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Status
Public on Feb 23, 2009
Title
ZB/SBS-NTU Plasmodium falciparum 3D7 10.4K v1.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Plasmodium falciparum Manufacturer
ZB lab/SBS-NTU
Manufacture protocol
Long oligonucleotides were selected using the program OligoRankPick, described in Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser & Zbynek Bozdech: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics 2007, 8:350.
Support
glass
Web link
http://zblab.sbs.ntu.edu.sg/OligoRankPick/index.html Contributor(s)
Hu G , Bozdech Z , Llinás M , Li J , Preiser PR Citation(s)
17880708 Submission date
Oct 16, 2008
Last update date
Feb 23, 2009
Contact name
Bernardo J Foth
E-mail(s)
bfoth@gmx.net, ZBozdech@ntu.edu.sg Organization name
Nanyang Technological University
Department
SBS
Street address
60 Nanyang Drive
City
Singapore
ZIP/Postal code
637551
Country
Singapore
Samples (299)
GSM334020 , GSM334027 , GSM334028 , GSM334029 , GSM484919 , GSM484920
GSM484921 ,
GSM484922 ,
GSM484923 ,
GSM484924 ,
GSM484925 ,
GSM484926 ,
GSM484927 ,
GSM484928 ,
GSM484929 ,
GSM484930 ,
GSM484931 ,
GSM484932 ,
GSM484933 ,
GSM484934 ,
GSM484935 ,
GSM484936 ,
GSM484937 ,
GSM484938 ,
GSM484939 ,
GSM484940 ,
GSM484941 ,
GSM484942 ,
GSM484943 ,
GSM484944 ,
GSM484945 ,
GSM484946 ,
GSM484947 ,
GSM484948 ,
GSM484949 ,
GSM484950 ,
GSM484951 ,
GSM484952 ,
GSM484953 ,
GSM484954 ,
GSM484955 ,
GSM484956 ,
GSM484957 ,
GSM484958 ,
GSM484959 ,
GSM484960 ,
GSM484961 ,
GSM484962 ,
GSM484963 ,
GSM484964 ,
GSM484965 ,
GSM484966 ,
GSM484967 ,
GSM484968 ,
GSM484969 ,
GSM484970 ,
GSM484971 ,
GSM484972 ,
GSM484973 ,
GSM484974 ,
GSM484975 ,
GSM484976 ,
GSM484977 ,
GSM484978 ,
GSM484979 ,
GSM484980 ,
GSM484981 ,
GSM484982 ,
GSM484983 ,
GSM484984 ,
GSM484985 ,
GSM484986 ,
GSM484987 ,
GSM484988 ,
GSM484989 ,
GSM484990 ,
GSM484991 ,
GSM484992 ,
GSM484993 ,
GSM484994 ,
GSM484995 ,
GSM484996 ,
GSM484997 ,
GSM484998 ,
GSM484999 ,
GSM485000 ,
GSM485001 ,
GSM485002 ,
GSM485003 ,
GSM485004 ,
GSM485005 ,
GSM485006 ,
GSM485007 ,
GSM485008 ,
GSM485009 ,
GSM485010 ,
GSM485011 ,
GSM485012 ,
GSM485013 ,
GSM485014 ,
GSM485015 ,
GSM485016 ,
GSM485017 ,
GSM485018 ,
GSM485019 ,
GSM485020 ,
GSM485021 ,
GSM485022 ,
GSM485023 ,
GSM485024 ,
GSM485025 ,
GSM485026 ,
GSM485027 ,
GSM485028 ,
GSM485029 ,
GSM485030 ,
GSM485031 ,
GSM485032 ,
GSM485033 ,
GSM485034 ,
GSM485035 ,
GSM485036 ,
GSM485037 ,
GSM485038 ,
GSM485039 ,
GSM485040 ,
GSM485041 ,
GSM485042 ,
GSM485043 ,
GSM485044 ,
GSM485045 ,
GSM485046 ,
GSM485047 ,
GSM485048 ,
GSM485049 ,
GSM485050 ,
GSM485051 ,
GSM485052 ,
