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Status
Public on Dec 31, 2009
Title
Affymetrix GeneChip Human Genome U133 Array Set HG-U133A based on a custom CDF (GeneAnnot version 1.4.5)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Description
Affymetrix HG-U133A microarrays analysed with custom chip definition files based on the GeneAnnot database. For further information, see Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.: Novel definition files for human GeneChips based on GeneAnnot. BMC Bioinformatics. 2007 Nov 15;8(1):446 We used Version 1.4.5 of custom CDF files and R packages based on GeneAnnot version 1.7 and GeneCards version 2.38, available online at http://www.xlab.unimo.it/GA_CDF/
Submission date
Mar 12, 2009
Last update date
Dec 31, 2009
Contact name
Klaus H Metzeler
E-mail(s)
klaus.metzeler@med.uni-muenchen.de
Organization name
University of Munich
Department
Department of Internal Medicine III
Lab
Laboratory for Leukemia Diagnostics
Street address
Marchioninistr. 15
City
Munich
ZIP/Postal code
81377
Country
Germany
Samples (61)
GSM379875 , GSM379876 , GSM379877 , GSM379878 , GSM379879 , GSM379880
GSM379881 ,
GSM379882 ,
GSM379883 ,
GSM379884 ,
GSM379885 ,
GSM379886 ,
GSM379887 ,
GSM379888 ,
GSM379889 ,
GSM379890 ,
GSM379891 ,
GSM379892 ,
GSM379893 ,
GSM379894 ,
GSM379895 ,
GSM379896 ,
GSM379897 ,
GSM379898 ,
GSM379899 ,
GSM379900 ,
GSM379901 ,
GSM379902 ,
GSM379903 ,
GSM379904 ,
GSM379905 ,
GSM379906 ,
GSM379907 ,
GSM379908 ,
GSM379909 ,
GSM379910 ,
GSM379911 ,
GSM379912 ,
GSM379913 ,
GSM379914 ,
GSM379915 ,
GSM379916 ,
GSM379917 ,
GSM379918 ,
GSM379919 ,
GSM379920 ,
GSM379921 ,
GSM379922 ,
GSM379923 ,
GSM379924 ,
GSM379925 ,
GSM379926 ,
GSM379927 ,
GSM379928 ,
GSM379929 ,
GSM379930 ,
GSM379931 ,
GSM379932 ,
GSM379933 ,
GSM379934 ,
GSM379935
Series (1)
GSE15210
Gene expression profiles of mono- and biallelic CEBPA mutations in cytogenetically normal AML
Data table header descriptions
ID
GeneCards ID
GeneCards IDs can be searched at www.genecards.org
Gene Symbol
ORF
Entrez Gene IDs
SPOT_ID
Data table
ID
GeneCards ID
Gene Symbol
ORF
SPOT_ID
GC00U921857_at
GC00U921857
LOC652147
652147
GC00U990452_at
GC00U990452
MYT2
8827
GC00U990668_at
GC00U990668
HR44
27251
GC00U990680_at
GC00U990680
HUMBINDC
29892
GC00U990706_at
GC00U990706
LOC51190
51190
GC00U990780_at
GC00U990780
HSAJ2425
55566
GC00U990809_at
GC00U990809
KIAA0485
57235
GC00U990811_at
GC00U990811
KIAA0506
57239
GC00U990813_at
GC00U990813
KIAA0509
57242
GC01M001136_at
GC01M001136
TNFRSF4
7293
GC01M001143_at
GC01M001143
SDF4
51150
GC01M001236_at
GC01M001236
CPSF3L
54973
GC01M001329_at
GC01M001329
MRPL20
55052
GC01M001646_at
GC01M001646
SLC35E2
9906
GC01M001715_at
GC01M001715
NADK
65220
GC01M001748_at
GC01M001748
GNB1
2782
GC01M001843_at
GC01M001843
LOC339457
339457
GC01M001916_at
GC01M001916
KIAA1751
85452
GC01M002145_at
GC01M002145
ENSG00000182873
ENSG00000182873
GC01M002285_at
GC01M002285
MORN1
79906
Total number of rows: 11174 Table truncated, full table size 435 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL8289_gahgu133a_1.5.5.cdf.gz
5.2 Mb
(ftp) (http)
CDF