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Platform GPL7785 Query DataSets for GPL7785
Status Public on Jul 10, 2009
Title SMD Print_1354
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Stanford Functional Genomics Facility, Stanford School of Medicine
Manufacture protocol Material is transferred from microtiter plate wells to the slide surface by an automated print head
Support glass
 
 
Submission date Dec 11, 2008
Last update date Jul 10, 2009
Contact name Jonathan Pollack
E-mail(s) pollack1@stanford.edu
Phone 650-736-1987
Organization name Stanford University
Department Pathology
Lab Pollack Lab
Street address 269 Campus Drive, CCSR3245A
City Stanford
State/province CA
ZIP/Postal code 94305-5176
Country USA
 
Samples (65) GSM350554, GSM350555, GSM350556, GSM350557, GSM350558, GSM350559 
Series (4)
GSE13915 Prognostic signature of epithelial-mesenchymal transition in breast cancer
GSE15361 Molecular profiling of breast cancer cell lines defines relevant tumor models (gene expression)
GSE15376 Molecular profiling of breast cancer cell lines defines relevant tumor models

Data table header descriptions
ID
MetaColumn
MetaRow
Column
Row
X
Y
Reporter Name
Reporter Species
Reporter BioSequence [gcContent]
Reporter BioSequence [length]
Reporter BioSequence [meltingTemp]
SEQUENCE
Repoter Biosequence Type
Repoter BioSequence PolymerType
Reporter Group[role]
Reporter ControlType
CompositeSequence Name
CompositeSequence BioSequence [ClusterId]
CompositeSequence BioSequence [Gene Name]
CompositeSequence BioSequence [Gene Symbol]
CompositeSequence BioSequence [GeneId]
GB_ACC GenBank Accession Number
CompositeSequence Biosequence Type
CompositeSequence BioSequence PolymerType
Plate Identifier
Plate Row
Plate Column
LUID
Failed
Contaminated
Sequence Verified
SPOT_ID

