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Platform GPL8351 Query DataSets for GPL8351
Status Public on Dec 31, 2009
Title Yeast ncRNA and expression array 45K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent
Manufacture protocol Custom in situ DNA synthesis on glass slides.
Catalog number 17433
Support glass
Coating unknown
 
Description Array incorporates the probe set previously developed for analyzing ncRNAs from yeast (PMID 15920104). Additional probes are included for estimating mRNA expression for ~6000 genes, previously predicted snoRNAs (PMID 17577407) and ncRNAs that were excluded from the original study.
 
Submission date Mar 26, 2009
Last update date Dec 31, 2009
Contact name Jay R. Hesselberth
E-mail(s) jay.hesselberth@cuanschutz.edu
Organization name University of Colorado School of Medicine
Department Biochemistry and Molecular Gentetics
Lab Jay Hesselberth
Street address 12801 E 17TH AVE
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
 
Samples (4) GSM386978, GSM386979, GSM386980, GSM386981
Series (1)
GSE15418 Analysis of non-coding RNAs in drn1∆ deletion strains

Data table header descriptions
ID
ProbeName
ORF
SEQUENCE
SPOT_ID

Data table
ID ProbeName ORF SEQUENCE SPOT_ID
1 GE_BrightCorner GE_BrightCorner
2 DarkCorner DarkCorner
3 DarkCorner DarkCorner
4 DarkCorner DarkCorner
5 DarkCorner DarkCorner
6 DarkCorner DarkCorner
7 DarkCorner DarkCorner
8 DarkCorner DarkCorner
9 DarkCorner DarkCorner
10 DarkCorner DarkCorner
11 DarkCorner DarkCorner
12 JH10699 JH10699 GTGTTGCACATTCATCAGAGTGTTGCACATTCATCAGAGTGTTGCACATTCATCAGAGTG
13 SH1403 SH1403 AGCTGATCGCTAATTCAAACACAGCTGATCGCTAATTCAAACACAGCTGATCGCTAATTC
14 JH5537 JH5537 AGCACCCATTAGAAATTGAGCACCCATTAGAAATTGAGCACCCATTAGAAATTGAGCACC
15 JH12447 JH12447 GACAAATTCTCGTTCTGCGGACAAATTCTCGTTCTGCGGACAAATTCTCGTTCTGCGGAC
16 JH13480 JH13480 TGCAATGAATTTTCGCAACGTGCAATGAATTTTCGCAACGTGCAATGAATTTTCGCAACG
17 SH1352 SH1352 GTTGAAATTTTTGTATCATATGTTTGTATATAGTTGAAATTTTTGTATCATATGTTTGTA
18 JH9107 JH9107 ACCATGTACAGTCGATCTTAACCATGTACAGTCGATCTTAACCATGTACAGTCGATCTTA
19 SH18088 SH18088 GGCAAAAATGAATGTATAATGAAGATACGGCAAAAATGAATGTATAATGAAGATACGGCA
20 SH1713 SH1713 CCGTCCAACAGATCTTAAGTCCCGTCCAACAGATCTTAAGTCCCGTCCAACAGATCTTAA

Total number of rows: 45220

Table truncated, full table size 3576 Kbytes.




Download family Format
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Supplementary data files not provided

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