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Status
Public on Sep 11, 2008
Title
MEEBO Mus musculus Oligo 70mer Array V1.1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Mus musculus Manufacturer
UCSF Center for Advanced Technology (CAT)
Manufacture protocol
Oligos are arrayed in Genetix x7020 384-well plates. Each well contains 200pmol of 70-mer oligo. During the first round of resuspension, oligos were resuspended in 3XSSC to a final concentration of 30 micromolar. After each print, oligos are dried in a vacuum centrifuge. During subsequent prints, oligos are resuspended in water to a final concentration of 30 micromolar taking into consideration the amount of oligo printed in the previous printrun. Oligos are printed using 48 Parallel Synthesis silicon 50 micrometer printing tips on a DeRisi-style custom built microarrayer. A sector width of 28 and a spacing of 155 microns is employed.
Support
glass
Coating
Poly-L-lysine
Contributor(s)
Ash A , Diehn M , Seidel C , Mui L , Hagen M , Foo C , Leber J , Erle D , Yang J , Barczak A , Joesph D , Zhu J , Brown P , Rubins K , Popper S , Marquis J , Fero M , Coller J , Zhang P , Chin N , Seraia E , Pollack J , Kim Y , Gaasterland T , Snyder B , Novoradovsky A , Zavolan M , Batra S Submission date
Sep 09, 2008
Last update date
Oct 20, 2010
Contact name
Sajeev Batra
Organization name
UCSF
Street address
Box 2240, 600 16th Street S474
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Samples (219)
GSM319493 , GSM319494 , GSM319495 , GSM319496 , GSM319497 , GSM319498
GSM319499 ,
GSM319500 ,
GSM319501 ,
GSM319502 ,
GSM500873 ,
GSM500874 ,
GSM500875 ,
GSM500876 ,
GSM500877 ,
GSM500878 ,
GSM500879 ,
GSM500880 ,
GSM500881 ,
GSM500882 ,
GSM500883 ,
GSM500884 ,
GSM500885 ,
GSM500886 ,
GSM500887 ,
GSM500888 ,
GSM500889 ,
GSM500890 ,
GSM500891 ,
GSM500892 ,
GSM500893 ,
GSM500894 ,
GSM500895 ,
GSM500896 ,
GSM501896 ,
GSM501897 ,
GSM501898 ,
GSM501899 ,
GSM501900 ,
GSM501901 ,
GSM501902 ,
GSM501903 ,
GSM501904 ,
GSM501905 ,
GSM501906 ,
GSM501907 ,
GSM501908 ,
GSM501909 ,
GSM501910 ,
GSM501911 ,
GSM501912 ,
GSM501913 ,
GSM501914 ,
GSM501915 ,
GSM501916 ,
GSM501917 ,
GSM501918 ,
GSM501919 ,
GSM501920 ,
GSM501921 ,
GSM501922 ,
GSM501923 ,
GSM501924 ,
GSM501925 ,
GSM501926 ,
GSM501927 ,
GSM501928 ,
GSM501929 ,
GSM501930 ,
GSM501931 ,
GSM501932 ,
GSM501933 ,
GSM501934 ,
GSM501935 ,
GSM501936 ,
GSM501937 ,
GSM501938 ,
GSM501939 ,
GSM501940 ,
GSM501941 ,
GSM501942 ,
GSM501943 ,
GSM501944 ,
GSM501945 ,
GSM501946 ,
GSM501947 ,
GSM501948 ,
GSM501949 ,
GSM501950 ,
GSM501951 ,
GSM501952 ,
GSM501953 ,
GSM501954 ,
GSM501955 ,
GSM501956 ,
GSM501957 ,
GSM501958 ,
GSM501959 ,
GSM501960 ,
GSM501961 ,
GSM501962 ,
GSM501963 ,
GSM501964 ,
GSM501965 ,
GSM501966 ,
GSM501967 ,
GSM501968 ,
GSM501969 ,
GSM501970 ,
GSM501971 ,
GSM501972 ,
GSM501973 ,
GSM501974 ,
GSM501975 ,
GSM501976 ,
GSM501977 ,
GSM501978 ,
GSM501979 ,
GSM501980 ,
