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Platform GPL7745 Query DataSets for GPL7745
Status Public on Dec 10, 2008
Title 2007-05-17_C_elegans_ChIP_03
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Caenorhabditis elegans
Manufacturer Nimblegen Systems Inc
Manufacture protocol Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
Catalog number 2007-05-17_C_elegans_ChIP_01
Support glass
Coating aminosilane
 
Description Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR,Cerrina F. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat Biotechnol. 1999 Oct;17(10):974-8. PMID: 10504697
 
Contributor(s) Strome S, Lieb J
Submission date Dec 05, 2008
Last update date Dec 10, 2008
Contact name Everett Zhou
E-mail(s) xlzhou@email.unc.edu
Organization name UNC
Street address 1000 Manning Dr.
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Samples (7) GSM403976, GSM403979, GSM403982, GSM417018, GSM562593, GSM562596 
Series (4)
GSE16133 Strome SGF3165_FLAG_MES4FLAG_EEMB
GSE16621 Analysis of SDC-2, DPY-26, MIX-1, DPY-27 and RNA Polymerase II ChIP-chip and RNA abundance in C. elegans
GSE22700 Strome NA_MES4FLAG_EEMB

Data table header descriptions
ID
CHROMOSOME Chromosome name or "random" for random control probes
RANGE_GB
SPOT_ID
RANGE_START Start coordinate. wormbase ws170/ UCSC ce4
RANGE_END Stop coordinate. wormbase ws170/ UCSC ce4
RANGE_STRAND Positive or negative
PROBE_CLASS Experimental or control
SEQUENCE Probe sequence
GENOME RELEASE The genome release coordinates correspond to.

Data table
ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START RANGE_END RANGE_STRAND PROBE_CLASS SEQUENCE GENOME RELEASE
VFS014973881 V NC_003283.7 14973881 14973930 + experimental AGAACACAAATTACTAACAAGAATACATTTTCGAAGGTACAACAGGAATT ws170/ce4
XFS011765153 X NC_003284.6 11765153 11765202 + experimental GTACAAAGCGGGTTAAGTTTATGTGGTGTTCGCAAAAGGTTTTAACTGCT ws170/ce4
VFS009758648 V NC_003283.7 9758648 9758697 + experimental AGGGTTAAAGAGGGTGAGATAGACCATCTGCGACCCTTTTGTTCGAACAG ws170/ce4
VFS006670543 V NC_003283.7 6670543 6670592 + experimental GCATGTGTGGATCTTCTTGCATTGAGCCCACATTCTAGAGGTTGGAAGTT ws170/ce4
XFS017107435 X NC_003284.6 17107435 17107484 + experimental GGGACCACTTCTCCAGTTTGCTCATAAACCTCCGCACGAACTAGTATCCA ws170/ce4
XFS016762741 X NC_003284.6 16762741 16762790 + experimental GAGTGGGTACTCATTTGAAAATGATAATTACACAATTTTTTACTGTGCCA ws170/ce4
XFS001359596 X NC_003284.6 1359596 1359645 + experimental CAATGTTTATTTTATTTCAATCGGATTTAAATTGGTAGAAGGATACTTTA ws170/ce4
VFS015510423 V NC_003283.7 15510423 15510472 + experimental TTTTTAAATTTCCACAAAAAAAATTAGGTGGCCGAGTTTTCTCTATTCCA ws170/ce4
XFS013752352 X NC_003284.6 13752352 13752401 + experimental GCCTTCCCCATATGCCAGACTAGGGACTGTTCAATTCGTTGAGCAAGTAC ws170/ce4
XFS016300174 X NC_003284.6 16300174 16300223 + experimental CAAATAGTTATTTTAATACTTGAAGTTCGTTATGGATCACATTTTTTCCT ws170/ce4
XFS015169380 X NC_003284.6 15169380 15169429 + experimental ATCAAGCAATAGTTAATGAAGACTTGGAGATGGTGTATTTTTTATGCCGC ws170/ce4
XFS000348096 X NC_003284.6 348096 348145 + experimental AGTACCAAACAAAATTTTCCAAAAATATTACACAAATCGATGTTTGCAGA ws170/ce4
VFS014877369 V NC_003283.7 14877369 14877418 + experimental ATCTGCCAAAAAATTGGAGGAGAAAAGAGAAAGTGGTGGTCACTTTTCTT ws170/ce4
VFS012285649 V NC_003283.7 12285649 12285698 + experimental TGCATTGCGGCTGTCAAAAGTCCTTCGAAATTAAATACAGATCCGTCGAG ws170/ce4
VFS020841919 V NC_003283.7 20841919 20841968 + experimental ACCTATCAAGGCACGGAGTTCTACAATCGTGAAGTGAACTTCCACATCGG ws170/ce4
XFS000209938 X NC_003284.6 209938 209987 + experimental ATTTCCACGTTTTTGATTAAATTTAAACTGAAAATTTCAAAATTTCAGTC ws170/ce4
VFS009079513 V NC_003283.7 9079513 9079562 + experimental TATGTTTACTAAACAGTTTTAACGAAATAGTTCCTGGTTTCTTTTAATTA ws170/ce4
XFS003913600 X NC_003284.6 3913600 3913649 + experimental ATTATATACTTTACAAGCAATTCTCCGGTTTCTGGTGGATTTAAGTTAGG ws170/ce4
XFS010193964 X NC_003284.6 10193964 10194013 + experimental ATTATTCTTTCTCAGAATGAACTTTCGAACAAAGTTTAATATCTTGTTTT ws170/ce4
VFS020158738 V NC_003283.7 20158738 20158787 + experimental GAACAGAAGCAAGAGGAAGAGAAACAAAAGGAAGACAAGAAAACAGTTTT ws170/ce4

Total number of rows: 657692

Table truncated, full table size 77750 Kbytes.




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Supplementary file Size Download File type/resource
GPL7745_2007_05_17_C_elegans_ChIP_03.ndf.gz 31.2 Mb (ftp)(http) NDF
GPL7745_2007_05_17_C_elegans_ChIP_03.pos.gz 4.9 Mb (ftp)(http) POS

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