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Platform GPL8346 Query DataSets for GPL8346
Status Public on Mar 26, 2009
Title TIGR PFGRC Aspergillus fumigatus 22K v3 array (designed primarily based on strain Af293)
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Aspergillus fumigatus
Manufacturer TIGR PFGRC (The Pathogen Functional Genomics Resource Center)
Manufacture protocol 2QAF, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating unknown
 
Description This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks.
The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file.

*** A different version of this platform with the Oligo ID in the ID column is assigned accession number GPL21100.
 
Web link http://pfgrc.jcvi.org/index.php/microarray/array_description/aspergillus_fumigatus/version3.html
Contributor(s) Soriani FM, Malavazi I, Goldman GH
Submission date Mar 26, 2009
Last update date Nov 03, 2015
Contact name Gustavo Henrique Goldman
E-mail(s) ggoldman@usp.br
Phone 55-016-36024280
Fax 55-016-36024280
Organization name Faculty of Pharmaceutical Sciences of Ribeirao Preto
Department Departament of Pharmaceutical Sciences
Lab Laboratory of Molecular Biology
Street address Avenida do Café, s/n
City Ribeirao Preto
State/province Sao Paulo
ZIP/Postal code 14040-903
Country Brazil
 
Samples (13) GSM386988, GSM386989, GSM1954530, GSM1954531, GSM1954532, GSM1954533 
Series (2)
GSE15432 Transcriptome analysis of Aspergillus fumigatus delta crzA mutant upon 10 and 30 minutes treatment with CaCl2 (200 mM)
GSE75412 Gene expression in Aspergillus fumigatus at different developmental stages

Data table header descriptions
ID
Row Row of slide
Column Colunm of slide
Meta Row Meta row of slide
Meta Column Meta colunm of slide
Sub Row Row of block
Sub Column Colunm of block
Oligo ID Oligo identification
SEQUENCE Oligo sequence
GC% Oligo GC content of the sequencesequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Design Strain The strain of primary target
Design Target Locus primarily hit by the oligo
Common Name of Design Target Common Name of Design Target
ORF locus tag
SPOT_ID control, empty, etc.

