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Status
Public on Nov 18, 2009
Title
PICME Poplar 28K Series 3
Technology type
spotted DNA/cDNA
Distribution
custom-commercial
Organisms
Populus trichocarpa x Populus deltoides ; Populus euphratica ; Populus tremula x Populus alba Manufacturer
Austrian Research Centers GmbH - ARC, PICME
Manufacture protocol
Spottingbuffer: 3xSSC+ 1,5MBetain
Support
glass
Coating
aminosilane
Description
This platform represents all slides of Series 3, i.e. 3_1_4, 3_1_5 and 3_2_1, which are fully identical in their properties.
Web link
http://www.picme.at Contributor(s)
Martin F , Leple JC , Kangasjarvi J , Fluch S Submission date
Apr 24, 2009
Last update date
Mar 23, 2016
Contact name
Gail Taylor
E-mail(s)
m.j.tallis@soton.ac.uk Phone
0044(0)2380592335
Fax
0044(0)2380594459
Organization name
University of Southampton
Street address
Bassett Crescent East
City
Southampton
ZIP/Postal code
SO16 7PX
Country
United Kingdom
Samples (33)
GSM398292 , GSM398296 , GSM398301 , GSM398303 , GSM398304 , GSM398305
GSM398306 ,
GSM398313 ,
GSM398314 ,
GSM2097527 ,
GSM2097528 ,
GSM2097529 ,
GSM2097530 ,
GSM2097531 ,
GSM2097532 ,
GSM2097533 ,
GSM2097534 ,
GSM2097535 ,
GSM2097536 ,
GSM2097537 ,
GSM2097538 ,
GSM2097539 ,
GSM2097540 ,
GSM2097541 ,
GSM2097542 ,
GSM2097543 ,
GSM2097544 ,
GSM2097545 ,
GSM2097546 ,
GSM2097547 ,
GSM2097548 ,
GSM2097549 ,
GSM2097550 Series (2)
GSE15874 The Populus transcriptome in elevated CO2 reveals increased anthocyanin biosynthesis during delayed autumnal senescence
GSE79420 Genetic Manipulation of Putrescine Biosynthesis Reprograms the Cellular Transcriptome and the Metabolome
Data table header descriptions ID Unambiguous identifier of a spot
Block Block# of spot on array
Row Row# of spot in block
Column Column# of spot in block
Provider_ID PICME ID for spotted cDNA
Name cDNA name in corresponding library from which cDNA originated
Status PCR status (OK, contaminated, unsuccessful, ...)
GB_ACC GenBank Accession#
Genus Genus of spotted cDNA
ORGANISM Organism of spotted cDNA
Library Exact library name of spotted cDNA
Gel_Seq_Length Sequence Length determined from agarosis gel analysis
SEQUENCE Sequence from PICME-internal sequencing if available, NCBI Sequence otherwise
SPOT_ID
Data table ID Block Row Column Provider_ID Name Status GB_ACC Genus ORGANISM Library Gel_Seq_Length SEQUENCE SPOT_ID 10101
1
1
1
[297592][81306]
OligoCy3
OK
no length information
--OligoCy3
10102
1
1
2
[297580][81298]
Spottingbuffer
OK
no length information
--Spottingbuffer
10103
1
1
3
[297688][81402]
OligoCy5
OK
no length information
--OligoCy5
10104
1
1
4
[297676][81298]
Spottingbuffer
OK
no length information
--Spottingbuffer
10105
1
1
5
[297784][43957]
HTAU441
OK
Homo
Homo sapiens
no length information
ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
NM_005910.3
10106
1
1
6
[297772][81298]
Spottingbuffer
OK
no length information
--Spottingbuffer
10107
1
1
7
[297880][43957]
HTAU441
OK
Homo
Homo sapiens
no length information
