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Platform GPL8289 Query DataSets for GPL8289
Status Public on Dec 31, 2009
Title Affymetrix GeneChip Human Genome U133 Array Set HG-U133A based on a custom CDF (GeneAnnot version 1.4.5)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix HG-U133A microarrays analysed with custom chip definition files based on the GeneAnnot database.
For further information, see Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.: Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics. 2007 Nov 15;8(1):446
We used Version 1.4.5 of custom CDF files and R packages based on GeneAnnot version 1.7 and GeneCards version 2.38, available online at http://www.xlab.unimo.it/GA_CDF/
 
Submission date Mar 12, 2009
Last update date Dec 31, 2009
Contact name Klaus H Metzeler
E-mail(s) klaus.metzeler@med.uni-muenchen.de
Organization name University of Munich
Department Department of Internal Medicine III
Lab Laboratory for Leukemia Diagnostics
Street address Marchioninistr. 15
City Munich
ZIP/Postal code 81377
Country Germany
 
Samples (61) GSM379875, GSM379876, GSM379877, GSM379878, GSM379879, GSM379880 
Series (1)
GSE15210 Gene expression profiles of mono- and biallelic CEBPA mutations in cytogenetically normal AML

Data table header descriptions
ID
GeneCards ID GeneCards IDs can be searched at www.genecards.org
Gene Symbol
ORF Entrez Gene IDs
SPOT_ID

Data table
ID GeneCards ID Gene Symbol ORF SPOT_ID
GC00U921857_at GC00U921857 LOC652147 652147
GC00U990452_at GC00U990452 MYT2 8827
GC00U990668_at GC00U990668 HR44 27251
GC00U990680_at GC00U990680 HUMBINDC 29892
GC00U990706_at GC00U990706 LOC51190 51190
GC00U990780_at GC00U990780 HSAJ2425 55566
GC00U990809_at GC00U990809 KIAA0485 57235
GC00U990811_at GC00U990811 KIAA0506 57239
GC00U990813_at GC00U990813 KIAA0509 57242
GC01M001136_at GC01M001136 TNFRSF4 7293
GC01M001143_at GC01M001143 SDF4 51150
GC01M001236_at GC01M001236 CPSF3L 54973
GC01M001329_at GC01M001329 MRPL20 55052
GC01M001646_at GC01M001646 SLC35E2 9906
GC01M001715_at GC01M001715 NADK 65220
GC01M001748_at GC01M001748 GNB1 2782
GC01M001843_at GC01M001843 LOC339457 339457
GC01M001916_at GC01M001916 KIAA1751 85452
GC01M002145_at GC01M002145 ENSG00000182873 ENSG00000182873
GC01M002285_at GC01M002285 MORN1 79906

Total number of rows: 11174

Table truncated, full table size 435 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8289_gahgu133a_1.5.5.cdf.gz 5.2 Mb (ftp)(http) CDF

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