Data table
ID Row Column Meta Row Meta Column Sub Row Sub Column Oligo ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Design Strain Design Target Common Name of Design Target ORF SPOT_ID
1 1 1 1 1 1 1 3QAF00001_D_1 AGCATGAAGTCATGAAATGGCTGACTTCCCTGAAAGTGCTAATGGGCACTGAAGACACAGACAGCGAATC 47.14 30 78 Af293 Afu2g02300 hypothetical protein AFUA_2g02300
2 1 2 1 1 1 2 3QAF00003_L_13 TGGCACCAAATTCGCAAGAACAATCACAAAGAGGTGGAACGTCGGCGTCGTGAAGCTATCAACGAGGGTA 50 29 63 Af293 Afu5g08020 HLH DNA binding protein (Penr2), putative AFUA_5g08020
3 1 3 1 1 1 3 3QAF00006_D_13 TCGAGGACGAGAATGTCGTGGTTTGGGCAGTCGTCTGGGAAGATTCCCATGGCAAATGTCAAGCAGATCT 51.43 29 79 Af293 Afu2g04930 hypothetical protein AFUA_2g04930
4 1 4 1 1 1 4 3QAF00009_L_1 GCCTACTTCATCCCCCTCGTGCTGGGAGGAATCTGCGAAACCTTCGGCTACTACGGCCGCGCATGGTCCC 62.86 30 67 Af293 Afu5g09900 RTA1 domain protein, putative AFUA_5g09900
5 1 5 1 1 1 5 3QAF00012_D_1 ATGTTGGTCAGAGGAGAAATAATTGTTCCACATCACTACGAATTCTACTATTTTATAGCAAATCAAGTAC 32.86 30 90 Af293 Afu6g10680 XAP5 domain protein AFUA_6g10680
6 1 6 1 1 1 6 Empty Empty Empty Empty EMPTY
7 1 7 1 1 1 7 3QAF00015_D_13 GGAGAGTAACGAATGCAACTCGAGCACTCAATTGCTTGACGGGACAATCCAGACGCTATCTACTCAAAAT 45.71 29 88 Af293 Afu1g04600 RING finger domain protein, putative AFUA_1g04600
8 1 8 1 1 1 8 3QAF00018_L_1 AAAACCATGGATATCTGAGTCCCGATGATCCTGCAGTATCCCCTTACAATCTGTGGAGTGTCAGGGCTCT 48.57 29 90 Af293 Afu1g03090 conserved hypothetical protein AFUA_1g03090
9 1 9 1 1 1 9 3QAF00021_D_1 GCCCGGTACCATTCACCTACTCTGCAGAAGCTTTCCCCCTCTACATTCGAGACATCGGCATGTCCTTCGC 55.71 30 77 Af293 Afu4g01560 MFS myo-inositol transporter, putative AFUA_4g01560
10 1 10 1 1 1 10 3QAF00023_L_13 TCGACCACTTAAAGATTGATCCAAAGAATCTCCGCTGCTATGATATCAAACCCATCATTATTGAAAACCG 38.57 30 81 Af293 Afu7g04880 UDP-glucose,sterol transferase AFUA_7g04880
11 1 11 1 1 1 11 3QAF00026_D_13 GTAATCCACGACATGGCTTCAAAGCTGTCGATGTTGTCCACACTATCTGCTATTCTTTGCTACTCTTGAA 42.86 30 81 Af293 Afu3g05700 Sec7 domain containing protein AFUA_3g05700
12 1 12 1 1 1 12 3QAF00002_P_1 AACCGACATGGGTGTGAGGTTAGAGGATCCTAGCGCAGCAGTATCAGAGGGGCATATCCTAGATACTGAT 50 30 79 Af293 Afu6g11760 hypothetical protein AFUA_6g11760
13 1 13 1 1 1 13 3QAF00005_H_1 TGACGACGCTAAGGAAAGCTCTAAACCCACCACGTCCCGTCATACCAACCTGGGCTCCACCCTTGTGGTG 57.14 29 72 Af293 Afu2g14780 conserved hypothetical protein AFUA_2g14780
14 1 14 1 1 1 14 3QAF00007_P_13 TAAGCGCTCGCGCAAAGGTAGGGATAGCAATTGGGAAAGTATACGCAACGAGTAAACCAGGATCCTTGTG 48.57 30 68 Obsolete Obsolete Obsolete --OBSOLETE
15 1 15 1 1 1 15 3QAF00010_H_13 AAGATGAAGTAGTTGGTATTATTGGATATGGGGTTGTTGATCCTGCAACATCATCGTCACTGAGCACGGT 42.86 29 84 Af293 Afu1g13630 glycerate dehydrogenase AFUA_1g13630
16 1 16 1 1 1 16 3QAF00027_P_1 ATTCTCCTCCCACAAATGATCTAATATGGTACTTCTCTTATTCACAATTCTCCAGTTACACACTAAACAA Control At1g03180 At1g03180 CONTROL
17 1 17 1 1 1 17 3QAF00014_H_1 CTAAGGACGACAACACCCCAAAAGAAGGATACCTCTACTATAATGACGCGTTGAGACATCATGAGAGGAG 45.71 29 86 Af293 Afu4g00650 conserved hypothetical protein AFUA_4g00650
18 1 18 1 1 1 18 3QAF00016_P_13 CAAGAGCATTGTATCCACTGCGGAGGAAATCATGAAGCCGCTGACAGTCTCTACGTTAGCTGCCCGTATC 51.43 30 78 Af293 Afu1g12870 conserved hypothetical protein AFUA_1g12870
19 1 19 1 1 1 19 3QAF00019_H_13 GTATCCTCCTAATTACGGATCTCCGCAACCTTACCAACAAATGCAGAACCATCATCACCAACAATCTTCC 44.29 30 62 Af293 Afu1g06700 metacaspase, putative AFUA_1g06700
20 1 20 1 1 1 20 3QAF00022_P_1 ACTACCAAGATGAGGAAGGGATTACTCCGCTTCATTGGGCTGCGATCAATAATCAATACGCCATGTGCAA 45.71 28 80 Af293 Afu2g07670 palmitoyltransferase (SidR), putative AFUA_2g07670

Total number of rows: 22176

Table truncated, full table size 3722 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL8346_A_fumigatus_3_Af293_condensed.txt.gz 489.3 Kb (ftp)(http) TXT

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