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Platform GPL7296 Query DataSets for GPL7296
Status Public on Mar 01, 2010
Title CNRS Paramecium megabase chromosome microarray version 1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Paramecium tetraurelia
Manufacturer GODMAP platform (CNRS)
Manufacture protocol - Array were spotted with the GeneTAC G3 (Genomic solutions)
- cDNA were dried and resuspended in 50% formamide and 1% CHAPs (spotting buffer)
- Each array were qualified after spotting by scan with the axon 4000B
- Each array were designed to contain 3 replicates of each probe
Support glass
Coating aminosilane
 
Description GapsII aminosilane coated slides were used
 
Contributor(s) Nowak JK, Juszczuk M, Gromadka R, Jerka-Dziadosz M, Mucchielli M, Agier N, Tang T, Aggerbeck L, Arnaiz O, Cohen J, Herbert C, Delacroix H, Sperling L, Bétermier M, Zagulski M
Submission date Sep 12, 2008
Last update date Mar 01, 2010
Contact name nicolas Agier
E-mail(s) nicolas.agier@pasteur.fr
Phone 01 69 82 37 65
Organization name CNRS
Department transcriptomique
Lab plateforme GODMAP
Street address Avenue de la terrasse
City Gif sur Yvette
State/province Ile de France
ZIP/Postal code 91198
Country France
 
Samples (12) GSM325461, GSM325463, GSM325464, GSM325466, GSM325467, GSM325469 
Series (1)
GSE12988 Screening of the Paramecium tetraurelia megabase chromosome for autogamy-specific genes

Data table header descriptions
ID
Name Spot ID
size in bp size of spotted probe
GENOME_ACC
GB_ACC GeneBank Accession Number
start Start coordinate
end End coordinate
GB_RANGE
Description DNA fragment annotation
SPOT_ID

Data table
ID Name size in bp GENOME_ACC GB_ACC start end GB_RANGE Description SPOT_ID
98 A1-A6 1396 CR548612 210749 212144 NC_006058[210749..212144] PTMB.97c hypothetical protein - PTMB.98c Kelch repeat-containing protein, putative
211 A1-B8 1225 CR548612 463346 464570 NC_006058[463346..464570] PTMB.210 hypothetical protein, Phox-like domain - PTMB.211 Kelch-domain protein
403 A1-D2 1150 CR548612 804903 806052 NC_006058[804903..806052] PTMB.403c K channel, putative
367 A1-D6 1374 CR548612 729791 731164 NC_006058[729791..731164] PTMB.366 Intramembrane peptidase of the signal peptide peptidase family, putative - PTMB.367 hypothetical protein - PTMB.368c hypothetical protein
128 A1-E7 1317 CR548612 265895 267211 NC_006058[265895..267211] PTMB.124 Protein kinase, putative
223 A1-E8 1232 CR548612 496554 497785 NC_006058[496554..497785] PTMB.222 hypothetical protein - PTMB.223c hypothetical protein
89 A1-G6 1364 CR548612 198243 199606 NC_006058[198243..199606] PTMB.88c hypothetical protein - PTMB.89 GTP-binding protein RAB2 homolog
230 A1-H6 1269 CR548612 506774 508042 NC_006058[506774..508042] PTMB.230 hypothetical protein
52 A1-J11 1288 CR548612 110671 111958 NC_006058[110671..111958] PTMB.52c Zn-finger protein, putative
198 A2-B11 1682 CR548612 429545 431226 NC_006058[429545..431226] PTMB.197c Oxidoreductase, putative - PTMB.198c Casein kinase II catalytic subunit, putative
266 A2-B5 1716 CR548612 579667 581382 NC_006058[579667..581382] PTMB.265c Succinyl-diaminopimelate desuccinylase, putative
339 A2-H6 1247 CR548612 683980 685226 NC_006058[683980..685226] PTMB.339c hypothetical protein, transmembrane helices
119 A3-B2 1193 CR548612 257279 258471 NC_006058[257279..258471] PTMB.119c RNA-binding Zn finger, putative
108 A3-B3 1408 CR548612 234259 235666 NC_006058[234259..235666] PTMB.108c Phosphatidylinositol 4-kinase, putative
452 A3-E6 1244 CR548612 954441 955684 NC_006058[954441..955684] PTMB.452 hypothetical protein
300 A3-E9 1634 CR548612 628134 629767 NC_006058[628134..629767] PTMB.299 Peroxisome assembly protein, putative - PTMB.301c Protein kinase, putative - CYC2 Mitotic cyclin, CYC2
247 A3-F6 1449 CR548612 545734 547182 NC_006058[545734..547182] PTMB.247c Transducin, putative
12 A4-A5 2198 CR548612 38966 41163 NC_006058[38966..41163] PTMB.12c hypothetical protein
283 A4-D8 1165 CR548612 607364 608528 NC_006058[607364..608528] PTMB.282 Glutaredoxin-like protein, putative - PTMB.283c hypothetical protein
280 A4-E10 1183 CR548612 601124 602306 NC_006058[601124..602306] no annotated gene

Total number of rows: 482

Table truncated, full table size 61 Kbytes.




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Supplementary data files not provided
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