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Platform GPL7364 Query DataSets for GPL7364
Status Public on Sep 25, 2008
Title TIGR PFGRC Aspergillus nidulans version 2 array designated primarily based on strain FGSC A4
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Aspergillus nidulans
Manufacturer TIGR PFGRC (The Pathogen Functional Genomics Resource Center)
Manufacture protocol Arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point 0,000
Support glass
Coating aminosilane
 
Description This set includes 11481 oligonucleotides (ss oligo 70 mer), has 23962 spots (2x oligo replicates) distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/index.php/microarray/array_description/aspergillus_nidulans/version2.html
Submission date Sep 24, 2008
Last update date Sep 25, 2008
Contact name Daisuke Hagiwara
E-mail(s) dhaggy@niche.tohoku.ac.jp
Phone 81-22-795-3205
Fax 81-22-795-3205
Organization name Tohoku university
Department New Industry Creation Hatchery Center
Lab Abe-project
Street address 6-6-10 Aoba Aramaki
City Sendai
State/province Miyagi
ZIP/Postal code 980-8579
Country Japan
 
Samples (42) GSM324506, GSM324507, GSM324509, GSM324510, GSM412763, GSM412767 
Series (4)
GSE12953 Identification of the calcium-responsive genes dependent on CrzA in the filamentous fungus Aspergillus nidulans
GSE16509 Identification of the fludioxonil-responsive genes dependent on SskA, SrrA, HogA, and AtfA in Aspergillus nidulans
GSE16566 Identification of osmotic stress-responsive genes dependent on HogA and AtfA in Aspergillus nidulans

Data table header descriptions
ID
Row Row of slide
Column Column of slide
Meta Row Mwta row of slide
Meta Column Meta column of slide
Sub Row Row of block
Sub Column Column of block
Oligo ID Oligo identification
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-annealing score
Primary Strain Primary strain
Primary Target Primary target
GB_ACC
Common Name of Primary Target Common name of primary target
Strain FGSC_A4 Strain FGSC_A4
SPOT_ID

