GEO help: Mouse over screen elements for information.
Status
Public on Dec 01, 2009
Title
GrapeArray 1.2 developed by the Italian-French Public Consortium for Grapevine Genome Characterization
Technology type
in situ oligonucleotide
Distribution
non-commercial
Organism
Vitis vinifera Manufacturer
University of Verona - Scientific and Technological Department - Plant Functional Genomics Centre
Manufacture protocol
Probes are directly synthesized on a 12k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used.
Support
silicon
Coating
unknown
Description
Spots size: 25 microns
Contributor(s)
Bellin D , Ferrarini A , Chimento A , Delledonne M Submission date
Jan 04, 2009
Last update date
Dec 01, 2009
Contact name
Alberto Ferrarini
E-mail(s)
alberto.ferrarini@univr.it Phone
+39-045-802-7058
Organization name
University of Verona
Department
Scientific and Technological Department
Lab
Plant Functional Genomics Centre
Street address
Strada le Grazie, 15
City
Verona
State/province
Veneto
ZIP/Postal code
37134
Country
Italy
Samples (88)
GSM357140 , GSM461579 , GSM461582 , GSM461807 , GSM461824 , GSM461825
GSM461826 ,
GSM461827 ,
GSM461828 ,
GSM461829 ,
GSM461830 ,
GSM461831 ,
GSM461832 ,
GSM461833 ,
GSM461834 ,
GSM461835 ,
GSM461836 ,
GSM461837 ,
GSM461838 ,
GSM461839 ,
GSM461840 ,
GSM461841 ,
GSM462151 ,
GSM462152 ,
GSM462153 ,
GSM462154 ,
GSM462156 ,
GSM462157 ,
GSM462158 ,
GSM462160 ,
GSM462162 ,
GSM462164 ,
GSM462166 ,
GSM462168 ,
GSM462194 ,
GSM462195 ,
GSM462196 ,
GSM462197 ,
GSM462198 ,
GSM462199 ,
GSM462200 ,
GSM462201 ,
GSM462202 ,
GSM462203 ,
GSM462204 ,
GSM462205 ,
GSM462206 ,
GSM462210 ,
GSM462211 ,
GSM515297 ,
GSM515304 ,
GSM515305 ,
GSM515306 ,
GSM515307 ,
GSM515308 ,
GSM515309 ,
GSM515310 ,
GSM515311 ,
GSM515312 ,
GSM515313 ,
GSM515314 ,
GSM515315 ,
GSM515316 ,
GSM515317 ,
GSM515318 ,
GSM515319 ,
GSM515320 ,
GSM515344 ,
GSM515345 ,
GSM515346 ,
GSM1054146 ,
GSM1054147 ,
GSM1054148 ,
GSM1054149 ,
GSM1054150 ,
GSM1054151 ,
GSM1054152 ,
GSM1054153 ,
GSM1054154 ,
GSM1054155 ,
GSM1054156 ,
GSM1054157 ,
GSM1054158 ,
GSM1054159 ,
GSM1054160 ,
GSM1054161 ,
GSM1054162 ,
GSM1054163 Series (4)
GSE14276 Generation of transcriptome catalogs for global analysis of gene expression in non-model organisms
GSE18596 RNAs expression profiling in a resistant and a susceptible grapevine cultivar to Plasmopara viticola
GSE20511 Expression profiling in grapevine berry during development and withering processes
GSE42972 The sulfated laminarin triggers a stress transcriptome before priming the SA- and ROSdependent defenses during grapevine's induced resistance against Plasmopara viticola
Data table header descriptions ID SEQUENCE Oligo Sequence
SPOT_ID Identified VvGI 5.0 IDs, CDS predictions based on 8.4X assembly of Vitis vinifera genome and control spots
GB_ACC GenBank Accession Number
Data table ID SEQUENCE SPOT_ID GB_ACC BQ792095_273_S
ctagagagaattagtaagcgccccgaagagctgca
VvGI5.0_BQ792095
BQ792095 BQ792129_304_S
tcgggtgaggcattctttgtatactgccggtgtac
VvGI5.0_BQ792129
BQ792129 BQ792138_243_S
caggagctttgatcaggatgtcctcattaaccctg
VvGI5.0_BQ792138
BQ792138 BQ792147_52_S
attcaccactcagcatcagttcttttactgttgattgttg
VvGI5.0_BQ792147
BQ792147 BQ792152_344_S
tgggtgttttaacagtcatacgtgccatgctgtac
VvGI5.0_BQ792152
BQ792152 BQ792175_277_S
tggatgtcataccatgctgttgagggttcaggtaa
VvGI5.0_BQ792175
BQ792175 BQ792259_649_S
acggtattgattgcctggccaatcagcgtcgtatt
VvGI5.0_BQ792259
BQ792259 BQ792264_584_S
tgggcggagaaaactgtgaattattgtattgagaaga
VvGI5.0_BQ792264
BQ792264 BQ792271_644_S
aaaagtagccactctagttacacgccgctaaccaatc
VvGI5.0_BQ792271
BQ792271 BQ792277_552_S
ccttttcaactggggtctcaagctgttggtaattcagc
VvGI5.0_BQ792277
BQ792277 BQ792338_752_S
acactcaattctgcagagcaggaacctttcaattc
VvGI5.0_BQ792338
BQ792338 BQ792340_216_S
ctcctctctgcatgtttgaatgggtgaaaagaaattt
VvGI5.0_BQ792340
BQ792340 BQ792367_288_S
agctccatcaataatccccagataggacataaaattgtga
VvGI5.0_BQ792367
BQ792367 BQ792408_130_S
tcctactggccgggtaaaagaagtttggttgaata
VvGI5.0_BQ792408
BQ792408 BQ792412_696_S
atgctgcttatagtgattctggctctgacaaagct
VvGI5.0_BQ792412
BQ792412 BQ792443_133_S
attatggctcttgcacttccgttaggacagaccgc
VvGI5.0_BQ792443
BQ792443 BQ792482_737_S
tattcatcgaatcggacctagcagagacagggact
VvGI5.0_BQ792482
BQ792482 BQ792488_349_S
cctcattggtcctgattgaaatgaatggttaggacata
VvGI5.0_BQ792488
BQ792488 BQ792504_372_S
agctgttcctacccagccaatcaagactcaggatg
VvGI5.0_BQ792504
BQ792504 BQ792506_385_S
catggcgccctatttaattgggatcgagttgagcg
VvGI5.0_BQ792506
BQ792506
24676 1766 Kbytes .Supplementary data files not provided
Less...
More...