GSM501981 ,
GSM501982 ,
GSM501983 ,
GSM501984 ,
GSM501985 ,
GSM501986 ,
GSM501987 ,
GSM501988 ,
GSM501989 ,
GSM501990 ,
GSM501991 ,
GSM501992 ,
GSM501993 ,
GSM501994 ,
GSM501995 ,
GSM501996 ,
GSM501997 ,
GSM501998 ,
GSM501999 ,
GSM502000 ,
GSM502001 ,
GSM502002 ,
GSM502003 ,
GSM502004 ,
GSM502005 ,
GSM502006 ,
GSM578069 ,
GSM578070 ,
GSM578071 ,
GSM578072 ,
GSM578073 ,
GSM578074 ,
GSM578075 ,
GSM578076 ,
GSM578077 ,
GSM578078 ,
GSM578079 ,
GSM578080 ,
GSM578081 ,
GSM578082 ,
GSM578083 ,
GSM578084 ,
GSM578085 ,
GSM578086 ,
GSM578087 ,
GSM578088 ,
GSM578089 ,
GSM578090 ,
GSM578091 ,
GSM578092 ,
GSM578093 ,
GSM578094 ,
GSM578095 ,
GSM578096 ,
GSM578097 ,
GSM578098 ,
GSM578099 ,
GSM578100 ,
GSM578101 ,
GSM578102 ,
GSM578103 ,
GSM578104 ,
GSM578105 ,
GSM578106 ,
GSM578107 ,
GSM578108 ,
GSM578109 ,
GSM578110 ,
GSM578111 ,
GSM578112 ,
GSM630760 ,
GSM630761 ,
GSM630762 ,
GSM630763 ,
GSM630764 ,
GSM630765 ,
GSM630766 ,
GSM630767 ,
GSM630768 ,
GSM630769 ,
GSM630770 ,
GSM630771 ,
GSM630772 ,
GSM630773 ,
GSM630774 ,
GSM630775 ,
GSM651352 ,
GSM651353 ,
GSM651354 ,
GSM651355 ,
GSM651356 ,
GSM651357 ,
GSM651358 ,
GSM651359 ,
GSM651360 ,
GSM651361 ,
GSM744481 ,
GSM744491 ,
GSM744495 ,
GSM744496 Series (8)
GSE12727 Experimental Malaria Infection Triggers Early Expansion of Natural Killer Cells - NK cell response
GSE20022 Conidia but not yeast cells of the fungal pathogen Histoplasma capsulatum trigger a type I interferon innate immune response in murine macrophages
GSE20087 Delineation of diverse macrophage activation programs in response to intracellular parasites and cytokines
GSE23565 Interferon signaling during early experimental malaria infection
GSE25672 NK cells and immune memory
GSE26490 Secreted bacterial effectors that inhibit host protein synthesis are critical for induction of the innate immune response to virulent Legionella pneumophila [exp2]
GSE26491 Secreted bacterial effectors that inhibit host protein synthesis are critical for induction of the innate immune response to virulent Legionella pneumophila
GSE30078 Eliminating SF-1 (Nr5a1) Sumoylation In Vivo Results in Ectopic Hedgehog Signaling and Disruption of Endocrine Development.
Data table header descriptions ID GB_ACC Genbank Accession
Accession_All All Accessions assigned to this oligo
MGI Mouse Genome Informatics ID
Symbol Gene Symbol
Description Gene Description
SEQUENCE Oligo Sequence
SPOT_ID
Data table ID GB_ACC Accession_All MGI Symbol Description SEQUENCE SPOT_ID mCD038082
CATTCTCTGGAAGGTGAACTTTTACATCGTGATGATTTACCTGCGGATGTCGCGGAGCTGGTGCTGTATC
mCD038082
mCA000312
AGCTATTAAACCAGTAGGGGCCTTTGAAGGCAGCCTCGTGTACTGGGTGGGCCTTGGCCTCCTTCAGACA
mCA000312
mCD038080
TGCGTACCTTCTTTGAAGTGCATAAAGGCTGGCATATTCAGTACAACATCGTTTCCCGCGAAACGCTGCT
mCD038080
mMC016793
BC096025 BC096025 AK132156
MGI:1920209
LONRF2
LON peptidase N-terminal domain and ring finger 2
AGGTCAGTAGTGATGTGGAATATTCACCCAGCTTCGCGCTCTCATTGGGACAAAGATGCGAGTAGCAACA
