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Platform GPL7540 Query DataSets for GPL7540
Status Public on Dec 22, 2008
Title Agilent-scanner-UNC-custom-4X44K-without-Virus [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent
Manufacture protocol agilent printing protocol
 
 
Submission date Oct 29, 2008
Last update date Jan 18, 2013
Contact name Yuan Qi
E-mail(s) yqi1@mdanderson.org
Organization name University of Texas M.D. Anderson Cancer Center
Department Bioinformatics & Computational Biology
Street address 1400 Pressler St
City Houston
State/province TX
ZIP/Postal code 77030-4008
Country USA
 
Samples (32) GSM338295, GSM338296, GSM338297, GSM338298, GSM338299, GSM338300 
Series (3)
GSE13397 HNSCC samples vs. normal tonsil samples: self-self hybridization design
GSE13398 HNSCC samples vs. normal tonsil samples: reference design
GSE13399 Transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples

Data table header descriptions
ID Agilent probe name
ORF_LIST Gene ID
GB_LIST Refseq ID
GB_LIST Genebank accession number
Gene Symbol Gene Symbol
Gene Description Gene Description
Chromosome Number Chromosome Number
Chromosome Map Location Chromosome Map Location
SEQUENCE
Chromosome Coordinates Chromosome Coordinates
DCC Gene Symbol DCC Gene Symbol from TCGA project
SPOT_ID

Data table
ID ORF_LIST GB_LIST GB_LIST Gene Symbol Gene Description Chromosome Number Chromosome Map Location SEQUENCE Chromosome Coordinates DCC Gene Symbol SPOT_ID
AA224205_1_240 CCAGTGTTCAGATAAATAAATGTCAGAGCTAATCCAAATATGAAACTTGAAATTTTCCCA [36.1:11:125032033-125031972:-] chr11:[36.1:11:125031972-125032032:-] AA224205_1_240
AA224205_1_264 AGAGCTAATCCAAATATGAAACTTGAAATTTTCCCACCATTCTATACAAATTCCCACAGC [36.1:11:125032009-125031948:-] chr11:[36.1:11:125031948-125032008:-] AA224205_1_264
AA434256_1_163 TAGCAGAGGACTCCCTGGTTTTCCTTTGGATGGAAGTTTCCTGACTTTCTACTTCTGGAA [36.1:9:35400439-35400378:-] chr9:[36.1:9:35400378-35400438:-] AA434256_1_163
AA434256_1_243 ATGGGCTTCCTCCAGGATGAAATCGGACAACTGCCCAATGACAGCAAGTAAAGAAAGTAT [36.1:9:35400359-35400298:-] chr9:[36.1:9:35400298-35400358:-] AA434256_1_243
AA436007_1_169 TAAACCGAGGTCGGCTGCCATGATGAGGACATGGTTTCACATGAGTGCCTTGTTTTTAAT [36.1:11:95551073-95551132:+] chr11:[36.1:11:95551073-95551133:+] AA436007_1_169
AA436007_1_93 AGACATCCGTGGGTTTGTGCAACTCTCTCAGACAGTTTTATGAGGAGGATCAAAGATGTG [36.1:11:95550997-95551056:+] chr11:[36.1:11:95550997-95551057:+] AA436007_1_93
AA491949_1_164 AAGGCCAGGAGCGGTACTCATGTGCATGAGTACCTGTACCACTAAAACAGATTTGGGAGG [36.1:8:30395968-30395907:-] chr8:[36.1:8:30395907-30395967:-] AA491949_1_164
AA491949_1_30 TGCAGATGATGACATTTACAGCAAATGATAACAGGGGCCTATCTTTAAAAGGACAAGCAA [36.1:8:30396102-30396041:-] chr8:[36.1:8:30396041-30396101:-] AA491949_1_30
AA553367_1_13 CCGTCCTCTTCCACACCATACAGACAGCCTGTCAGTGGCAGAGTAAGGCCAGCATGCAAA [36.1:14:61240054-61239993:-] chr14:[36.1:14:61239993-61240053:-] AA553367_1_13
AA553367_1_61 CCAGCATGCAAATAGAGCAAAGGTATACAAGCCAAGTAATATCAAGACAAAAGTCAGGGA [36.1:14:61240006-61239945:-] chr14:[36.1:14:61239945-61240005:-] AA553367_1_61
AA563634_1_239 AACCTGGCAGAGCAGCATCTTTTGTGGGGTTAAAGAGGAGAGTGTGTGCTGGAAAGGGCG [36.1:NOMATCH:NOMATCH-NOMATCH:NOMATCH] AA563634_1_239 AA563634_1_239
AA563634_1_63 TTAACATCCCCCCAGCATAGCTGGTTCTCTCTGAGGTGGTCCAAACAGAGCTGCACCTGC [36.1:17:4330476-4330535:+] chr17:[36.1:17:4330476-4330536:+] AA563634_1_63
AA699533_1_267 AGCGAGTCTGAAAGTGCAGTTCATTTTGTAACTGACATAGCTGAATGATCAGTAGTCAGG [36.1:15:93312524-93312583:+] chr15:[36.1:15:93312524-93312584:+] AA699533_1_267
AA699533_1_298 CTGACATAGCTGAATGATCAGTAGTCAGGAAAGGGGAGGAAAGCTGCATGTACCATCTGT [36.1:15:93312555-93312614:+] chr15:[36.1:15:93312555-93312615:+] AA699533_1_298
AA702142_1_121 TTTCCTGGTTTCTCATTTTGAGGGCAATAGGAAATGCAACAAACTCCAGGACTGCTGCTC [36.1:15:97074807-97074746:-] chr15:[36.1:15:97074746-97074806:-] AA702142_1_121
AA702142_1_396 AY332722.1| AC055807.11 AY332722.1 >gi|32402492|gb|AY332722.1| Homo sapiens insulin-like growth factor 1 receptor (IGF1R) gene, complete cds TTTTGTGGGAAAGTGAAGGCATCTGCACCTGAAATGAAATACCAGAAAGCCTCCACAGCA [36.1:15:97074531-97074470:-] chr15:[36.1:15:97074470-97074530:-]
AA703400_1_33 CCAGACTTGAAATCAGGCACTCTGATCTAGGGGTTATTTAGGAAAATTAAGAGGCAGGCC [36.1:5:126298068-126298127:+] chr5:[36.1:5:126298068-126298128:+] AA703400_1_33
AA703400_1_362 AAAGTGTAGAAAAGGAGGATCTCAGGCTCAAAAATCTTCTCATCCTGTCTACCAGGCCCA [36.1:5:126298397-126298456:+] chr5:[36.1:5:126298397-126298457:+] AA703400_1_362
AA707678_1_384 ATTTCAAAGATGCATGCTGAATCCACTGCCCTCAAATGGCAGAGAGAGGATGCAAACACA [36.1:6:42824620-42824559:-] chr6:[36.1:6:42824559-42824619:-] AA707678_1_384
AA707678_1_450 CAATGCAGCCATTTCGCAGCCTTCCTACTGTGTTTGAACTCAGAAACAGCTTTATCTCCA [36.1:6:42824554-42824492:-] AA707678_1_450 AA707678_1_450

Total number of rows: 39980

Table truncated, full table size 7838 Kbytes.




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