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Platform GPL7430 Query DataSets for GPL7430
Status Public on Oct 07, 2008
Title MCI Human HEEBOChip 42k oligo array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer This array was assembled by/for researchers at the Mitchell Cancer Institute (MCI) of the University of South Alabama.
Manufacture protocol Stanford Functional Genomics Facility (SFGF) standard protocol.
 
Description Human Exonic Evidence-Based Oligonucleotide Chip (HEEBOChip), 70mer oligos.
 
Web link http://alizadehlab.stanford.edu/
Contributor(s) Hoek K
Submission date Oct 06, 2008
Last update date May 25, 2012
Contact name Keith S Hoek
E-mail(s) keith.hoek@usz.ch
URL http://www.jurmo.ch/work.html
Organization name Currently unaffilliated
Street address private
City Zürich
ZIP/Postal code 8004
Country Switzerland
 
Samples (4) GSM329155, GSM329195, GSM329201, GSM329202
Series (1)
GSE13144 Knockdown of CD133 in melanoma cells

Data table header descriptions
ID
Entrez_GeneID Entrez gene identification number
GB_ACC GenBank_ID; GenBank and RefSeq accession numbers
LOCUSLINK LocusLink_ID
ORF ORF Name
Entrez_Synonyms alternative gene symbol(s)
Entrez_descript Description
Probe_Name Probe manufacture information key
SEQUENCE Probe sequence
SPOT_ID