mMC016792
NM_175284 AF310970 NM_175284 AK052950
MGI:2136761
FZD10
frizzled homolog 10 (Drosophila)
CTGGCTGCAAGAACAGGACATTCGGAGCCCAAATGGGCAGCTTTTCTTGGTTGGCTGGTTGTTGGTAAAT
mMC016791
NM_010717 NM_010717 U15159 AK172083 AF139987 BC063768
MGI:1341868
RFC2
replication factor C (activator 1) 2
GCCATGTCTTCACTCCGCTTCAGTTGACCATCTAGGGCATATTAAACTGTGAAGCTTTCCCAGTGCACTT
mMC016790
NM_153587 BC035298 BC038372 AY341881 AK013999 AK032316 AY341873 NM_153587 AK160758
MGI:1920336
RPS6KA5
ribosomal protein S6 kinase, polypeptide 5
CATGTTTATTTGACAGTTGTGTTAATGATAACCTCGTTAGCATTAGTTTGGAATTTGGACACTATACCTA
mCD038088
TGATCGACTGCCTGGCTCCGGATCGTCGCGTAGAGATCGAAGTTAAAGGTATCAAAGACGTTGTAACTCA
mCD038088
mCD038087
AATTATGCAGCGTTATATCAGTATGAACGTGACGCAAAAGCCGTTCGATAACCCGAAGGTCCGTGAGGCG
mCD038087
mMC010290
NM_010774 BC024812 NM_010774 AF072249 AF120996 AK147782 AK161005
MGI:1333850
MBD4
methyl-CpG binding domain protein 4
GACGTGTCGGAGCTTCTCAAGCCTCTTGGTCTCTACGATCTCCGTGCAAAAACCATTATCAAGTTCTCAG
mMC010292
NM_016676 BC052735 AK159383 AK150791 AK159988 AK168320 AK087964 AK159845 NM_016676 AK146357 AK150384 AK153325 AK166010 BC056374 AK153315 AK150319 AK151473 AK160960 AK005288 AK028320
MGI:105066
RAB10
RAB10, member RAS oncogene family
ACATATCTGCTAAAAGAACCCATGAATTTTTCAGATAGTGTCCCACAGACAATTCTACATGCCTCACTGG
mMC010291
NM_001172122 NM_001172123 NM_001172121 NM_001172126 NM_178660 AK018466 NM_001172124 NM_001172122
MGI:2444477
RBMS3
RNA binding motif, single stranded interacting protein
CCTCCTCCCCAAATGTGTTATGCTATGTCCTCACATGTAAAAAGAAGTGAGCTGTTCCATCCCTCTTAGG
mMC010282
AK042869 AK042869
MGI:1891428
PCDH15
protocadherin 15
AATGTCAAACTCGAAAGCCTGTCTTTTAGTCCTCTATCTGTGTGACACCTGTTACTGACCCGGTGGACAG
mMC010283
AK029902 AK029902 AK086296
MGI:2443341
RIKEN cDNA 4931433A09 gene
AGAATTAAAGCTACTTAGTACAAACAACAAAGAACTGTTTTAAGGCTGGGAAACCCTGGAATCCTAGAAT
mMC010284
AK015860 AK015860
MGI:1922316
RIKEN cDNA 4930521E06 gene
GGAAGTGTCTCACAGCTTATTAAGTGTCAATCTATCAGACCTTTGTTTTAATGATTACAATTTCATGAAG
mMC010285
NM_011408 NM_011408 BC138749 BC138750
MGI:1313258
SLFN12L
schlafen 2
GAGGAATGGGTGAAACTCCAGATGAATGCCCCATCAGGTTGAAGGGGGATTAATAATCTGTATGAGGGCG
mMR030343
NM_175526 NM_175526 AK031121 AK036846
MGI:2444151
CLEC1A
C-type lectin domain family 1, member a
GAAGTTAGTCTCATAATGTAGGTTGTAATATAAAATGTGTTGAAAATTAAGAAAATATTCTAAAGAGTTT
mMC010286
NM_021555 NM_021555 AK085815 BC061251
MGI:1930628
C8orf30B
brain protein 16
ATTACCTGGGGCCGCTGCTCTCCAACCTTAGCCAGCAGGCGGAGGTGCGTGCTTTTCTCCTGGACCCAGA
mMR030342
NM_009918 NM_009918 BC049145
MGI:1341818
CNGA3
cyclic nucleotide gated channel alpha 3
CATGGGAATGTTTAAGCCCCTTATCCTAGCTATGTTATAAATGGATGTCTTACGGGGCTGGTGAGATAAC
mMC010287
NM_024283 AK018770 AK049805 BC002254 NM_024283
MGI:1926146
C2orf40
RIKEN cDNA 1500015O10 gene
GAAACGGCCATGACTACTATGGTGACTACTACCAGCGTCATTATGATGAAGATGCGGCCATTGGTCCCCA
40004 7115 Kbytes .Supplementary data files not provided
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