Data table
ID MetaColumn MetaRow Column Row X Y Reporter Name Reporter Species Reporter BioSequence [gcContent] Reporter BioSequence [length] Reporter BioSequence [meltingTemp] SEQUENCE Repoter Biosequence Type Repoter BioSequence PolymerType Reporter Group[role] Reporter ControlType CompositeSequence Name CompositeSequence BioSequence [ClusterId] CompositeSequence BioSequence [Gene Name] CompositeSequence BioSequence [Gene Symbol] CompositeSequence BioSequence [GeneId] GB_ACC CompositeSequence Biosequence Type CompositeSequence BioSequence PolymerType Plate Identifier Plate Row Plate Column LUID Failed Contaminated Sequence Verified SPOT_ID
1 1 1 1 1 0 0 hSQ025392 Homo sapiens 35.71 70 72 GATTGCACATTGTTGTTTTTTTAATAGTCATTCCAAATATGAGATGCATTGTTACAGGAAGTCCCTTGCC ss_oligo DNA Control control_positive 60 Hs.520640 Actin, beta ACTB 60 NM_001101 gene DNA HOP_1 D 1 844129 0 U U
31 1 1 1 2 0 0 hSQ042081 Homo sapiens 52.86 70 79 TGTGACAGGGCAAAGCCCAACACCTTCCCCCACTGGATTGACTACAGCAAAGATGCCCAGTGTTCCACTT ss_oligo DNA Control control_tiling 5788 Hs.654514 Protein tyrosine phosphatase, receptor type, C PTPRC 5788 NM_002838 gene DNA HOP_4 P 1 845569 0 U U
61 1 1 1 3 0 0 hSQ022406 Homo sapiens 34.29 70 72 GAAACTTTTCCTACATATTAGGCGTTAGTATGAGGACATTTGTTTGAATTATAGAAATTTGCCCTGAGCT ss_oligo DNA Experimental 57669 Hs.654802 Erythrocyte membrane protein band 4.1 like 5 EPB41L5 57669 gene DNA HOP_8 L 1 847009 0 U U Erythrocyte membrane protein band 4.1 like 5
91 1 1 1 4 0 0 hSQ045428 Homo sapiens 37.14 70 73 TTTTGCACAACTGAGAATCCTGCGGCTTGGTTTAATGAGTGTGTTCATGAAATAAATAATGGAGGAATTG ss_oligo DNA Experimental 79054 Hs.366053 Transient receptor potential cation channel, subfamily M, member 8 TRPM8 79054 NM_024080 gene DNA HOP_12 H 1 848449 0 U U
121 1 1 1 5 0 0 hSQ044020 Homo sapiens 28.57 70 69 TTGAGAAGACTAAGTTGTAGCATATATGAGCTTCAAATATAAATGGATTTCAGTTAATAAAGCTGTTCTT ss_oligo DNA Experimental 129881 Hs.632550 chromosome 2 open reading frame 77 LOC129881 129881 BC015980 gene DNA HOP_16 D 1 849889 0 U U
151 1 1 1 6 0 0 hSQ042554 Homo sapiens 35.71 70 72 TTAAAACTGTGGACTTAAATGTTCTGCAAAGTCTTACACAAAAGCCCAATACAGTACATGAACTACGGAA ss_oligo DNA Experimental 64770 Hs.656256 coiled-coil domain containing 14 CCDC14 64770 gene DNA HOP_19 P 1 851329 0 U U coiled-coil domain containing 14
181 1 1 1 7 0 0 hSQ023888 Homo sapiens 24.29 70 68 GAGAAAACAAATACTGAAAGTCTCTACTTACATCCAAATTTTAAAAAATAAAATCTGTAGATTAACAATC ss_oligo DNA Experimental 4591 Hs.579079 tripartite motif-containing 37 TRIM37 4591 gene DNA HOP_23 L 1 852769 0 U U tripartite motif-containing 37
211 1 1 1 8 0 0 hSQ001789 Homo sapiens 41.43 70 75 AAGACATACCTGTCAGCCATCACTATTATGACAACAAGCTACCTAAACATGGTTTCCATCAGATGCCCAA ss_oligo DNA Experimental 338596 Hs.677766 Hypothetical protein LOC100128098 ST8SIA6 338596 AJ621583 gene DNA HOP_27 H 1 854209 0 U U
241 1 1 1 9 0 0 hSQ039722 Homo sapiens 41.43 70 75 TGAGTCTAGTGCCCCTATTATTAACAATTCCCCCAGAACATGGAAATAACCATTGTTTACAGAGCTGAGC ss_oligo DNA Experimental 2913 Hs.590575 Glutamate receptor, metabotropic 3 GRM3 2913 gene DNA HOP_31 D 1 855649 0 U U Glutamate receptor, metabotropic 3
