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Platform GPL7485 Query DataSets for GPL7485
Status Public on Apr 01, 2012
Title Homo sapiens 389K Hg18 RefSeq promoter
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol 2006-07-18_HG18_RefSeq_promoter Promoter design based only on normal RefSeq genes (NM_) for human (HG18; NCBI Build 36). Includes 2200 bp upstream of transcriptional start and 500 bp downstream. Isothermal probes using dual tm/cycle restriction:, 50-75 bp, tm 76, 148 cycles, 15-mer frequency of 50. Interval spacing of 100 bp.
Catalog number C4226-00-01
 
 
Contributor(s) Sun M, Isaacs GD, Hah N, Heldring N, Fogarty EA, Kraus WL
Submission date Oct 14, 2008
Last update date Apr 01, 2012
Contact name W. Lee Kraus
E-mail(s) lee.kraus@utsouthwestern.edu
Organization name UT Southwestern Medical Center
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390-8511
Country USA
 
Samples (8) GSM333358, GSM333359, GSM333360, GSM333361, GSM333362, GSM333363 
Series (1)
GSE13200 Estrogen Regulates the JNK1 Genomic Localization Program in Breast Cancer Cells to Control Gene Expression and Cell Growth

Data table header descriptions
ID
SEQUENCE
RANGE_GB
RANGE_START start position
RANGE_END end position
SPOT_ID

Data table
ID SEQUENCE RANGE_GB RANGE_START RANGE_END SPOT_ID
CHR10P100017497 CAGCCCTGGTTCGTTGTCCCCCAAGTCGTAAGTGTGACATCTGAACCCGC NC_000010.9 100017497 100017546
CHR10P100017597 CACGGCGTGTACACAAACAAGACACGCAGGCACCCCTGAGGCCTGGGCGC NC_000010.9 100017597 100017646
CHR10P100017697 AGTTGGAAGCAGGTTGGTGAGCGACTGGAGGGCCGGGCTGAGGGTCCAAG NC_000010.9 100017697 100017746
CHR10P100017797 CAGACTCACAGAGAGACAGAAGGACAGATGGGACAGCAAGAGGCAGACCA NC_000010.9 100017797 100017846
CHR10P100017897 TCCGGGGCTGGGCGGGCGCCGCGGCGGAGCAGCGCTAACGGGCTCCCTCC NC_000010.9 100017897 100017946
CHR10P100017997 CCCGAGCTGGCCGCGGAGGAGGCCCCGCAGGCCCCGCCCCGGGCGGGCCT NC_000010.9 100017997 100018046
CHR10P100018097 ACACAGGCCAGGTGGCGGGGGCGCCCAGCCGCAGCCGGCGGGGCCGGGAA NC_000010.9 100018097 100018146
CHR10P100018197 GAGCTCTCGGGAAAGGGCGGCGCTGGGCCCGCGGCTGTTTTGCAGGGAGG NC_000010.9 100018197 100018246
CHR10P100018297 AACAAGGTAATGACGCCCACCTAGAGTCCCAGTCTGTGAGTCCTGGTGGG NC_000010.9 100018297 100018346
CHR10P100018397 CAGGGGCCGAATCTCACGAGCTCGGTCACTTAGGACAATGTAGACGCCCT NC_000010.9 100018397 100018446
CHR10P100018497 CGGTGCTCTCCTGCAGGAACAGGCGAGTCACCCAGAGTTTACTGAATACC NC_000010.9 100018497 100018546
CHR10P100018597 TGCAGCTGGGAACACTGAGCCCCAGGCGACATAACTTGCTCCTCCAGGCA NC_000010.9 100018597 100018646
CHR10P100018697 GGCCCTTGTCAGACTCACGGGAGGAGGGTGTTAGTGCAGGGAGCAGGGAC NC_000010.9 100018697 100018746
CHR10P100018797 CTGAACTGAGCACCTAGGTGCCTGAACCCCAGTCCAAGCCCCCAGTTTCT NC_000010.9 100018797 100018846
CHR10P100018897 TGGGCAGAGGGTTCCAGCCTCCCGGTTTCCTCCCTAGGCCCACAGCTGCC NC_000010.9 100018897 100018946
CHR10P100018997 GTTCATTCATCCCACAAGCCTTTATTGATTTTCTCCTACATGCTAGACAGGGT NC_000010.9 100018997 100019049
CHR10P100019097 GGCAGATGTGCAAGTAAGAATAAGCCTGGACAGGCAGAGTGTGATAGAGC NC_000010.9 100019097 100019146
CHR10P100019197 TGACCCTGCTGCCAGGGACCTGCCATCCACTCCTGGCTGCCCGTGTCCAA NC_000010.9 100019197 100019246
CHR10P100019297 CCATGATGAATCAGCAGGAAAGAATGCTCCCAGCCTCGGGTCAGTGGCAG NC_000010.9 100019297 100019346
CHR10P100019397 CAGGTATGCCTAAGCCCTCTCCTAGGGCCCAGCCACCTCTCATGCTGAGC NC_000010.9 100019397 100019446

Total number of rows: 389307

Table truncated, full table size 38270 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7485.ndf.gz 24.1 Mb (ftp)(http) NDF
GPL7485.pos.gz 3.0 Mb (ftp)(http) POS

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