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Platform GPL8309 Query DataSets for GPL8309
Status Public on Mar 17, 2009
Title Affymetrix Lactobacillus casei antisense CDS array
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organisms Lacticaseibacillus casei; Lactobacillus helveticus
Manufacturer Affymetrix, Inc.
Manufacture protocol E. coli Antisense Array Protocol
 
Description Platform includes 2,661 (97%) chromosomal and 17 (85%) plasmid CDSs predicted to occur in Lb. casei ATCC 334, as well as all predicted CDSs in the draft Lb. helveticus CNRZ 32 genome. CDSs that were not included in the microarray design were all transposase-encoding genes.
 
Submission date Mar 16, 2009
Last update date Mar 17, 2009
Contact name Hui Cai
E-mail(s) hcai2@wisc.edu
Organization name University of Wisconsin
Street address 1605 Linden Dr
City Madison
ZIP/Postal code 53706
Country USA
 
Samples (22) GSM380977, GSM380978, GSM380979, GSM380980, GSM380981, GSM380982 
Series (1)
GSE15030 Comparative genome hybridization for Lactobacillus casei

Data table header descriptions
ID
Probe ID
ORF Locus tag
GENOME_ACC RefSeq genome accession.version
SPOT_ID
Gene ID
Gene function
ChromStart
ChromEnd
Chromosome
Orientation
Species

Data table
ID Probe ID ORF GENOME_ACC SPOT_ID Gene ID Gene function ChromStart ChromEnd Chromosome Orientation Species
1 LSEI_0001_LSE1411_at LSEI_0001 NC_008526.1 RLSE01411 Chromosomal replication initiator protein dnaA 81 1427 NC_008526.1 + Lactobacillus casei
2 LSEI_0002_LSE1410_at LSEI_0002 NC_008526.1 RLSE01410 DNA polymerase III, beta chain (EC 2.7.7.7) 1603 2739 NC_008526.1 + Lactobacillus casei
3 LSEI_0003_LSE2837_at LSEI_0003 NC_008526.1 RLSE02837 Hypothetical cytosolic protein 3320 3529 NC_008526.1 + Lactobacillus casei
4 LSEI_0004_LSE1409_at LSEI_0004 NC_008526.1 RLSE01409 DNA replication and repair protein recF 3529 4641 NC_008526.1 + Lactobacillus casei
5 LSEI_0005_LSE1408_at LSEI_0005 NC_008526.1 RLSE01408 DNA gyrase subunit B (EC 5.99.1.3) 4897 6855 NC_008526.1 + Lactobacillus casei
6 LSEI_0006_LSE1407_at LSEI_0006 NC_008526.1 RLSE01407 DNA gyrase subunit A (EC 5.99.1.3) 6920 9538 NC_008526.1 + Lactobacillus casei
7 LSEI_0007_LSE1406_at LSEI_0007 NC_008526.1 RLSE01406 Deoxyribose-phosphate aldolase (EC 4.1.2.4) 10350 9649 NC_008526.1 - Lactobacillus casei
8 LSEI_0008_LSE1405_at LSEI_0008 NC_008526.1 RLSE01405 Single-strand DNA binding protein 10533 10961 NC_008526.1 + Lactobacillus casei
9 LSEI_0009_LSE1404_at LSEI_0009 NC_008526.1 RLSE01404 SSU ribosomal protein S6P 11092 11385 NC_008526.1 + Lactobacillus casei
10 LSEI_0010_LSE1086_at LSEI_0010 NC_008526.1 RLSE01086 Single-strand DNA binding protein 11419 12012 NC_008526.1 + Lactobacillus casei
11 LSEI_0011_LSE1087_at LSEI_0011 NC_008526.1 RLSE01087 SSU ribosomal protein S18P 12102 12335 NC_008526.1 + Lactobacillus casei
12 LSEI_0012_LSE1088_at LSEI_0012 NC_008526.1 RLSE01088 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) 12780 15266 NC_008526.1 + Lactobacillus casei
13 LSEI_0013_LSE2839_at LSEI_0013 NC_008526.1 RLSE02839 Hypothetical protein 15296 15487 NC_008526.1 + Lactobacillus casei
14 LSEI_0014_LSE3105_at LSEI_0014 NC_008526.1 RLSE03105 Hypothetical protein 15908 16123 NC_008526.1 + Lactobacillus casei
15 LSEI_0015_LSE3106_at LSEI_0015 NC_008526.1 RLSE03106 Hypothetical protein 16104 16295 NC_008526.1 + Lactobacillus casei
16 LSEI_0016_LSE3107_at LSEI_0016 NC_008526.1 RLSE03107 Hypothetical protein 16311 16523 NC_008526.1 + Lactobacillus casei
17 LSEI_0017_LSE1089_at LSEI_0017 NC_008526.1 RLSE01089 Hypothetical membrane spanning protein 17287 16697 NC_008526.1 - Lactobacillus casei
18 LSEI_0019_LSE1092_at LSEI_0019 NC_008526.1 RLSE01092 Hypothetical protein 19649 19350 NC_008526.1 - Lactobacillus casei
19 LSEI_0020_LSE1093_at LSEI_0020 NC_008526.1 RLSE01093 Cell wall hydrolase (amidase family) 21363 20176 NC_008526.1 - Lactobacillus casei
20 LSEI_0021_LSE1094_at LSEI_0021 NC_008526.1 RLSE01094 ABC transporter permease protein 24140 21570 NC_008526.1 - Lactobacillus casei

Total number of rows: 2697

Table truncated, full table size 377 Kbytes.




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Supplementary file Size Download File type/resource
GPL8309_CASEIa520464F.cdf.gz 598.0 Kb (ftp)(http) CDF
GPL8309_CASEIa520464F.txt.gz 190.7 Kb (ftp)(http) TXT

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