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Status
Public on Dec 10, 2008
Title
2007-05-17_C_elegans_ChIP_03
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Caenorhabditis elegans
Manufacturer
Nimblegen Systems Inc
Manufacture protocol
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number
2007-05-17_C_elegans_ChIP_01
Support
glass
Coating
aminosilane
Description
Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Contributor(s)
Strome S , Lieb J
Submission date
Dec 05, 2008
Last update date
Dec 10, 2008
Contact name
Everett Zhou
E-mail(s)
xlzhou@email.unc.edu
Organization name
UNC
Street address
1000 Manning Dr.
City
Chapel Hill
State/province
NC
ZIP/Postal code
27599
Country
USA
Samples (7)
GSM403976 , GSM403979 , GSM403982 , GSM417018 , GSM562593 , GSM562596
Series (4)
GSE16133
Strome SGF3165_FLAG_MES4FLAG_EEMB
GSE16621
Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22700
Strome NA_MES4FLAG_EEMB
Data table header descriptions
ID
CHROMOSOME
Chromosome name or "random" for random control probes
RANGE_GB
SPOT_ID
RANGE_START
Start coordinate. wormbase ws170/ UCSC ce4
RANGE_END
Stop coordinate. wormbase ws170/ UCSC ce4
RANGE_STRAND
Positive or negative
PROBE_CLASS
Experimental or control
SEQUENCE
Probe sequence
GENOME RELEASE
The genome release coordinates correspond to.
Data table
ID
CHROMOSOME
RANGE_GB
SPOT_ID
RANGE_START
RANGE_END
RANGE_STRAND
PROBE_CLASS
SEQUENCE
GENOME RELEASE
VFS014973881
V
NC_003283.7
14973881
14973930
+
experimental
AGAACACAAATTACTAACAAGAATACATTTTCGAAGGTACAACAGGAATT
ws170/ce4
XFS011765153
X
NC_003284.6
11765153
11765202
+
experimental
GTACAAAGCGGGTTAAGTTTATGTGGTGTTCGCAAAAGGTTTTAACTGCT
ws170/ce4
VFS009758648
V
NC_003283.7
9758648
9758697
+
experimental
AGGGTTAAAGAGGGTGAGATAGACCATCTGCGACCCTTTTGTTCGAACAG
ws170/ce4
VFS006670543
V
NC_003283.7
6670543
6670592
+
experimental
GCATGTGTGGATCTTCTTGCATTGAGCCCACATTCTAGAGGTTGGAAGTT
ws170/ce4
XFS017107435
X
NC_003284.6
17107435
17107484
+
experimental
GGGACCACTTCTCCAGTTTGCTCATAAACCTCCGCACGAACTAGTATCCA
ws170/ce4
XFS016762741
X
NC_003284.6
16762741
16762790
+
experimental
GAGTGGGTACTCATTTGAAAATGATAATTACACAATTTTTTACTGTGCCA
ws170/ce4
XFS001359596
X
NC_003284.6
1359596
1359645
+
experimental
CAATGTTTATTTTATTTCAATCGGATTTAAATTGGTAGAAGGATACTTTA
ws170/ce4
VFS015510423
V
NC_003283.7
15510423
15510472
+
experimental
TTTTTAAATTTCCACAAAAAAAATTAGGTGGCCGAGTTTTCTCTATTCCA
ws170/ce4
XFS013752352
X
NC_003284.6
13752352
13752401
+
experimental
GCCTTCCCCATATGCCAGACTAGGGACTGTTCAATTCGTTGAGCAAGTAC
ws170/ce4
XFS016300174
X
NC_003284.6
16300174
16300223
+
experimental
CAAATAGTTATTTTAATACTTGAAGTTCGTTATGGATCACATTTTTTCCT
ws170/ce4
XFS015169380
X
NC_003284.6
15169380
15169429
+
experimental
ATCAAGCAATAGTTAATGAAGACTTGGAGATGGTGTATTTTTTATGCCGC
ws170/ce4
XFS000348096
X
NC_003284.6
348096
348145
+
experimental
AGTACCAAACAAAATTTTCCAAAAATATTACACAAATCGATGTTTGCAGA
ws170/ce4
VFS014877369
V
NC_003283.7
14877369
14877418
+
experimental
ATCTGCCAAAAAATTGGAGGAGAAAAGAGAAAGTGGTGGTCACTTTTCTT
ws170/ce4
VFS012285649
V
NC_003283.7
12285649
12285698
+
experimental
TGCATTGCGGCTGTCAAAAGTCCTTCGAAATTAAATACAGATCCGTCGAG
ws170/ce4
VFS020841919
V
NC_003283.7
20841919
20841968
+
experimental
ACCTATCAAGGCACGGAGTTCTACAATCGTGAAGTGAACTTCCACATCGG
ws170/ce4
XFS000209938
X
NC_003284.6
209938
209987
+
experimental
ATTTCCACGTTTTTGATTAAATTTAAACTGAAAATTTCAAAATTTCAGTC
ws170/ce4
VFS009079513
V
NC_003283.7
9079513
9079562
+
experimental
TATGTTTACTAAACAGTTTTAACGAAATAGTTCCTGGTTTCTTTTAATTA
ws170/ce4
XFS003913600
X
NC_003284.6
3913600
3913649
+
experimental
ATTATATACTTTACAAGCAATTCTCCGGTTTCTGGTGGATTTAAGTTAGG
ws170/ce4
XFS010193964
X
NC_003284.6
10193964
10194013
+
experimental
ATTATTCTTTCTCAGAATGAACTTTCGAACAAAGTTTAATATCTTGTTTT
ws170/ce4
VFS020158738
V
NC_003283.7
20158738
20158787
+
experimental
GAACAGAAGCAAGAGGAAGAGAAACAAAAGGAAGACAAGAAAACAGTTTT
ws170/ce4
Total number of rows: 657692 Table truncated, full table size 77750 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL7745_2007_05_17_C_elegans_ChIP_03.ndf.gz
31.2 Mb
(ftp) (http)
NDF
GPL7745_2007_05_17_C_elegans_ChIP_03.pos.gz
4.9 Mb
(ftp) (http)
POS