GSM485053 ,
GSM485054 ,
GSM485055 ,
GSM485056 ,
GSM485057 ,
GSM485058 ,
GSM485059 ,
GSM485060 ,
GSM485061 ,
GSM485062 ,
GSM485063 ,
GSM485064 ,
GSM485065 ,
GSM485066 ,
GSM485067 ,
GSM485068 ,
GSM485069 ,
GSM485070 ,
GSM485071 ,
GSM485072 ,
GSM485073 ,
GSM485074 ,
GSM485075 ,
GSM485076 ,
GSM485077 ,
GSM485078 ,
GSM485079 ,
GSM485080 ,
GSM485081 ,
GSM485082 ,
GSM485083 ,
GSM485084 ,
GSM485085 ,
GSM485086 ,
GSM485087 ,
GSM485088 ,
GSM485089 ,
GSM485090 ,
GSM485091 ,
GSM485092 ,
GSM485093 ,
GSM485094 ,
GSM485095 ,
GSM485096 ,
GSM485097 ,
GSM485098 ,
GSM485099 ,
GSM485100 ,
GSM485101 ,
GSM485102 ,
GSM485103 ,
GSM485104 ,
GSM485105 ,
GSM485106 ,
GSM485107 ,
GSM485108 ,
GSM485109 ,
GSM485110 ,
GSM485111 ,
GSM485112 ,
GSM485113 ,
GSM485114 ,
GSM485115 ,
GSM485116 ,
GSM485117 ,
GSM485118 ,
GSM485119 ,
GSM485120 ,
GSM485121 ,
GSM485122 ,
GSM485123 ,
GSM485124 ,
GSM485125 ,
GSM485126 ,
GSM485127 ,
GSM485128 ,
GSM485129 ,
GSM485130 ,
GSM485131 ,
GSM485132 ,
GSM485133 ,
GSM485134 ,
GSM485135 ,
GSM485136 ,
GSM485137 ,
GSM485138 ,
GSM485139 ,
GSM485140 ,
GSM485141 ,
GSM485142 ,
GSM485143 ,
GSM485144 ,
GSM485145 ,
GSM485146 ,
GSM485147 ,
GSM485148 ,
GSM485149 ,
GSM485150 ,
GSM485151 ,
GSM485152 ,
GSM485153 ,
GSM485154 ,
GSM485155 ,
GSM485156 ,
GSM485157 ,
GSM485158 ,
GSM485159 ,
GSM485160 ,
GSM485161 ,
GSM485162 ,
GSM485163 ,
GSM485164 ,
GSM485165 ,
GSM1968168 ,
GSM1968169 ,
GSM1968170 ,
GSM1968171 ,
GSM1968172 ,
GSM1968173 ,
GSM1968174 ,
GSM1968175 ,
GSM1968176 ,
GSM1968177 ,
GSM1968178 ,
GSM1968179 ,
GSM1968180 ,
GSM1968181 ,
GSM1968182 ,
GSM1968183 ,
GSM1968184 ,
GSM1968185 ,
GSM1968186 ,
GSM1968187 ,
GSM1968188 ,
GSM1968189 ,
GSM1968190 ,
GSM1968191 ,
GSM1968192 ,
GSM1968193 ,
GSM1968194 ,
GSM1968195 ,
GSM1968196 ,
GSM1968197 ,
GSM1968198 ,
GSM1968199 ,
GSM1968200 ,
GSM1968201 ,
GSM1968202 ,
GSM1968203 ,
GSM1968204 ,
GSM1968205 ,
GSM1968206 ,
GSM1968207 ,
GSM1968208 ,
GSM1968209 ,
GSM1968210 ,
GSM1968211 ,
GSM1968212 ,
GSM1968213 ,
GSM1968214 ,
GSM1968215 Series (3)
GSE13251 Comparison of relative transcript and protein abundance in Plasmodium falciparum schizont stage parasites
GSE19468 Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum
GSE75807 Transcriptome profiling of genetically modified P. falciparum parasite strains with distinct drug resistance phenotypes
Data table header descriptions ID SEQUENCE Oligonucleotide sequence
GC_Percentage Percent GC in the oligonucleotide
ORF GeneID in PlasmoDB (at http://www.plasmodb.org)
GeneAnnotation Gene annotation
SPOT_ID
Data table ID SEQUENCE GC_Percentage ORF GeneAnnotation SPOT_ID aPFB0245c_0
