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Platform GPL7519 Query DataSets for GPL7519
Status Public on Oct 23, 2009
Title Texas State University/Ron Walter Oryzias latipes 8k array (version 1)
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Oryzias latipes
Manufacturer Ron Walter's Laboratory of Texas State university
Manufacture protocol Medaka expressed sequence tags (ESTs) were downloaded from NCBI GenBank (http://www.ncbi.nlm.nih.gov/). 60-mer oligonucleotides were designed for unigenes using commercial software, ArrayDesigner v3 (Telechem, Sunnyvale, CA, USA) and synthesized by IDT™ (Integrated DNA Technologies, Coralville, IA, USA). The oligonucleotides were diluted in 3×SSC (20×SSC: 3 M NaCl, 0.3 M sodium citrate pH 7.0) and spotted on aminosilane coated Superchip glass slides (Cat no. C18-5131-M20, Erie Scientific, Portsmouth, NH, USA) using a microarraying robot Virtek Chip Writer Pro (Virtek Vision, Waterloo, Ontario, Canada) with 16 Telechem Stealth pins (Cat no.: 946MP3, Telechem). These pins were designed with uptake channels and flat tips, and thus could effectively avoid "donut" spots. The slides were printed in the Genomic Analysis and Technology Core of the University of Arizona (Dr. Ryan Sprissler).
Support glass
 
 
Web link http://xiphophorus.org/Medaka_Array/Medaka_Slides.asp
Contributor(s) Walter R
Submission date Oct 23, 2008
Last update date Nov 13, 2009
Contact name Ziping Zhang
E-mail(s) Ziping.Zhang@txstate.edu
Phone 512-245-0358
Fax 512-245-1922
URL http://www.xiphophorus.org/
Organization name Texas State University
Department Chemistry & Biochemistry
Lab Molecular Biosciences Research Group
Street address 601 University Drive/Cent. 419
City San Marcos
State/province TX
ZIP/Postal code 78666-4616
Country USA
 

Data table header descriptions
ID Feature ID
Name Feature Name
GO_MF Gene Ontology Molecular Function
GO_BP Gene Ontology Biological Process
GO_CC Gene Ontology Cellular Component
Pathway References to Gene MicroArray Pathway Profiler and KEGG: Kyoto Encyclopedia of Genes and Genomes.
GB_ACC GenBank or RefSeq accession number
SEQUENCE