271 1 1 1 10 0 0 hSQ015767 Homo sapiens 47.14 70 77 CCCATGAAATTAGGCGCCTTGTTTGAGCTGCGTTTCACACTTCTTTAGAGCTAGCTGACCTTTGGCCAAA ss_oligo DNA Experimental 3026 Hs.422542 hyaluronan binding protein 2 HABP2 3026 gene DNA HOP_34 P 1 857089 0 U U hyaluronan binding protein 2
301 1 1 1 11 0 0 hSQ023799 Homo sapiens 41.43 70 75 GACTGCTTGATTCAGGCTGTTCAAGGTGAAGGATTCATGAGTCTATATAAAGGCTTTTTACCATCTTGGC ss_oligo DNA Experimental 9481 Hs.40510 solute carrier family 25, member 27 SLC25A27 9481 gene DNA HOP_38 L 1 858529 0 U U solute carrier family 25, member 27
331 1 1 1 12 0 0 hSQ027876 Homo sapiens 47.14 70 77 GCTCTCTGAGAAGAGACAGCAAAGCTTCTTAGATGGATCGAAAGACCACGAGCTGGGATACCAAGTTCTA ss_oligo DNA Experimental 51108 Hs.279583 methyltransferase like 9 METTL9 51108 gene DNA HOP_42 H 1 859969 0 U U methyltransferase like 9
361 1 1 1 13 0 0 hSQ006142 Homo sapiens 50.00 70 78 AGAGGGTTCGTTTGCTTTCAAAATCCATCTCCCCGTTCCTCTCAGGGTTCTTTGCCCCAAAGGACTTTGC ss_oligo DNA Experimental 440596 LOC440596 LOC440596 440596 XM_498746 gene DNA HOP_46 D 1 861409 0 U U
391 1 1 1 14 0 0 hSQ019262 Homo sapiens 48.57 70 78 CTATACTATCCAGACGTATGTCTTCCCTGTCACTACTTGCTTGGCACACAGCAATAGCTGCCTCAACCCT ss_oligo DNA Experimental 339403 Hs.449914 relaxin 3 receptor 2 RLN3R2 339403 gene DNA HOP_49 P 1 862849 0 U U relaxin 3 receptor 2
421 1 1 1 15 0 0 hSQ011551 Homo sapiens 44.29 70 76 CAAGAAAAGCCGGCACCAAGAACTTCCATTCTAATCTAGAGCTGACCAGTTTGAGCTGATTCTCTCTTTG ss_oligo DNA Experimental 6307 Hs.105269 Sterol-C4-methyl oxidase-like SC4MOL 6307 gene DNA HOP_53 L 1 864289 0 U U Sterol-C4-methyl oxidase-like
451 1 1 1 16 0 0 hSQ016259 Homo sapiens 38.57 70 74 CCCTCTTTTCTCATTCCTCCAACTTCCTCCCCTCCTTCAATTATTTTTTTGTAAAGTTGATGCCTTACTT ss_oligo DNA Experimental 23428 Hs.632348 Solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 SLC7A8 23428 gene DNA HOP_57 H 1 865729 0 U U Solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
481 1 1 1 17 0 0 hSQ043339 Homo sapiens 44.29 70 76 TTCCAATGGAAATTATAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAAGG ss_oligo DNA Experimental 65981 Hs.234355 caprin family member 2 CAPRIN2 65981 gene DNA HOP_61 D 1 867169 0 U U caprin family member 2
511 1 1 1 18 0 0 hSQ034167 Homo sapiens 67.14 70 85 GTTCTACAGCTATGGCCGGGCCAGCTGCAGCTTTCCGCCGCTTGGGCGCCTTGTCCGGAGCTGCGGCCTT ss_oligo DNA Experimental 254863 Hs.534591 Chromosome 17 open reading frame 61 C17orf61 254863 gene DNA HOP_64 P 1 868609 0 U U Chromosome 17 open reading frame 61
541 1 1 1 19 0 0 hSQ012282 Homo sapiens 70.00 70 86 CACCCTGCCCAGCTCAGGGATTGGCGGGCGATGTTACCCCCTCAGGGATTGGCGGGCGGAAGTCCCGCCC ss_oligo DNA Experimental 23218 Hs.437043 Neurobeachin-like 2 NBEAL2 23218 gene DNA HOP_68 L 1 870049 0 U U Neurobeachin-like 2
571 1 1 1 20 0 0 hSQ026304 Homo sapiens 35.71 70 72 GCATGTAGATGGTTGTGCAATATTTTTCAAAAGAGAAAAATTTACATTGGTGCAGAAGCATGCAGTGGAA ss_oligo DNA Experimental 440280 Hs.531161 similar to CCR4-NOT transcription complex, subunit 6-like isoform 1 LOC440280 440280 XM_496071 gene DNA HOP_72 H 1 871489 0 U U

Total number of rows: 49152

Table truncated, full table size 13175 Kbytes.




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Supplementary file Size Download File type/resource
GPL7785.adf.gz 4.6 Mb (ftp)(http) ADF

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