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Platform GPL7613 Query DataSets for GPL7613
Status Public on Nov 11, 2008
Title PICME Poplar 15K Series 1
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organisms Populus trichocarpa x Populus deltoides; Populus tremula x Populus alba
Manufacturer Austrian Research Centers GmbH - ARC, PICME
Manufacture protocol Spottingbuffer: 3xSSC+ 1,5MBetain
Spottingplate setting: Biozym 384
Arrayer Hardware: GeneMachines Omnigrid II
Arrayer Software: OmniGrid Gridder 2.2.13
Humidity: 40%
Dipping time in sec: 1
Support glass
Coating aminosilane
 
Description This platform represents all slides of the two series 1_1_1 and 1_2_2, which are fully identical in their properties except the lot number.
PICME Poplar 15K 1_1_1 uses lot number: 14204000B
PICME Poplar 15K 1_2_2 uses lot number: 19404000B
Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane
Number of spots: 15.488
Number of pins/blocks: 32
Spottdistance in µm: 200
Recurrances spots/slide: 2
Number of spots vertical: 22
Number of spots horinzontal: 22
Vertical offset of first block in µm: 1200
Horizontal offset of first block in µm: 3150
 
Contributor(s) Martin F, Leple JC, Fluch S
Submission date Nov 10, 2008
Last update date Nov 14, 2008
Contact name Dieter Kopecky
URL http://www.picme.at
Organization name Austrian Research Centers GmbH - ARC
Department Biogenetics/Natural Resources
Lab PICME
Street address Campus Seibersdorf
City Seibersdorf
ZIP/Postal code A-2444
Country Austria
 

Data table header descriptions
ID Unambiguous identifier of a spot
Block Block# of spot on array
Row Row# of spot in block
Column Column# of spot in block
Provider_ID PICME ID for spotted cDNA
Name cDNA name in corresponding library from which cDNA originated
Status PCR status (OK, contaminated, unsuccessful, ...)
GB_ACC GenBank Accession#
Genus Genus of spotted cDNA
Species Species of spotted cDNA
Library Exact library name of spotted cDNA
Gel_Seq_Length Sequence Length determined from agarosis gel analysis
SEQUENCE Sequence from PICME-internal sequencing if available, NCBI Sequence otherwise
SPOT_ID

Data table
ID Block Row Column Provider_ID Name Status GB_ACC Genus Species Library Gel_Seq_Length SEQUENCE SPOT_ID
10101 1 1 1 [178101][43925] Cy3Oligo OK 557bp --Cy3Oligo
10102 1 1 2 [178101][43925] Cy3Oligo OK 557bp --Cy3Oligo
10103 1 1 3 [178097][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1606bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10104 1 1 4 [178097][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1606bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10105 1 1 5 [178093][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 772bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10106 1 1 6 [178093][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 772bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10107 1 1 7 [178125][43925] Cy3Oligo OK 564bp --Cy3Oligo
10108 1 1 8 [178125][43925] Cy3Oligo OK 564bp --Cy3Oligo
10109 1 1 9 [178121][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1621bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10110 1 1 10 [178121][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1621bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10111 1 1 11 [178117][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 780bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10112 1 1 12 [178117][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 780bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10113 1 1 13 [178149][43925] Cy3Oligo OK 566bp --Cy3Oligo
10114 1 1 14 [178149][43925] Cy3Oligo OK 566bp --Cy3Oligo
10115 1 1 15 [178145][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1633bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10116 1 1 16 [178145][43957] HTAU441 OK NM_005910.3 Homo Homo sapiens 1633bp ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
10117 1 1 17 [178141][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 795bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10118 1 1 18 [178141][43941] Hbeta-Sinuclein OK NM_001001502.1 Homo Homo sapiens 795bp TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
10119 1 1 19 [178173][43925] Cy3Oligo OK 567bp --Cy3Oligo
10120 1 1 20 [178173][43925] Cy3Oligo OK 567bp --Cy3Oligo

Total number of rows: 15488

Table truncated, full table size 10299 Kbytes.




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