AGGCGATTTACATGAATATGAAATAGCCATGTTAGTTAATCTTTTACCTAAGACCATATTAGAAGCTAGA
31.4
PFB0245c DNA-directed RNA polymerase II 16 kDa subunit, putative
aPFB0250w_0
ATTTCTAATGGACATTTTTTATCATTCGATTCAGAGAGAGGGTTACTACCTATGTTATCATTTATATCAT
28.6
PFB0250w hypothetical protein
aPFB0250w_1
GCCCCTCATATTTTCGAAAATAGCTTATACAAATGCCGAACAAATTAATTATGACACATTAACTGATGTA
31.4
PFB0250w hypothetical protein
aPFB0255w_0
TGAATGAACTCCTAAATAGTAACGCCACCATCATTTGTAATAACATCCCTATTCATATTAATCGTTTTGA
31.4
PFB0255w hypothetical protein
aPFB0256w_0
GTTAAAGGAGGAACTGAAAAATTATGTTAATCTAAATTCTCTATGTTCTTATCATTTTGATGAAAATAAT
22.9
PFB0256w hypothetical protein
aPFB0260w_0
TTTAAAATTAGCAAAAGATCTTGATGTCGAAGAACCCAAATTACCGGAGGATGTATATAAATCACATCTT
31.4
PFB0260w proteasome 26S regulatory subunit, putative
aPFB0260w_1
AATGGTTGTATTATTGAATGTAGTGTATATGCAGCTTTATCCTTAGGATTAGTTTTTGTTGGATCACAGA
31.4
PFB0260w proteasome 26S regulatory subunit, putative
aPFB0265c_0
GTGAACAAGATGGTGATATGGGTACTGTGGAGAACATAAACAAATTAGACAATAGAAATAAAGATGAAAA
31.4
PFB0265c DNA repair endonuclease, putative
aPFB0265c_1
GATATGAAAACCAACGTGAGCAAAAACAATATTACAGGAGTAAAGGAAAATAAAGTGGACAAAACAAATG
31.4
PFB0265c DNA repair endonuclease, putative
aPFB0265c_2
ATATATATAATATCGAACGAGGGGAAGATGAAAGAGAAAACGAATTTGTAGAGAATAAAATACAGTCGAC
31.4
PFB0265c DNA repair endonuclease, putative
aPFB0270w_0
AATAGTGTACATATTAACTGACGGCTTAAGTGGGTATATGCCTGAAGATATTTTAAAAGTAAACCCCAAT
32.9
PFB0270w hypothetical protein, conserved
aPFB0275w_0
TTTCGGTGGTATTAGAGGATGGAGATTATGTTTTATAGTTGTGGGTATATTGAGTGTTTTGTTAAGTATT
31.4
PFB0275w hypothetical protein, conserved
aPFB0275w_1
AAGAAAGTTTTGAATTATTCGCCTTATCATGTTTTTGTATTGGTTTATCATCAATAGCTGGTGTAGCAGT
31.4
PFB0275w hypothetical protein, conserved
aPFB0279w_0
CAGCGTTATAGTAACTCAAATAAAAATAAGCAGAATAATGAAGAGACCAATGTTTCAAAAATAATACCGT
28.6
PFB0279w hypothetical protein
aPFB0279w_1
GAATACGCCAAGAATTATAATATGTGCGTTGAGAAAGTAGAATGTCATAATAGTAAGTGTATTTTTCACG
31.4
PFB0279w hypothetical protein
aPFB0280w_0
AAACGTAAGCTATCTAGAACGTGTGGCCATATTGGAATGTAAAAAATACTGTAAAGGAGAAAAGAAATAT
31.4
PFB0280w hypothetical protein
aPFB0280w_1
GATGCAAAGGATAAATGATGCAGAGACAACACAAAATAATACATTGCATAAAGAGAACAAATTATGTACG
31.4
PFB0280w hypothetical protein
aPFB0280w_2
ACGCCTGATGAAAAGTATAAGGGTGGTGAAATAAAAGGGAATGATATAATAAAGGAGAGTGATATAATAA
31.4
PFB0280w hypothetical protein
aPFB0280w_3
AAAAAAATGTATACAAGAAAAGCAAAATGGAGAACACCAAATGACCAACGTTACAATTGTATTAGGAGGT
31.4
PFB0280w hypothetical protein
aPFB0285c_0
CCAACATGGTACCACAAAAAAATCACACACAAATATTTAACCCCTATGATAAAAGTATGAGGAATATTCA
31.4
PFB0285c hypothetical protein
10416 1273 Kbytes .Supplementary data files not provided
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