NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL7531 Query DataSets for GPL7531
Status Public on Nov 19, 2008
Title CRC-OHS Porphyromonas gingivalis W83 1977v2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Porphyromonas gingivalis
Manufacturer Oligonucleotide probes synthesised by Geneworks (Illumina Oligator), Microarrays printed by The Australian Genome Research Facility
Manufacture protocol Microarrays consist of 1,977 60-mer oligonucleotides based on the >1,990 predicted open reading frames of P. gingivalis W83 (RefSeq Acc No NC_002950.2). Additional probes based on predicted protein coding regions found in the Los Alamos National Laboratory Oralgen project (www.oralgen.lanl.gov) and probes for normalisation and validation are also included. The full complement of probes are printed three times onto each microarray slide.
Support glass
Coating aminosilane
 
 
Contributor(s) Mitchell HL, Dashper SG, Slakeski N, Cleal S, Reynolds EC
Submission date Oct 27, 2008
Last update date Nov 19, 2008
Contact name Helen Mitchell
Organization name The University of Melbourne
Department School of Dental Science
Street address 720 Swanston St
City Parkville
ZIP/Postal code 3010
Country Australia
 
Samples (6) GSM337709, GSM337716, GSM337717, GSM337718, GSM337719, GSM337720
Series (1)
GSE13375 Porphyromonas gingivalis W50 Heme-excess vs Heme-limitation

Data table header descriptions
ID
GB_RANGE Location of "LANL" probes
SEQUENCE Unique 60-mer Oligonucleotide
ORF Based on locus tags of NC_002950.2
GENOME_ACC
Cross Reference For cross referencing experimental data
ORGANISM
RefSeq NC_002950.2 Locus Tag (TIGR annotation) Based on TIGR genome database
LANL LocusTag Based on LANL genome database
Gene_Product Based on NC_002950.2
SPOT_ID

