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Platform GPL8190 Query DataSets for GPL8190
Status Public on Feb 27, 2009
Title Affymetrix GeneChip N. gonorrhoeae Genome Array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Neisseria gonorrhoeae
Manufacturer Affymetrix
Manufacture protocol see manufacturer's website
 
Description This is a custom Affymetrix GeneChip (MPAUT1a520274F) for studying global transcriptional changes in Neisseria gonorrhoeae. The N. gonorrhoeae probe sets are specific to the FA1090 Oklahoma sequence strain. This array contains probes for 1744 N. gonorrhoeae open reading frames. The MPAUT1a520274F GeneChip also contains probe sets for other organisms, including Neisseria meningitidis and Haemophilus influenza.
 
Web link http://www.affymetrix.com/index.affx
Contributor(s) Dyer DW, Belland RJ, Munson RS, Apicella MA
Submission date Feb 12, 2009
Last update date Feb 27, 2009
Contact name Megan L. Falsetta
E-mail(s) megan-falsetta@uiowa.edu
Phone 319-353-5654
Organization name University of Iowa
Department Microbiology
Lab Michael A. Apicella, M.D.
Street address 51 Newton Road
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Samples (4) GSM371003, GSM371004, GSM371005, GSM371006
Series (1)
GSE14815 Transcriptional Profiling of Neisseria gonorrhoeae biofilm

Data table header descriptions
ID
ORF Gene Accession ID from the Kyoto Encyclopedia of Genes and Genomes database available at http://www.kegg.com
GI NCBI GI
ORF NCBI Gene ID
GENE_DESCRIPTION Description of gene function provided by KEGG database

Data table
ID ORF GI ORF GENE_DESCRIPTION
NGO0001_at NGO0001 59800474 3283049 putative chromosomal replication protein (DnaA)
NGO0002_at NGO0002 59800475 3283050 putative DNA polymerase III, beta subunit (DnaN)
NGO0003c_at NGO0003 59800476 3283051 putative polyphosphate kinase (PPK)
NGO0004c_at NGO0004 59800477 3283052 conserved hypothetical protein
NGO0006_at NGO0006 59800478 3283053 putative leucyl-tRNA synthetase
NGO0007_at NGO0007 59800479 3283054 putative type II restriction endonuclease
NGO0008_at NGO0008 59800480 3283055 putative modification methylase
NGO0009_at NGO0009 59800481 3283056 hypothetical protein
NGO0011c_at NGO0011 59800483 3283058 conserved hypothetical protein
NGO0015_at NGO0015 59800484 3283059 hypothetical protein
NGO0016c_at NGO0016 59800485 3283060 putative protein-export protein (SecG)
NGO0018_at NGO0018 59800487 3283062 conserved hypothetical protein
NGO0019_at NGO0019 59800488 3283075 putative protein-L-isoaspartate O-methyltransferase (PimT)
NGO0020_at NGO0020 59800489 3283063 conserved hypothetical protein
NGO0021c_at NGO0021 59800490 3283064 putative TonB-dependent receptor protein, iron related
NGO0022c_at NGO0022 59800491 3283065 conserved hypothetical protein
NGO0023c_at NGO0023 59800492 3283066 putative ABC transporter, periplasmic binding protein,iron related
NGO0024c_at NGO0023 59800493 3283067 hypothetical protein
NGO0025_at NGO0025 59800494 3283069 putative AraC-family transcriptional regulator
NGO0026c_at NGO0026 59800495 3283068 putative prolyl endopeptidase

Total number of rows: 1744

Table truncated, full table size 128 Kbytes.




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Supplementary data files not provided
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