Data table
ID Entrez_GeneID GB_ACC LOCUSLINK ORF Entrez_Synonyms Entrez_descript Probe_Name SEQUENCE SPOT_ID
hHA032290 26100 26100 WIPI2 Atg21|CGI-50|DKFZP434J154|DKFZp686P02188|FLJ12979|FLJ14217|FLJ42984|WIPI-2 WD repeat domain, phosphoinositide interacting 2 altSplice.Grownto70||scl0007|scl0007.1|chr7|+|4977086|4977140|0|0|1/1(100%)|1/1(100%)|NA||0|26100 GTTTTACAAATACGCGAGAAGTGAAAGGGGCATCAAGAGCAGCTGGTCTTGGCCGTCGCGCTGTTGTCTG
hHA032291 5879 5879 RAC1 MGC111543|MIG5|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) altSplice.Grownto70||scl00012|scl00012.1|chr7|+|6182629|6182686|0|0|1/1(100%)|1/1(100%)|NA||0|5879 AGACAAGAAGCTGGTTGGAGAAACGTACGGTAAGGATATAACCTCCCGGGGCAAAGACAAGCCGATTGCC
hHA032292 83930 83930 STARD3NL MENTHO|MGC3251 STARD3 N-terminal like altSplice.Grownto70||scl00040|scl00040.1|chr7|+|37997406|37997459|0|0|1/1(100%)|1/1(100%)|NA||0|83930 CCTGTCCGCCGCAGAATTGACAACGGCAGTGACCAGTGCCTTTTTACTAGCAAAAGTGATCCTTTCGAAG
hHA032293 908 908 CCT6A CCT-zeta|CCT-zeta-1|CCT6|Cctz|HTR3|MGC126214|MGC126215|MoDP-2|TCP-1-zeta|TCP20|TCPZ|TTCP20 chaperonin containing TCP1, subunit 6A (zeta 1) altSplice.Grownto70||scl00064|scl00064.1|chr7|+|55861864|55861927|0|0|1/1(100%)|1/1(100%)|NA||0|908 GACCCCGCTCGTTTCTGGCGCTGGAGACATCAAACTTACTAAAGACGGCAATGTGCTGCTTCACGAAATG
hHA032294 114049 114049 WBSCR22 HASJ4442|HUSSY-3|MGC19709|MGC2022|MGC5140|PP3381|WBMT Williams Beuren syndrome chromosome region 22 altSplice.Grownto70||scl00075|scl00075.1|chr7|+|72520419|72520477|0|0|1/1(100%)|1/1(100%)|NA||0|114049 AGAGTGGTCTGGGGCTGAGTGAAAATCAGGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAG
hHA032295 114049 114049 WBSCR22 HASJ4442|HUSSY-3|MGC19709|MGC2022|MGC5140|PP3381|WBMT Williams Beuren syndrome chromosome region 22 altSplice.Grownto70||scl00076|scl00076.1|chr7|+|72523893|72523943|0|0|1/1(100%)|1/1(100%)|NA||0|114049 CGGGCTGTTCGGATGCGACGGAAGGTGGAGCATTTGAGAGAAGGGGCATCCGAGGCCACCAGACTCGGAG
hHA032296 7458 7458 EIF4H KIAA0038|WBSCR1|WSCR1 eukaryotic translation initiation factor 4H altSplice.Grownto70||scl00077|scl00077.1|chr7|+|73016673|73016733|0|0|1/1(100%)|1/1(100%)|NA||0|7458 TTCCCGAAGGGAATGGGTAGCTCTCGAGAATCTAGAGGTGGATGGGATTCCCGGGATGACTTCAATTCTG
hHA032297 2969 2969 GTF2I BAP-135|BAP135|BTKAP1|DIWS|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor II, i altSplice.Grownto70||scl00080|scl00080.1|chr7|+|73541265|73541325|0|0|1/1(100%)|1/1(100%)|NA||0|2969 ACAAAGTCAGCAGGCCCTTCTGAAACTGATGATGTTGATGAAAAACAGCCCCTATCGAAGCCTTTGCAAG
hHA032298 2969 2969 GTF2I BAP-135|BAP135|BTKAP1|DIWS|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor II, i altSplice.Grownto70||scl00081|scl00081.1|chr7|+|73545287|73545349|0|0|1/1(100%)|1/1(100%)|NA||0|2969 TTAAGGCATTCTACTCAACATGTCCCTTCAGAAACAAGTGAGGACCCTGAAGTTGAGGTGACTATTGAAG
hHA032299 1780 1780 DYNC1I1 DNCI1|DNCIC1 dynein, cytoplasmic 1, intermediate chain 1 altSplice.Grownto70||scl000103|scl000103.1|chr7|+|95069398|95069457|0|0|1/1(100%)|1/1(100%)|NA||0|1780 AATTGAGGCGGACCCTGCAGTGGGACACAGACCCCTCAGTGCTCCAGCTGCAGTCAGACTCAGAACTTGG
hHA032300 7982 7982 ST7 DKFZp762O2113|ETS7q|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 altSplice.Grownto70||scl000152|scl000152.1|chr7|+|116328681|116328749|0|0|1/1(100%)|1/1(100%)|NA||0|7982 CAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAA
hHA032301 4289 4289 MKLN1 FLJ11162|TWA2 muskelin 1, intracellular mediator containing kelch motifs altSplice.Grownto70||scl000174|scl000174.1|chr7|+|130579630|130579684|0|0|1/1(100%)|1/1(100%)|NA||0|4289 ACCTCCTTTTAGTCATTTCAGCTCCTGGCATCAGCTCTATTCAAATCTGGTTCAGATTTTACAGCTCTGG
hHA032302 altSplice.Grownto70||scl000179|scl000179.1|chr7|+|134773600|134773653|0|0|1/1(100%)|1/1(100%)|NA||0| CTTGGGTTTTATACAACTTGGATTTACACTGGGCAACGTGGTTGGAATGTATCTGGCTCAGAACTATGAT altSplice.Grownto70||scl000179|scl000179.1|chr7|+|134773600|134773653|0|0|1/1(100%)|1/1(100%)|NA||0|
hHA032303 6742 6742 SSBP1 SSBP single-stranded DNA binding protein 1 altSplice.Grownto70||scl000184|scl000184.1|chr7|+|140848826|140848875|0|0|1/1(100%)|1/1(100%)|NA||0|6742 GACTCATACTAGAAGCTACCCTAATGAAAGCTGGATTTTGAAAATACTTGGCAGCAACTCTTAGGTACAG
hHA032304 835 835 CASP2 CASP-2|ICH-1L|ICH-1L/1S|ICH1|NEDD2 caspase 2, apoptosis-related cysteine peptidase (neural precursor cell expressed, developmentally down-regulated 2) altSplice.Grownto70||scl000185|scl000185.1|chr7|+|142468403|142468463|0|0|1/1(100%)|1/1(100%)|NA||0|835 ACGGTAGGGGTGCTATTGGATCCCTTGGGCACCTCCTTCTGTTCACTGCTGCCACCGCCTCTCTTGCTCT
hHA032305 2115 2115 ETV1 DKFZp781L0674|ER81|MGC104699|MGC120533|MGC120534 ets variant gene 1 altSplice.Grownto70||scl000213|scl000213.1|chr7|-|13761389|13761442|0|0|1/1(100%)|1/1(100%)|NA||0|2115 TCCCTAACGATATTCTCTCAGGTACCTGACAATGATGAGCAGTTTGTACCAGACTATCAGGCTGAAAGTT
hHA032306 10551 10551 AGR2 AG2|GOB-4|HAG-2|XAG-2 anterior gradient homolog 2 (Xenopus laevis) altSplice.Grownto70||scl000217|scl000217.1|chr7|-|16581592|16581655|0|0|1/1(100%)|1/1(100%)|NA||0|10551 GGTGGCTATGAAACAACTGACAAACACCTTTCTCCTGATGGCCAGTATGTCCCCAGGATTATGTTTGTTG
hHA032307 altSplice.Grownto70||scl000238|scl000238.1|chr7|-|32817764|32817818|0|0|1/1(100%)|1/1(100%)|NA||0| CACAATGTCCGCTGAAAGATTGGATAACCAAGAAATGACTAATCAAGAGTCTGCCGTACATGTGAAAATG altSplice.Grownto70||scl000238|scl000238.1|chr7|-|32817764|32817818|0|0|1/1(100%)|1/1(100%)|NA||0|
hHA032308 5260 5260 PHKG1 PHKG phosphorylase kinase, gamma 1 (muscle) altSplice.Grownto70||scl000278|scl000278.1|chr7|-|55896412|55896466|0|0|1/1(100%)|1/1(100%)|NA||0|5260 GCCCACAGTGACCAGTACAGCTGAAGGACACTTATGAGACCAACACTTTCTTCTTCTTGGTGTTTGACCT
hHA032309 83862 83862 TMEM120A TMPIT transmembrane protein 120A altSplice.Grownto70||scl000300|scl000300.1|chr7|-|75228945|75229009|0|0|1/1(100%)|1/1(100%)|NA||0|83862 CTATGAGGGCTTCCAGTCCTGGATGTGGCGGGGCCTCACCTTCCTGCTGCCTTTTCTTTTCTTTGGACAC

Total number of rows: 41964

Table truncated, full table size 8978 Kbytes.






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