Data table
ID GB_RANGE SEQUENCE ORF GENOME_ACC Cross Reference ORGANISM RefSeq NC_002950.2 Locus Tag (TIGR annotation) LANL LocusTag Gene_Product SPOT_ID
PG0001 ACAGTTCGATGTCAATTTGCTACACAGGCACATGCCCAATGCAGCCACCCATAGCGAAGC PG0001 NC_002950.2 Pl7_D05 Porphyromonas gingivalis W83 PG0001 PG0001 chromosomal replication initiation protein
PG0002 ATGATCCATCCCACAGCGATAGTAGAAGACGGTTGTGTGCTTGGTCAGGGTACACGCGTA PG0002 NC_002950.2 Pl7_I09 Porphyromonas gingivalis W83 PG0002 PG0002 hexapeptide transferase family protein
PG0003 AGCCGGCCGTTCCTATATTCGTCATTATCAGCGGGGCTTTTGTCTTGGGACGCAATGAGA PG0003 NC_002950.2 Pl10_O10 Porphyromonas gingivalis W83 PG0003 PG0003 hypothetical protein
PG0004 GAATAAGAAAAGACTCGTCGTCTTGAGTGGCGCAGGCATGAGTGCCGAAAGCGGCATATC PG0004 NC_002950.2 Pl8_I06 Porphyromonas gingivalis W83 PG0004 PG0004 NAD-dependent deacetylase
PG0005 TACAATATCTCCTGACCCTCTACATCGCATACCGAGGAGGACAGGCCCTACCGCAAAAGA PG0005 NC_002950.2 Pl11_B09 Porphyromonas gingivalis W83 PG0005 PG0005 hypothetical protein
PG0006 TGTTTCACTATGCTCTGCCGGCGGTGGTGGGTACAGCAGTCAATTCGCTATACAACATCG PG0006 NC_002950.2 Pl11_D21 Porphyromonas gingivalis W83 PG0006 PG0006 MATE efflux family protein
PG0007 CGAAATGGAAAATTCACGAGCCTAAACCGTCTGGAGGCGGCAGCCCTTTCTCTGTCATGA PG0007 NC_002950.2 Pl11_E16 Porphyromonas gingivalis W83 PG0007 hypothetical protein
PG0008 GGGGAACTCCTTGTAGCAGACATCACCTACGTGGCTTACCAAGATGGGTTTGCCTATCTC PG0008 NC_002950.2 Pl11_H04 Porphyromonas gingivalis W83 PG0008 PG0007 ISPg5 transposase Orf2
PG0010 CTTTACACAAACATTCCGCAACAGCCTGGAGTACAGCTATCAGGAAGCAACCCGTCTCGG PG0010 NC_002950.2 Pl9_C18 Porphyromonas gingivalis W83 PG0010 PG0009 ATP-dependent Clp protease, ATP-binding subunit ClpC
PG0011 CCAGCAGTCCAAAGACTATCCCTTTCTCCTCTTCGGGGGAGTCGAGAGCAAAGATGTCAA PG0011 NC_002950.2 Pl7_D20 Porphyromonas gingivalis W83 PG0011 PG0010 glycosy hydrolase family protein
PG0012 TCTGGAGAAACATCTGGTAGAAAACCTCAACTGTATTCGGCACTACCCCGAGCCGGATGC PG0012 NC_002950.2 Pl7_I20 Porphyromonas gingivalis W83 PG0012 PG0011 L-threonine-O-3-phosphate decarboxylase, putative
PG0013 AGTTGCCGGAGCCTTGCACGTTATTATCGGGGCTTTTATCAATCTGGAAGCTGTCGCTCG PG0013 NC_002950.2 Pl7_K08 Porphyromonas gingivalis W83 PG0013 PG0012 hypothetical protein
PG0016 TACGGGTAATGAAGGATTATATTGGCTGGATCAGGTCCGTAGCCGTTTCCCTGACCTCCC PG0016 NC_002950.2 Pl7_N03 Porphyromonas gingivalis W83 PG0016 PG0013 sigma-54 dependent DNA-binding response regulator
PG0017 GTTTTTGCAGCCGGACTCGTTATCTTTTCCGCCTTGCGGTTGCGTTTACTTTATCGGCGC PG0017 NC_002950.2 Pl7_P05 Porphyromonas gingivalis W83 PG0017 PG0014 sensor histidine kinase
PG0018 CTTCTGTATCGAAGGAAATACGGGAGCTGAGCAATAGAACGGAGCAGCAGACCTCCCTGT PG0018 NC_002950.2 Pl8_B14 Porphyromonas gingivalis W83 PG0018 PG0015 hypothetical protein
PG0020 GTTGGCGCTGTGGCAAAAAGAAGAAACAGGAGGAAGAAGTTGTCTCTGTCACCCGGGAAC PG0020 NC_002950.2 Pl8_G19 Porphyromonas gingivalis W83 PG0020 PG0017 MarR family transcriptional regulator
PG0021 ATGAAAATAGGTGCCATAGACCTCGGGGTAGAGCCTTTGCTACTCGCTCCGATGGAGGAT PG0021 NC_002950.2 Pl10_N11 Porphyromonas gingivalis W83 PG0021 PG0018 NifR3 family TIM-barrel protein
PG0022 TTCATCCGTCCAAATCGGTGGCCCGACAGGTGCTTTCATCGTTATCGTCTACGGCATCAT PG0022 NC_002950.2 Pl10_N20 Porphyromonas gingivalis W83 PG0022 PG0019 sulfate permease family protein
PG0024 AAGTCCCCGAACCTACTCTGAGGCGTCTTCCCTGGTATTTGTCTTACGTCCAGCTTTTGC PG0024 NC_002950.2 Pl8_H09 Porphyromonas gingivalis W83 PG0024 PG0020 redox-sensing transcriptional repressor Rex
PG0025 TCTCAGGAGATCCACTATGAGACGGAGCTGGTGGTTCGTATAGATCGTATCGGCAAGTGC PG0025 NC_002950.2 Pl8_H12 Porphyromonas gingivalis W83 PG0025 PG0021 fumarylacetoacetate hydrolase family protein

Total number of rows: 2688

Table truncated, full table size 364 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL7531.gal.gz 52.1 Kb (ftp)(http) GAL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap