|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Jul 10, 2009 |
Title |
SMD Print_1354 |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Homo sapiens |
Manufacturer |
Stanford Functional Genomics Facility, Stanford School of Medicine |
Manufacture protocol |
Material is transferred from microtiter plate wells to the slide surface by an automated print head
|
Support |
glass |
|
|
|
|
Submission date |
Dec 11, 2008 |
Last update date |
Jul 10, 2009 |
Contact name |
Jonathan Pollack |
E-mail(s) |
pollack1@stanford.edu
|
Phone |
650-736-1987
|
Organization name |
Stanford University
|
Department |
Pathology
|
Lab |
Pollack Lab
|
Street address |
269 Campus Drive, CCSR3245A
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5176 |
Country |
USA |
|
|
Samples (65)
|
GSM350554, GSM350555, GSM350556, GSM350557, GSM350558, GSM350559
GSM350560, GSM350561, GSM350562, GSM350563, GSM350564, GSM350565, GSM350566, GSM350567, GSM350568, GSM350569, GSM350570, GSM350571, GSM350572, GSM350573, GSM385599, GSM385601, GSM385602, GSM385603, GSM385604, GSM385606, GSM385607, GSM385608, GSM385610, GSM385611, GSM385612, GSM385613, GSM385614, GSM385616, GSM385618, GSM385622, GSM385623, GSM385624, GSM385625, GSM385626, GSM385627, GSM385631, GSM385633, GSM385634, GSM385635, GSM385636, GSM385637, GSM385638, GSM385639, GSM385641, GSM385642, GSM385643, GSM385644, GSM385645, GSM385646, GSM971842, GSM971843, GSM971844, GSM971845, GSM971846, GSM971847, GSM971848, GSM971849, GSM971850, GSM971851
|
Series (4)
|
GSE13915 |
Prognostic signature of epithelial-mesenchymal transition in breast cancer |
GSE15361 |
Molecular profiling of breast cancer cell lines defines relevant tumor models (gene expression) |
GSE15376 |
Molecular profiling of breast cancer cell lines defines relevant tumor models |
|
Data table header descriptions |
ID |
|
MetaColumn |
|
MetaRow |
|
Column |
|
Row |
|
X |
|
Y |
|
Reporter Name |
|
Reporter Species |
|
Reporter BioSequence [gcContent] |
|
Reporter BioSequence [length] |
|
Reporter BioSequence [meltingTemp] |
|
SEQUENCE |
|
Repoter Biosequence Type |
|
Repoter BioSequence PolymerType |
|
Reporter Group[role] |
|
Reporter ControlType |
|
CompositeSequence Name |
|
CompositeSequence BioSequence [ClusterId] |
|
CompositeSequence BioSequence [Gene Name] |
|
CompositeSequence BioSequence [Gene Symbol] |
|
CompositeSequence BioSequence [GeneId] |
|
GB_ACC |
GenBank Accession Number |
CompositeSequence Biosequence Type |
|
CompositeSequence BioSequence PolymerType |
|
Plate Identifier |
|
Plate Row |
|
Plate Column |
|
LUID |
|
Failed |
|
Contaminated |
|
Sequence Verified |
|
SPOT_ID |
|
Data table |
ID |
MetaColumn |
MetaRow |
Column |
Row |
X |
Y |
Reporter Name |
Reporter Species |
Reporter BioSequence [gcContent] |
Reporter BioSequence [length] |
Reporter BioSequence [meltingTemp] |
SEQUENCE |
Repoter Biosequence Type |
Repoter BioSequence PolymerType |
Reporter Group[role] |
Reporter ControlType |
CompositeSequence Name |
CompositeSequence BioSequence [ClusterId] |
CompositeSequence BioSequence [Gene Name] |
CompositeSequence BioSequence [Gene Symbol] |
CompositeSequence BioSequence [GeneId] |
GB_ACC |
CompositeSequence Biosequence Type |
CompositeSequence BioSequence PolymerType |
Plate Identifier |
Plate Row |
Plate Column |
LUID |
Failed |
Contaminated |
Sequence Verified |
SPOT_ID |
1 |
1 |
1 |
1 |
1 |
0 |
0 |
hSQ025392 |
Homo sapiens |
35.71 |
70 |
72 |
GATTGCACATTGTTGTTTTTTTAATAGTCATTCCAAATATGAGATGCATTGTTACAGGAAGTCCCTTGCC |
ss_oligo |
DNA |
Control |
control_positive |
60 |
Hs.520640 |
Actin, beta |
ACTB |
60 |
NM_001101 |
gene |
DNA |
HOP_1 |
D |
1 |
844129 |
0 |
U |
U |
|
31 |
1 |
1 |
1 |
2 |
0 |
0 |
hSQ042081 |
Homo sapiens |
52.86 |
70 |
79 |
TGTGACAGGGCAAAGCCCAACACCTTCCCCCACTGGATTGACTACAGCAAAGATGCCCAGTGTTCCACTT |
ss_oligo |
DNA |
Control |
control_tiling |
5788 |
Hs.654514 |
Protein tyrosine phosphatase, receptor type, C |
PTPRC |
5788 |
NM_002838 |
gene |
DNA |
HOP_4 |
P |
1 |
845569 |
0 |
U |
U |
|
61 |
1 |
1 |
1 |
3 |
0 |
0 |
hSQ022406 |
Homo sapiens |
34.29 |
70 |
72 |
GAAACTTTTCCTACATATTAGGCGTTAGTATGAGGACATTTGTTTGAATTATAGAAATTTGCCCTGAGCT |
ss_oligo |
DNA |
Experimental |
|
57669 |
Hs.654802 |
Erythrocyte membrane protein band 4.1 like 5 |
EPB41L5 |
57669 |
|
gene |
DNA |
HOP_8 |
L |
1 |
847009 |
0 |
U |
U |
Erythrocyte membrane protein band 4.1 like 5 |
91 |
1 |
1 |
1 |
4 |
0 |
0 |
hSQ045428 |
Homo sapiens |
37.14 |
70 |
73 |
TTTTGCACAACTGAGAATCCTGCGGCTTGGTTTAATGAGTGTGTTCATGAAATAAATAATGGAGGAATTG |
ss_oligo |
DNA |
Experimental |
|
79054 |
Hs.366053 |
Transient receptor potential cation channel, subfamily M, member 8 |
TRPM8 |
79054 |
NM_024080 |
gene |
DNA |
HOP_12 |
H |
1 |
848449 |
0 |
U |
U |
|
121 |
1 |
1 |
1 |
5 |
0 |
0 |
hSQ044020 |
Homo sapiens |
28.57 |
70 |
69 |
TTGAGAAGACTAAGTTGTAGCATATATGAGCTTCAAATATAAATGGATTTCAGTTAATAAAGCTGTTCTT |
ss_oligo |
DNA |
Experimental |
|
129881 |
Hs.632550 |
chromosome 2 open reading frame 77 |
LOC129881 |
129881 |
BC015980 |
gene |
DNA |
HOP_16 |
D |
1 |
849889 |
0 |
U |
U |
|
151 |
1 |
1 |
1 |
6 |
0 |
0 |
hSQ042554 |
Homo sapiens |
35.71 |
70 |
72 |
