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Platform GPL7824 Query DataSets for GPL7824
Status Public on Jun 30, 2009
Title BTI_Tomato_12800_v.CGEP
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Solanum lycopersicum
Manufacturer Center for Gene Expression Profiling (CGEP) at Boyce Thompson Institute of Plant Research
Manufacture protocol TOM2 array were available from the Center for Gene Expression Profiling (CGEP) at Boyce Thompson Institute for Plant Research. TOM2 oligo array from tomato contain a total of 12800 elements or approximately 11860 unique elements. Sixty-nine oligonucleotides sequences from unigenes were synthesized by Operon (Operon biotechnologies, Hunstville, AL). Oligos were re-suspended in 12 uL of spotting buffer (3X SSC), and were spotted on Ultra Gaps Coated Slides (Corning, Lowell, MA) using a MicroGrid Pro arrayer (BioRobotics Inc., MA) with 32 MicroSpot2500 printing pins. Temperature and humidity inside the arrayer were maintained at 18-21°C and 35-45% RH, respectively. Oligos were fixed to the slide by 2-h incubation at 80°C.
Support glass
Coating aminosilane
 
Description The array consist of 32 subgrids (4 meta-rows, 8 meta-columns). Each sub-grid contains 20 rows and 20 columns
 
Web link http://ted.bti.cornell.edu/cgi-bin/TFGD/array/home.cgi
Contributor(s) Dubuc J
Submission date Dec 17, 2008
Last update date Jun 30, 2009
Contact name Jean-François Dubuc
E-mail(s) jean-francois.dubuc.1@ulaval.ca
Organization name Université Laval
Street address 2440 boul. Hochelaga
City Québec
ZIP/Postal code G1K 7P4
Country Canada
 
Samples (6) GSM352206, GSM352211, GSM352213, GSM352216, GSM352217, GSM352225
Series (1)
GSE14061 Impact of sucrose retrieval upon ex vitro acclimatization

Data table header descriptions
ID
ALT_ID Operon identifier
ACC Sol Genomic Network unigene accession
GB_ACC GenBank Accession number
oligo start Oligo start position (unigene)
oligo end Oligo end position (unigene)
Probe ID (Oligo_seq) Probe identifier and link to oligo sequence
Annotation Unigene annotation
SPOT_ID

Data table
ID ALT_ID ACC GB_ACC oligo start oligo end Probe ID (Oligo_seq) Annotation SPOT_ID
1 EMPTY EMPTY
2 EMPTY EMPTY
3 EMPTY EMPTY
4 EMPTY EMPTY
5 EMPTY EMPTY
6 EMPTY EMPTY
7 EMPTY EMPTY
8 EMPTY EMPTY
9 EMPTY EMPTY
10 EMPTY EMPTY
11 EMPTY EMPTY
12 EMPTY EMPTY
13 EMPTY EMPTY
14 EMPTY EMPTY
15 EMPTY EMPTY
16 EMPTY EMPTY
17 EMPTY EMPTY
18 EMPTY EMPTY
19 EMPTY EMPTY
20 EMPTY EMPTY

Total number of rows: 12800

Table truncated, full table size 11550 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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