Data table
ID Name GO_MF GO_BP GO_CC Pathway GB_ACC SEQUENCE
AJ250401 gnl|UG|Ola#S14562071 Oryzias latipes partial mRNA for Vax1 transcription factor /cds=(3,705) /gb=AJ250401 /gi=7635908 /ug=Ola.1 /len=705 GO:0003677|GO:0003700|GO:0031490 GO:0000122|GO:0001747|GO:0001764|GO:0006355|GO:0007275|GO:0007399|GO:0007406|GO:0007411|GO:0007417|GO:0007420|GO:0030154|GO:0045449 GO:0005634|GO:0005667 - AJ250401 AATCTGTCAGAAACACAGGTGAAAGTCTGGTTTCAGAACCGCCGCACGAAGCAAAAGAAG
AF128814 gnl|UG|Ola#S14562091 Oryzias latipes RNA binding protein 42Sp43 mRNA, complete cds /cds=(10,1116) /gb=AF128814 /gi=5231229 /ug=Ola.7 /len=1278 GO:0003676|GO:0003677|GO:0003700|GO:0003709|GO:0008270 GO:0006383|GO:0009303 GO:0005622 - AF128814 CAAACCTCCCATTCCTTTGGAAAGTCCTGCTGTGGCACCAGTTAAATGAAAATTCAGATC
AB015874 gnl|UG|Ola#S14562173 Oryzias latipes mRNA for guanylate cyclase OlGC-R2, complete cds /cds=(155,3538) /gb=AB015874 /gi=4521263 /ug=Ola.68 /len=3967 GO:0004383|GO:0004672|GO:0004713|GO:0004872|GO:0005524 GO:0006182|GO:0006468|GO:0007168|GO:0007242|GO:0007601|GO:0050896 GO:0005640|GO:0005887|GO:0016020|GO:0016021 path:hsa00230|path:hsa04540|path:hsa04730|path:bta04540|path:bta00230|path:bta04730 AB015874 CGGACCGAGGAGATGGAGTCTAATGTGGAACTATCAATAGAAGCTAAACATGCTGACTCA
AB015874b gnl|UG|Ola#S14562173 Oryzias latipes mRNA for guanylate cyclase OlGC-R2, complete cds /cds=(155,3538) /gb=AB015874 /gi=4521263 /ug=Ola.68 /len=3967 GO:0004383|GO:0004672|GO:0004713|GO:0004872|GO:0005524 GO:0006182|GO:0006468|GO:0007168|GO:0007242|GO:0007601|GO:0050896 GO:0005640|GO:0005887|GO:0016020|GO:0016021 path:hsa00230|path:hsa04540|path:hsa04730|path:bta04540|path:bta00230|path:bta04730 AB015874 CGGACCGAGGAGATGGAGTCTAATGTGGAACTATCAATAGAAGCTAAACATGCTGACTCA
AB015874c gnl|UG|Ola#S14562173 Oryzias latipes mRNA for guanylate cyclase OlGC-R2, complete cds /cds=(155,3538) /gb=AB015874 /gi=4521263 /ug=Ola.68 /len=3967 GO:0004383|GO:0004672|GO:0004713|GO:0004872|GO:0005524 GO:0006182|GO:0006468|GO:0007168|GO:0007242|GO:0007601|GO:0050896 GO:0005640|GO:0005887|GO:0016020|GO:0016021 path:hsa00230|path:hsa04540|path:hsa04730|path:bta04540|path:bta00230|path:bta04730 AB015874 CGGACCGAGGAGATGGAGTCTAATGTGGAACTATCAATAGAAGCTAAACATGCTGACTCA
AB015874d gnl|UG|Ola#S14562173 Oryzias latipes mRNA for guanylate cyclase OlGC-R2, complete cds /cds=(155,3538) /gb=AB015874 /gi=4521263 /ug=Ola.68 /len=3967 GO:0004383|GO:0004672|GO:0004713|GO:0004872|GO:0005524 GO:0006182|GO:0006468|GO:0007168|GO:0007242|GO:0007601|GO:0050896 GO:0005640|GO:0005887|GO:0016020|GO:0016021 path:hsa00230|path:hsa04540|path:hsa04730|path:bta04540|path:bta00230|path:bta04730 AB015874 CGGACCGAGGAGATGGAGTCTAATGTGGAACTATCAATAGAAGCTAAACATGCTGACTCA
AB041333 gnl|UG|Ola#S14562040 Oryzias latipes mdGnRH mRNA for prepro-gonadotropin-releasing hormone, complete cds /cds=(70,345) /gb=AB041333 /gi=10641047 /ug=Ola.147 /len=429 - - - - AB041333 CCACCTGGAGGAGTCATCTTTAGCAAAGATTTACAGAATAAAAGGGCTTCTTGGGAGTGT
AB033755 gnl|UG|Ola#S14562048 Oryzias latipes gel-b mRNA for gelatinase B, complete cds /cds=(145,2217) /gb=AB033755 /gi=6116885 /ug=Ola.153 /len=2803 GO:0004222|GO:0008237|GO:0008270 GO:0000270|GO:0006508 GO:0005578 path:hsa04670 AB033755 ACTTCTATGATGTGAGATTTGGCTTCGTTTATGGTGATAAATCCTTACGCATGTGTTGGC
AB001604 gnl|UG|Ola#S14562057 Oryzias latipes mRNA for KFH-R, complete cds /cds=(57,1130) /gb=AB001604 /gi=1881389 /ug=Ola.159 /len=1277 GO:0001584|GO:0004871|GO:0004872|GO:0004930|GO:0009881|GO:0009883 GO:0007165|GO:0007186|GO:0007601|GO:0007602|GO:0018298|GO:0050896 GO:0005887|GO:0016020|GO:0016021 - AB001604 CTTTGGCAAACAGGTGGATGATGGTTCTGAAGTTTCTACATCAAAGACAGAGGTCTCCTC
AJ250403 gnl|UG|Ola#S14562069 Oryzias latipes partial mRNA for Vsx1 transcription factor /cds=(1,465) /gb=AJ250403 /gi=7635912 /ug=Ola.167 /len=1081 GO:0003677|GO:0003700 GO:0001747|GO:0006350|GO:0006355|GO:0007275|GO:0007601|GO:0008285|GO:0045165|GO:0045449|GO:0050896 GO:0005634|GO:0005667 - AJ250403 CGGCGAAAGTCTGTGTTGAGTGTCGTTTTGTTCCGAGTTTGTTTTCTATCTATATTTTCT