TTAAAACTGTGGACTTAAATGTTCTGCAAAGTCTTACACAAAAGCCCAATACAGTACATGAACTACGGAA |
ss_oligo |
DNA |
Experimental |
|
64770 |
Hs.656256 |
coiled-coil domain containing 14 |
CCDC14 |
64770 |
|
gene |
DNA |
HOP_19 |
P |
1 |
851329 |
0 |
U |
U |
coiled-coil domain containing 14 |
181 |
1 |
1 |
1 |
7 |
0 |
0 |
hSQ023888 |
Homo sapiens |
24.29 |
70 |
68 |
GAGAAAACAAATACTGAAAGTCTCTACTTACATCCAAATTTTAAAAAATAAAATCTGTAGATTAACAATC |
ss_oligo |
DNA |
Experimental |
|
4591 |
Hs.579079 |
tripartite motif-containing 37 |
TRIM37 |
4591 |
|
gene |
DNA |
HOP_23 |
L |
1 |
852769 |
0 |
U |
U |
tripartite motif-containing 37 |
211 |
1 |
1 |
1 |
8 |
0 |
0 |
hSQ001789 |
Homo sapiens |
41.43 |
70 |
75 |
AAGACATACCTGTCAGCCATCACTATTATGACAACAAGCTACCTAAACATGGTTTCCATCAGATGCCCAA |
ss_oligo |
DNA |
Experimental |
|
338596 |
Hs.677766 |
Hypothetical protein LOC100128098 |
ST8SIA6 |
338596 |
AJ621583 |
gene |
DNA |
HOP_27 |
H |
1 |
854209 |
0 |
U |
U |
|
241 |
1 |
1 |
1 |
9 |
0 |
0 |
hSQ039722 |
Homo sapiens |
41.43 |
70 |
75 |
TGAGTCTAGTGCCCCTATTATTAACAATTCCCCCAGAACATGGAAATAACCATTGTTTACAGAGCTGAGC |
ss_oligo |
DNA |
Experimental |
|
2913 |
Hs.590575 |
Glutamate receptor, metabotropic 3 |
GRM3 |
2913 |
|
gene |
DNA |
HOP_31 |
D |
1 |
855649 |
0 |
U |
U |
Glutamate receptor, metabotropic 3 |
271 |
1 |
1 |
1 |
10 |
0 |
0 |
hSQ015767 |
Homo sapiens |
47.14 |
70 |
77 |
CCCATGAAATTAGGCGCCTTGTTTGAGCTGCGTTTCACACTTCTTTAGAGCTAGCTGACCTTTGGCCAAA |
ss_oligo |
DNA |
Experimental |
|
3026 |
Hs.422542 |
hyaluronan binding protein 2 |
HABP2 |
3026 |
|
gene |
DNA |
HOP_34 |
P |
1 |
857089 |
0 |
U |
U |
hyaluronan binding protein 2 |
301 |
1 |
1 |
1 |
11 |
0 |
0 |
hSQ023799 |
Homo sapiens |
41.43 |
70 |
75 |
GACTGCTTGATTCAGGCTGTTCAAGGTGAAGGATTCATGAGTCTATATAAAGGCTTTTTACCATCTTGGC |
ss_oligo |
DNA |
Experimental |
|
9481 |
Hs.40510 |
solute carrier family 25, member 27 |
SLC25A27 |
9481 |
|
gene |
DNA |
HOP_38 |
L |
1 |
858529 |
0 |
U |
U |
solute carrier family 25, member 27 |
331 |
1 |
1 |
1 |
12 |
0 |
0 |
hSQ027876 |
Homo sapiens |
47.14 |
70 |
77 |
GCTCTCTGAGAAGAGACAGCAAAGCTTCTTAGATGGATCGAAAGACCACGAGCTGGGATACCAAGTTCTA |
ss_oligo |
DNA |
Experimental |
|
51108 |
Hs.279583 |
methyltransferase like 9 |
METTL9 |
51108 |
|
gene |
DNA |
HOP_42 |
H |
1 |
859969 |
0 |
U |
U |
methyltransferase like 9 |
361 |
1 |
1 |
1 |
13 |
0 |
0 |
hSQ006142 |
Homo sapiens |
50.00 |
70 |
78 |
AGAGGGTTCGTTTGCTTTCAAAATCCATCTCCCCGTTCCTCTCAGGGTTCTTTGCCCCAAAGGACTTTGC |
ss_oligo |
DNA |
Experimental |
|
440596 |
|
LOC440596 |
LOC440596 |
440596 |
XM_498746 |
gene |
DNA |
HOP_46 |
D |
1 |
861409 |
0 |
U |
U |
|
391 |
1 |