Data table
ID Row Column Meta Row Meta Column Sub Row Sub Column Oligo ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target GB_ACC Common Name of Primary Target Strain FGSC_A4 SPOT_ID
1 1 1 1 1 1 1 2QAN00001_D_1 AAGTCAGACTAAGCTTCACTATAGTAGCACAGCCGACTCTACTGGACCTGCTTCTAGGGCGCAGTACAGT 50 31 92 FGSC_A4 AN1T_02874 predicted protein (159 nt) AN1T_02874::70::100.0::1.8E-10::+,AACD01000032::70::100.0::4.3E-10::- AN1T_02874
2 1 2 1 1 1 2 2QAN00003_P_13 GAAAATCTCCCGCGTGGTCGGGAAGGCTCAGATGTCAATATGAAATACTGCACTTTGTCTTCATCCTTCT 45.71 29 95 Obsolete Obsolete Obsolete --Obsolete
3 1 3 1 1 1 3 2QAN00006_L_13 TGTCTGGGCTATGTTCCCGGTCTCATTCATGCGTGGTACATAATTCTCAAAAATCCCGAGCCGGACTATG 48.57 29 78 FGSC_A4 AN1T_06657 conserved hypothetical protein (474 nt) AN1T_06657::70::100.0::6.1E-11::+,AACD01000038::70::100.0::4.3E-10::+ AN1T_06657
4 1 4 1 1 1 4 2QAN00009_H_13 TCTCTAATCACACAAAAGCCGAGTGCCATAAGCCTCGTGTCTTTAAGGGTTCCTGCCGTATCTGCAACCA 48.57 28 63 FGSC_A4 AN1T_06216 conserved hypothetical protein (819 nt) AN1T_06216::70::100.0::1.1E-10::+,AACD01000067::70::100.0::4.3E-10::+ AN1T_06216
5 1 5 1 1 1 5 2QAN00012_D_13 TCCGCGAGAGCCTTGGAGAGGAATAATCAGTTATACACCACATATGCATTTCACATTTTGACGTTTTTCG 41.43 30 60 FGSC_A4 AACD01000093 Aspergillus nidulans contig AACD01000093::70::100.0::4.3E-10::- AACD01000093
6 1 6 1 1 1 6 2QAN00015_P_1 CGTCCACCTGTATGTTTACATTATAGATTACCCAGGCTAGCATTTTACTTTCTTTCTCCGTGCAAAATAA 37.14 29 71 FGSC_A4 AI211339.1 AI211339.1 EST AI211339.1::70::100.0::5.6E-11::+,AACD01000005::70::100.0::4.3E-10::-
7 1 7 1 1 1 7 2QAN00016_L_1 ATCGCCCAGTGAACGTCGTCGATGGAGATGACGAAGATCAAACAATTGAAGGACACAATGATAACATTGA 42.86 29 80 FGSC_A4 AN1T_06303 conserved hypothetical protein (1305 nt) AN1T_06303::70::100.0::2.3E-10::+,AACD01000068::70::100.0::4.3E-10::- AN1T_06303
8 1 8 1 1 1 8 2QAN00019_H_1 TCCCTGCTACGCAATGGATGGAGAAGTACGCGCAGGATGTTATGGGACTTTGTCTATTTAATTTTGACTT 42.86 29 69 FGSC_A4 AN1T_04364 conserved hypothetical protein (1518 nt) AN1T_04364::70::100.0::2.6E-10::+,AACD01000043::70::100.0::4.3E-10::+ AN1T_04364
9 1 9 1 1 1 9 2QAN00022_D_1 AAAGCAAGTCGACGCCTGTGATCGCATCATGTGTTATTCTCTGTGTTTTGGAGATGCTGAGCTACGTCTG 47.14 30 65 FGSC_A4 AN1T_01649 conserved hypothetical protein (1737 nt) AN1T_01649::70::100.0::2.8E-10::+,AACD01000029::63::100.0::1.7E-8::- AN1T_01649
10 1 10 1 1 1 10 2QAN00024_P_13 GCTTAACTCCCGATGTTCAGAATGGTGAAAGGATTGAGGGAAGGATTGCGGATATCTTGGATTCTCCTAT 44.29 29 66 FGSC_A4 AN1T_08210 conserved hypothetical protein (1848 nt) AN1T_08210::70::100.0::2.9E-10::+,AACD01000081::70::100.0::4.3E-10::+ AN1T_08210
11 1 11 1 1 1 11 2QAN00027_L_13 TTCCTCCCTCATTTGTCTTCTCCAATTTGCAGCATAGTTGTTTCCGAAAGTGGTAACTCCTACGTTGTTA 41.43 29 70 FGSC_A4 AN1T_03752 conserved hypothetical protein (2538 nt) AN1T_03752::70::100.0::3.3E-10::+,AACD01000169::70::100.0::4.3E-10::+ AN1T_03752
12 1 12 1 1 1 12 2QAN00030_H_13 CTAATAAAAGATTATTACTCCGTAGGTCGCACAGTTTCAGACAACGAGCTGGCCCAATTGAGGTCAAATA 41.43 29 84 FGSC_A4 AN1T_01585 conserved hypothetical protein (5700 nt) AN1T_01585::70::100.0::3.9E-10::+,AACD01000098::70::100.0::4.3E-10::+ AN1T_01585
13 1 13 1 1 1 13 2QAN00002_D_13 ATATAGCATGTTACGTACATCAATCGTCTGTATCCCCGAGCCACCAACCGCCAAGCCTGTCCCAAATCCC 51.43 32 70 FGSC_A4 AACD01000007 Aspergillus nidulans contig AACD01000007::70::100.0::4.3E-10::-,AA788165.1::70::97.14286::6.9E-10::+ AACD01000007
14 1 14 1 1 1 14 2QAN00005_P_1 ATGTGCGGGCTCAGAAGCGCTTGGCGAAAAAGAAGCAAAAGTGAACTGTGAAGTGAATGTACATAGACTA 44.29 30 62 FGSC_A4 AACD01000003 Aspergillus nidulans contig AACD01000003::70::100.0::4.3E-10::- AACD01000003
15 1 15 1 1 1 15 2QAN00008_L_1 ATTGCGTCGCACCAGGCCCTACGACTACAGGGCTCTTCCTGAACGGCAAGTCAGACCAGATGCTCAAGAT 55.71 30 83 FGSC_A4 AN1T_03699 conserved hypothetical protein (744 nt) AN1T_03699::70::100.0::8.0E-11::+,AACD01000108::70::100.0::4.3E-10::- AN1T_03699
16 1 16 1 1 1 16 2QAN00011_H_1 TCTTAAAGAAAAGCTGCGGTTAGATAAGGTCTTTTCAGTGGGCGTGGCGATAGTAGGGGTTCTAATTGTT 42.86 29 67 FGSC_A4 AN1T_08028 conserved hypothetical protein (960 nt) AN1T_08028::70::100.0::1.6E-10::+,AACD01000010::70::100.0::4.3E-10::- AN1T_08028
17 1 17 1 1 1 17 2QAN00014_D_1 ATTGAAGAAGAAGCAGATTATCTCGCTGGGTGCTGGGTCTGATACGAGGGTCTTCCGGCTTTTGTCCTTG 50 29 83 FGSC_A4 AN1T_10561 conserved hypothetical protein (1149 nt) AN1T_10561::70::100.0::2.0E-10::+,AACD01000180::70::100.0::4.1E-10::+ AN1T_10561
18 1 18 1 1 1 18 2QAN00031_P_13 TTAAGCAAAAAAGAACCTCGTTTCTGATTGTGTTATCATCATTGCTGACGCTAATTTTAATCTGATTTTA Control At1g03905 At1g03905 --At1g03905
19 1 19 1 1 1 19 2QAN00017_L_13 ACCGTGACGGGGTTATCTCCAACTATAAGATAGTGTACAAGGTCTAAGGACCTCAGACGAACAGAAATGA 44.29 29 83 FGSC_A4 AACD01000092 Aspergillus nidulans contig AACD01000092::70::100.0::4.3E-10::- AACD01000092
20 1 20 1 1 1 20 2QAN00020_H_13 ATTATATCGTTTTCTGCGCTATCTTGTTCGTCATGGTGGTCGCAATTTACCTCTGGGTTCCGGAAACCAA 44.29 29 62 FGSC_A4 AN1T_04372 conserved hypothetical protein (1587 nt) AN1T_04372::70::100.0::2.7E-10::+,AACD01000043::70::100.0::4.3E-10::+ AN1T_04372

Total number of rows: 25392

Table truncated, full table size 5829 Kbytes.




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