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Platform GPL8281 Query DataSets for GPL8281
Status Public on May 22, 2009
Title CCF Human ISG v.1.3.1
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Bryan RG Williams lab, Cleveland Clinic Foundation
Manufacture protocol ISG cDNA microarray was generated from a list of ISGs compiled from previous array experiments in our laboratory and others. Housekeeping genes and bacterial control genes were also included for standardization or normalization purposes. cDNA for genes was obtained, and arrays were printed as previously reported in Frevel MA, Bakheet T, Silva AM, Hissong JG, Khabar KS, Williams BR. p38 mitogen-activated protein kinase-dependent and-independent signaling of mRNA stability of AU-rich element-containing transcripts. Mol. Cell. Biol. 2003;23:425–436, and Sledz CA, Williams BR. RNA interference and double-stranded-RNA-activated pathways. Biochem. Soc. Trans. 2004;32:952–956.
Support glass
Coating polysine
 
Description Array contains 758 unique putative ISGs, 85 housekeeping genes, and 4 bacterial control genes.
 
Web link http://www.lerner.ccf.org/labs/williams/xchip-html.cgi
Contributor(s) Holko M, Williams BR
Citation(s) 16881864
Submission date Mar 11, 2009
Last update date May 22, 2009
Contact name Michelle Holko
E-mail(s) holko@ncbi.nlm.nih.gov
Phone (301) 496-5753
Organization name GEO
Department NCBI
Street address 45 Center Dr
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (12) GSM379277, GSM379278, GSM379279, GSM379280, GSM379281, GSM379282 
Series (2)
GSE15193 IFN-alpha Stimulated Gene Expression in Sensitive and Resistant Renal Cell Carcinoma Cell Lines
GSE16197 Transcription Factor Promyelocytic Leukemia Zinc Finger Protein regulates Interferon Stimulated Gene expression

Data table header descriptions
ID Unique Identifier
GB_ACC GenBank Accession
GENE DESCRIPTION Gene Description
CHROMOSOME Chromosomal location
SPOT_ID Spot Type

Data table
ID GB_ACC GENE DESCRIPTION CHROMOSOME SPOT_ID
428721 AA004638 ribosomal protein L4 15 Housekeeping Gene
429182 AA004759 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit 20
428756 AA005219 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) 2
429047 AA007509 tetratricopeptide repeat domain 3 21
359184 AA010079 protein kinase, interferon-inducible double stranded RNA dependent 2
430218 AA010352 Sjogren syndrome antigen A2 (60kD, ribonucleoprotein autoantigen SS-A/Ro) 1
359764 AA010781 KIAA0086 gene product 10
359835 AA011215 spermidine/spermine N1-acetyltransferase X
360885 AA012867 ADP-ribosylation factor 6 7
361565 AA017175 glutamate dehydrogenase 1 10q23.3 Housekeeping Gene
361323 AA017544 regulator of G-protein signalling 1 1
363058 AA019316 chloride channel 4 X
366389 AA025807 DKFZP564A122 protein
366579 AA026686 Homo sapiens cDNA: FLJ23269 fis, clone COL09533 2
469151 AA027240 eukaryotic translation initiation factor 2, subunit 2 (beta, 38kD ) 20
470062 AA029241 ligase III, DNA, ATP-dependent 17
471799 AA035455 cytosolic acyl coenzyme A thioester hydrolase 1
472008 AA036881 chemokine (C-C motif) receptor 1 3
376040 AA040332 ESTs 7
376423 AA041388 desmoglein 1 18

Total number of rows: 1235

Table truncated, full table size 70 Kbytes.




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