1 |
1 |
14 |
0 |
0 |
hSQ019262 |
Homo sapiens |
48.57 |
70 |
78 |
CTATACTATCCAGACGTATGTCTTCCCTGTCACTACTTGCTTGGCACACAGCAATAGCTGCCTCAACCCT |
ss_oligo |
DNA |
Experimental |
|
339403 |
Hs.449914 |
relaxin 3 receptor 2 |
RLN3R2 |
339403 |
|
gene |
DNA |
HOP_49 |
P |
1 |
862849 |
0 |
U |
U |
relaxin 3 receptor 2 |
421 |
1 |
1 |
1 |
15 |
0 |
0 |
hSQ011551 |
Homo sapiens |
44.29 |
70 |
76 |
CAAGAAAAGCCGGCACCAAGAACTTCCATTCTAATCTAGAGCTGACCAGTTTGAGCTGATTCTCTCTTTG |
ss_oligo |
DNA |
Experimental |
|
6307 |
Hs.105269 |
Sterol-C4-methyl oxidase-like |
SC4MOL |
6307 |
|
gene |
DNA |
HOP_53 |
L |
1 |
864289 |
0 |
U |
U |
Sterol-C4-methyl oxidase-like |
451 |
1 |
1 |
1 |
16 |
0 |
0 |
hSQ016259 |
Homo sapiens |
38.57 |
70 |
74 |
CCCTCTTTTCTCATTCCTCCAACTTCCTCCCCTCCTTCAATTATTTTTTTGTAAAGTTGATGCCTTACTT |
ss_oligo |
DNA |
Experimental |
|
23428 |
Hs.632348 |
Solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 |
SLC7A8 |
23428 |
|
gene |
DNA |
HOP_57 |
H |
1 |
865729 |
0 |
U |
U |
Solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 |
481 |
1 |
1 |
1 |
17 |
0 |
0 |
hSQ043339 |
Homo sapiens |
44.29 |
70 |
76 |
TTCCAATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAAGG |
ss_oligo |
DNA |
Experimental |
|
65981 |
Hs.234355 |
caprin family member 2 |
CAPRIN2 |
65981 |
|
gene |
DNA |
HOP_61 |
D |
1 |
867169 |
0 |
U |
U |
caprin family member 2 |
511 |
1 |
1 |
1 |
18 |
0 |
0 |
hSQ034167 |
Homo sapiens |
67.14 |
70 |
85 |
GTTCTACAGCTATGGCCGGGCCAGCTGCAGCTTTCCGCCGCTTGGGCGCCTTGTCCGGAGCTGCGGCCTT |
ss_oligo |
DNA |
Experimental |
|
254863 |
Hs.534591 |
Chromosome 17 open reading frame 61 |
C17orf61 |
254863 |
|
gene |
DNA |
HOP_64 |
P |
1 |
868609 |
0 |
U |
U |
Chromosome 17 open reading frame 61 |
541 |
1 |
1 |
1 |
19 |
0 |
0 |
hSQ012282 |
Homo sapiens |
70.00 |
70 |
86 |
CACCCTGCCCAGCTCAGGGATTGGCGGGCGATGTTACCCCCTCAGGGATTGGCGGGCGGAAGTCCCGCCC |
ss_oligo |
DNA |
Experimental |
|
23218 |
Hs.437043 |
Neurobeachin-like 2 |
NBEAL2 |
23218 |
|
gene |
DNA |
HOP_68 |
L |
1 |
870049 |
0 |
U |
U |
Neurobeachin-like 2 |
571 |
1 |
1 |
1 |
20 |
0 |
0 |
hSQ026304 |
Homo sapiens |
35.71 |
70 |
72 |
GCATGTAGATGGTTGTGCAATATTTTTCAAAAGAGAAAAATTTACATTGGTGCAGAAGCATGCAGTGGAA |
ss_oligo |
DNA |
Experimental |
|
440280 |
Hs.531161 |
similar to CCR4-NOT transcription complex, subunit 6-like isoform 1 |
LOC440280 |
440280 |
XM_496071 |
gene |
DNA |
HOP_72 |
H |
1 |
871489 |
0 |
U |
U |
|
Total number of rows: 49152
Table truncated, full table size 13175 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL7785.adf.gz |
4.6 Mb |
(ftp)(http) |
ADF |
|
|
|
|
|