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Status
Public on Oct 20, 2008
Title
C. elegans 385K ChIP03
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans Manufacturer
Nimblegen Systems Inc
Manufacture protocol
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number
C4533-SET-01
Support
glass
Coating
aminosilane
Description
C. elegans whole genome tiling array (3 array set) at 86bp resolution, 385K features per array, 1.15M total features.
Web link
http://www.nimblegen.com/products/chip/index.html Contributor(s)
Lieb JD , Iniguez L Citation(s)
10504697 Submission date
Oct 14, 2008
Last update date
Jun 04, 2010
Contact name
Christina M Whittle
E-mail(s)
cwhittle@email.unc.edu Phone
9198433229
Organization name
University of North Carolina-Chapel Hill
Department
Biology
Lab
Jason Lieb
Street address
406 Fordham Hall, CB#3280
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599
Country
USA
Samples (17)
GSM417029 , GSM417030 , GSM417031 , GSM417032 , GSM417033 , GSM562195
GSM562198 ,
GSM562699 ,
GSM562700 ,
GSM562701 ,
GSM562702 ,
GSM562703 ,
GSM562760 ,
GSM562763 ,
GSM562766 ,
GSM714488 ,
GSM714491 Series (7)
GSE16621 Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22669 Desai PolII-4H8
GSE22714 DPY27_YPT47(V;X)_MXEMB
GSE22715 SDC3_YPT47(V;X)_MXEMB
GSE22742 Desai OD00079_HCP3_N2_MXEMB
GSE28852 Chromosome-biased binding and gene reguation by the C. elegans DRM complex [ChIP-chip]
GSE28853 Chromosome-biased binding and gene regulation by the C. elegans DRM complex
Data table header descriptions ID CHROMOSOME Chromosome name. WormBase Release WS120/ UCSC ce2
START Start coordinate. WormBase WS120/ UCSC ce2
STOP Stop coordinate. WormBase Release WS120/ UCSC ce2
STRAND Always + strand
PROBE_CLASS Probe sequence class
SEQUENCE Experimental or control probe sequence
GENOME_RELEASE The genome release that coordinates correspond to.
Data table ID CHROMOSOME START STOP STRAND PROBE_CLASS SEQUENCE GENOME_RELEASE CHRVP6543686
chrV
6543686
6543736
+
experimental
GTATGTTGTACGTGAAAGGTAGGAAAAATTGGAAGAATGTGTATCGTGGT
ws120/ce2
CHRVP12513643
chrV
12513643
12513693
+
experimental
AGATCTTCTTTATCACTAGACCAAGCGGCGGCACTGAAGCAAACAAAAAT
ws120/ce2
CHRVP16222696
chrV
16222696
16222746
+
experimental
TGAATACATATTGGAATTATAGATTCACATTCCAATTGAACAACCTCAAA
ws120/ce2
CHRVP7775890
chrV
7775890
7775940
+
experimental
ATCCCAGATTTTTTGAGATTTGTTTCTTAAAGTTAAAATACGTTTTCCAG
ws120/ce2
CHRVP10291287
chrV
10291287
10291337
+
experimental
CAGATATAATTTCTAAAAGTTTATACAAAAAAAAATATACAAAATTGATA
ws120/ce2
CHRVP18563529
chrV
18563529
18563579
+
experimental
TTCAATTTTCTTGCTTAAATTTCAAAAGATTTGACCAATTTTCTCTTTGG
ws120/ce2
CHRVP13886103
chrV
13886103
13886153
+
experimental
TTTTAAGAACGTAGAGAAAATTATACGTTCAAGAAATTTAGAAATAGTTC
ws120/ce2
CHRVP16268888
chrV
16268888
16268938
+
experimental
TGGAAGTGTTTTCAAAGCAATGAAAATCCTTCCGGAATAATAAATTCGTT
ws120/ce2
CHRVP19484994
chrV
19484994
19485044
+
experimental
CAATTAATTTCAAAAAAAAAGACCAAACATTTTGGTACAACAAGGATGCT
ws120/ce2
CHRVP13187024
chrV
13187024
13187074
+
experimental
GTGTTGATCATAAACTACATTGGATTTCTTGCAGATCGTTCGAAAATCAA
ws120/ce2
CHRVP7900154
chrV
7900154
7900204
+
experimental
TCTGACGTTTTCTCAACGCCCAAAGAAGTGTCAAGTTAAGGAATAATAAA
ws120/ce2
CHRVP7625297
chrV
7625297
7625347
+
experimental
ACAGTTCCTCCACTATCGTTCAAATCAGGATCATCAGCACCCAAGCCTTC
ws120/ce2
CHRVP15025154
chrV
15025154
15025204
+
experimental
CGAGAATTTGCTCGCCGAACGTCACGCCCTCCGATGGGTTTTTCTGTACG
ws120/ce2
CHRVP11549938
chrV
11549938
11549988
+
experimental
GACTTTGATTTTATGATATCCACTAAAATGATGGAAATTTATTTCAGACG
ws120/ce2
CHRVP14230710
chrV
14230710
14230760
+
experimental
GTCTGCGACTGGGAAGACAAATCGAGGATCCAATTAGCGCCACGTTTTTT
ws120/ce2
CHRVP8451433
chrV
8451433
8451483
+
experimental
AAAATGTCACATATATAAGCAGAAAAATTTCATACGGTTCCAAGCATAAA
ws120/ce2
CHRVP5669667
chrV
5669667
5669717
+
experimental
ACTTTATGAGAGTAATAGAGAACAGAGAAGTAACATCGGTCAGACGGAAA
ws120/ce2
CHRVP13926680
chrV
13926680
13926730
+
experimental
CGTGTTCAAGCTAATTCCCTGATAAAAACAAAAAATCAGTTCCTCACCTT
ws120/ce2
CHRVP5509428
chrV
5509428
5509478
+
experimental
CATAATTTCAGAATTGTCTGGATCCAATTGCTGATAGGCTTACAACGTTG
ws120/ce2
CHRVP6907424
chrV
6907424
6907474
+
experimental
TTCGAGTCTTGGATCATTTGTGATGTGCTCCTTCAGGTTGACAAGCAGCA
ws120/ce2
384806 41929 Kbytes .Supplementary file Size Download File type/resource GPL7484.ndf.gz
15.7 Mb
(ftp) (http) NDF
GPL7484.pos.gz
2.9 Mb
(ftp) (http) POS
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