BJ018144 gnl|UG|Ola#S14494205 BJ018144 MF01SSA cDNA Oryzias latipes cDNA clone MF01SSA053F04 3 , mRNA sequence /clone=MF01SSA053F04 /clone_end=3 /gb=BJ018144 /gi=17386873 /ug=Ola.255 /len=512 - - - - BJ018144 CAGAGATGCTTTAACCCCTTCATGCCCACTGGTGCAAGGAAGAACCACTCCTCCTCAAAC
BJ730751 gnl|UG|Ola#S19080116 BJ730751 MF015DA cDNA Oryzias latipes cDNA clone MF015DA009i23 5 , mRNA sequence /clone=MF015DA009i23 /clone_end=5 /gb=BJ730751 /gi=45298063 /ug=Ola.261 /len=718 GO:0003993|GO:0004725|GO:0004726|GO:0016787 GO:0006470|GO:0007268 GO:0005625|GO:0005737|GO:0019717 path:rno00361|path:rno00740|path:rno04520|path:mmu00361|path:mmu04520|path:mmu00740|path:hsa00361|path:hsa04520|path:hsa00740 BJ730751 GGCGAACCCCTAACTGAAATCTTCACGGATTCAAGGAGAAACCTCAAATATCAACCTGAT
BJ717267 gnl|UG|Ola#S19050956 BJ717267 MF01FFA cDNA Oryzias latipes cDNA clone MF01FFA015n05 3 , mRNA sequence /clone=MF01FFA015n05 /clone_end=3 /gb=BJ717267 /gi=45258108 /ug=Ola.270 /len=785 GO:0003954|GO:0005506|GO:0008137|GO:0010181|GO:0016491|GO:0016651|GO:0046872|GO:0051287|GO:0051539 GO:0006118|GO:0006120 GO:0005615|GO:0005624|GO:0005739|GO:0005743|GO:0005747|GO:0008372 path:hsa00190|path:cfa00190|path:rno00190|path:mmu00190 BJ717267 GGCCTGGATGAGTCCATCAAAGTCCATCAGAACCTCCTCACACACATTCTTGGGAATGAG
BJ741660 gnl|UG|Ola#S19123457 BJ741660 MF015DA cDNA Oryzias latipes cDNA clone MF015DA007g01 3 , mRNA sequence /clone=MF015DA007g01 /clone_end=3 /gb=BJ741660 /gi=45338929 /ug=Ola.276 /len=946 GO:0003774|GO:0005524 GO:0001757 GO:0005859|GO:0016459 - BJ741660 CTCTCACAGCATCATCAAGGTGCAGTTGAGCATCCCTTCAGTTGAGCCTGAACATTTCTC
BJ746472 gnl|UG|Ola#S19128291 BJ746472 MF015DA cDNA Oryzias latipes cDNA clone MF015DA013i12 3 , mRNA sequence /clone=MF015DA013i12 /clone_end=3 /gb=BJ746472 /gi=45343740 /ug=Ola.359 /len=855 GO:0004579|GO:0016740 GO:0018279 GO:0005615|GO:0005783|GO:0005789|GO:0008250|GO:0016020|GO:0016021 path:mmu01030|path:mmu00510|path:ssc00510|path:ssc01030|path:hsa00510|path:hsa01030 BJ746472 GTATTTACCTCCTTTTCTCTGGAGAAAGGTTCGGACAAACGGGTCGATTCTCACAAACTC
AU167590 gnl|UG|Ola#S14462078 AU167590 Ol-br-ad cDNA Oryzias latipes cDNA clone br0820, mRNA sequence /clone=br0820 /gb=AU167590 /gi=12589659 /ug=Ola.365 /len=730 - - - - AU167590 CATATAACTTGCTTCACTTGAGGAGGGGCTCCAAGGTATTTTCAAAGCTGTATTGTGGTG
AU167656 gnl|UG|Ola#S14462116 AU167656 Ol-br-ad cDNA Oryzias latipes cDNA clone br0886, mRNA sequence /clone=br0886 /gb=AU167656 /gi=12589725 /ug=Ola.372 /len=670 GO:0004866|GO:0004867 GO:0007417|GO:0007422 GO:0005615 - AU167656 TTGAGATTCGTCTCCGTTTCAATTTTGAATTTGGGAAGATACAAATCGACCTTCGGTGCT
BJ740490 gnl|UG|Ola#S19122334 BJ740490 MF015DA cDNA Oryzias latipes cDNA clone MF015DA003h23 3 , mRNA sequence /clone=MF015DA003h23 /clone_end=3 /gb=BJ740490 /gi=45337760 /ug=Ola.378 /len=894 - - - - BJ740490 CAGAGGCTAATGCTGGTTATGTGTGTGAGTTTGCTCCATGTCTTAGACCAACTAAAGGCA
BJ716526 gnl|UG|Ola#S19050586 BJ716526 MF01FFA cDNA Oryzias latipes cDNA clone MF01FFA013a19 3 , mRNA sequence /clone=MF01FFA013a19 /clone_end=3 /gb=BJ716526 /gi=45257367 /ug=Ola.459 /len=773 GO:0005506|GO:0008121|GO:0016491|GO:0046872|GO:0051536|GO:0051537 GO:0006118|GO:0006810 GO:0005739|GO:0005743|GO:0005746|GO:0016020|GO:0016021|GO:0045285 path:dre00190|path:mmu00190|path:bta00190 BJ716526 TTCTCTGTGCGATGGCGGACGAACAAAGGCTTCCCTCTCCACTTGAAGGTCATGTTTTTC
AU168962 gnl|UG|Ola#S14462813 AU168962 Ol-br-ad cDNA Oryzias latipes cDNA clone br3916, mRNA sequence /clone=br3916 /gb=AU168962 /gi=12591031 /ug=Ola.467 /len=701 - - - - AU168962 TAATAACGAGCACGGGAGTATCAGAGAAACAACAAGAACAGTCAGAATCCAGACGAGAGT

Total number of rows: 8046

Table truncated, full table size 2426 Kbytes.




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