGGTGTGCTGCCGCGCCTGGGACTTCCGGGACAACACGCAGCCGGCGAACATCACGTGGAACGTCA diatoms (Class Bacillariophyceae, uncultivated)
5 Leo212154 NR gene from uncutured phytoplankton sample from New Jersey coastal seawater nitrate reductase (NR) AAAGAGATCTGCTGCCGTGCCGTGGACTCCAACCAGAACATGCAGCCGATGTTCCTGACATGGAATGTCA diatoms (Class Bacillariophyceae, uncultivated) Leo212154
6 Chlorella NR gene from Chlorella AY275834.1 nitrate reductase (NR) CCTGAGATCATTTGCCGAGCCTGGGACAGCTCCATGAACACACAGCCCAACACGTTCACCTGGAACGTGA Chlorella vulgaris (Class Chlorphyceae)
7 Leo21212 NR gene from uncutured phytoplankton sample from New Jersey coastal seawater nitrate reductase (NR) AAGGAGATCATGTGCCGTGCCTGGGATGAGAGTAACAATGTCCAGCCGATGAACCCGACG-GGAACCTCA diatoms (Class Bacillariophyceae, various cultured and uncultivated) Leo21212
8 Leo21213 NR gene from uncutured phytoplankton sample from New Jersey coastal seawater AY579351 nitrate reductase (NR) GACGAGATCATCTTCCGAACCTGGGACCAGTCCATGAACTACATGCCGGAGCGCCCCACCTGGAACGTGA diatoms (Class Bacillariophyceae, various cultured and uncultivated)
9 MBap22 NR gene from uncultured phytoplankton sample from Monterey Bay, CA, seawater AY579368 nitrate reductase (NR) AAAGAGATCTGGTGCCGCGCCTGGGACGACGCCAACAACTGTCAGCCTGTGAACCCAACATGGAATTTAA diatoms (Class Bacillariophyceae, various cultured and uncultivated)
10 MBap19consens NR gene from uncultured phytoplankton sample from Monterey Bay, CA, seawater nitrate reductase (NR) AAGGAGATTATGTGCCGTGCGTGGGACGAGTCAAACAACTGCCAGCCAATGAACCCAACTTGGAATCTGA diatoms (Class Bacillariophyceae, various cultured and uncultivated) MBap19consens
11 MBap244 NR gene from uncultured phytoplankton sample from Monterey Bay, CA, seawater AY579369 nitrate reductase (NR) AAGAGAATTTTGTGTAGGGCTTGGGATGAAAGCAGTATGCCTCAACCTATGAATGTCACTTGGAATCTCA diatom (Class Bacillariophyceae, uncultivated)
12 Toceanica NR gene from Thalassiosira oceanica Toceanica
13 TwTpSkEnAs NR gene composite sequence from several cultured diatoms TwTpSkEnAs
14 Amorpha NR gene from Amorpha Amorpha
15 ChaetCosc NR gene from Chaetoceros and Coscinodiscus ChaetCosc
16 Phaeo NR gene from Phaeodactylum tricornutum AY579336 nitrate reductase (NR) AAGGAAATTATATGCCGCGCCTGGGATGAGTCCAACAACCCTCAGCCAGTTGTTCCAACATGGAATCTGA Phaeodactylum tricornutum CCMP1405 (Class Bacillariophyceae)
17 ProkGrp1 rbcL gene from cyanobacteria rbcL CGTCAGACCACCCTCGGCTACATCGACCAGCTGCGCGAATCCTTCGTGCCCGAAGACCGCAGCCGCGGCA cyanobacterium (Phylum Cyanobacterium, uncultivated) ProkGrp1
18 ProkGrp2 rbcL gene from cyanobacteria rbcL CGTCAGACCACYCTTGGTTATATTGACAACCTTCGTGAATCCTTTGTTCCTGAAGACCGCACACGCGGYA cyanobacterium (Phylum Cyanobacterium, uncultivated) ProkGrp2
19 ProkGrp3 rbcL gene from cyanobacteria rbcL CGTCAAACAACTCTTGGTTACATTGACAACTTAAGAGAGTCATTTGTTCCTGAAGATAGATCAAGAGGTA cyanobacterium (Phylum Cyanobacterium, uncultivated) ProkGrp3
20 ProkGrp4 rbcL gene from cyanobacteria rbcL CGTCAAACAACTCTTGGTTATATCGACAACCTACGTGAATCCTTTGTCCCTGAAGACCGTYCTCGCGGTA Prochlorococcus marinus various strains (Phylum Cyanobacterium) ProkGrp4

Total number of rows: 47

Table truncated, full table size 8 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7261_full_array.txt.gz 2.6 Kb (ftp)(http) TXT

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