ACAGCGGAAGATGTGACAGCACCCTTAGTGGATGAGGGAGCTCCCGGCAAGCAGGCTGCCGCGCAGCCCCACACTGAGATCCCAGAAGGAACCACAGCTGAAGAAGCAGGCATTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAAGACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAACGAAGATCGCCACACCGCGGGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCCGCTCCAAAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGGCACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGGTCCGTACTCCACCCAAGTCGCCG
NM_005910.3
10108
1
1
8
[297868][43941]
Hbeta-Sinuclein
OK
Homo
Homo sapiens
no length information
TTCCTCCTGGGGTGGGTCCTCATAACTCTCCCCTTCTGGCTCCATCAGGGGCTCAATCAGTGGTTCTTCAGCAGCTTCCTGGGCCACTTCCTCTGGCTTCAGATCAGTANGGAATTCCTCCCTCTTCACCAGTCCTGTGGCTGCTGCGATGTTCCCTGCCCCAGAGAACACAGCTCCTCCCAGATGTGAGGCCTGTTCCTTGGTTTTTTCAGACACTGAAGCCACACCTTGTACCACACCTTCTCGGGTCTTGCTTCCGACGTAGAGGACGCCCTCCTTGGTCTTCTCCGCCGCCTCGGAGACCCCCTGCTTGGTTTTCTCCGCGGCT
NM_001001502.1
10109
1
1
9
[178101][43925]
Cy3Oligo
OK
557bp
--Cy3--Oligo
10110
1
1
10
[178095][43925]
Cy3Oligo
OK
551bp
--Cy3--Oligo
10111
1
1
11
[178125][43925]
Cy3Oligo
OK
564bp
--Cy3--Oligo
10112
1
1
12
[178119][43925]
Cy3Oligo
OK
556bp
--Cy3--Oligo
10113
1
1
13
[178149][43925]
Cy3Oligo
OK
566bp
--Cy3--Oligo
10114
1
1
14
[178143][43925]
Cy3Oligo
OK
558bp
--Cy3--Oligo
10115
1
1
15
[178173][43925]
Cy3Oligo
OK
567bp
--Cy3--Oligo
10116
1
1
16
[178167][43925]
Cy3Oligo
OK
562bp
--Cy3--Oligo
10117
1
1
17
[178485][7254]
R09A12
OK
CA822500 Poplar
Populus trichocarpa x Populus deltoides
Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre'
1320bp
CTGCATATAAATGCAACACAAAACTCGAATCTTCTCTCTGTCTTCTCGATTCCTTGTTTCTTGATCTGTTCTGTCACAACAACGTAACAACCATGTCTCAGGTACCCAAATCTTCATTTCTTGATTCTTCTTTTTTGGGGGCAAAGTTCGTATTTTTATTGTTNGTTAATACTATGTTCTTGTTGTTTTGACTTGTATTGGGATGTCTATGAATTTTGGCTGAATTTGGGTGGATATGTTGGA
10118
1
1
18
[178479][7248]
R09A06
OK
CA822494 Poplar
Populus trichocarpa x Populus deltoides
Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre'
no length information
CCGAGACTGGCGAATTTGCCGGGAAATGGTGACTTCCCCCGATTCCGACTCCGGCGGCCATTCTTCAATACAATATTTTCGGTAATCTTTTTGAAATCCGTCGAAATATCGACCTCCGATCACTCCGATTGGTCGTGGTGCCTACGGCATCGTCTGCTCTGTGTTGAATTCGGAGACGAACGAGATGGTGGCGGTGAAGAAGATAGCCAACGCTTTTGATATCAAATGGACGCCAAGCGCACCCTTCGTGAGATAAACTGCTTCGCCATTCGGAT
10119
1
1
19
[178509][7178]
R08B03
OK
CA822424 Poplar
Populus trichocarpa x Populus deltoides
Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre'
496bp
CTAGCTTCCACAGCCAGATAAACACACAGGAGGNGCGCGATTCCCACCTTTCAAAGATGCCGATCAGGAACATTGCCGTGGGCCACTACCGTGAGAACAACTCAGCCAGAATGCCTTGAAGGCAGCCTTGGCTGAGTTCATCTCCACCCTTATTTTTGTCTTTGCCGGTGAAGGGTCCGGCATGGCCTTCAGCAAACTCACCGATGGAGCTTCCAACACACCCGCTGGACTCATAGCCGCAGCTATAGCCCATGCTTTCGCTCTTTTTGTTGCTGTTTCTGTTGGTGCCAACATCTCCGGTGGCCATGTCAACCCCG
10120
1
1
20
[178503][7271]
R09C06
OK
CA822517 Poplar
Populus trichocarpa x Populus deltoides
Populus balsamifera subsp. trichocarpa x Populus deltoides, two-month-old roots from clone 'Beaupre'
no length information
TGAATTTTCTTGTTGAAGTGATTGATGATGCCTCTTGTTAAGAAAGCTTTTTGATGTTGTTCCTTTCCACACATCCTCCATCTTGCTGCACAAGCTGGGGTTCGTTATGCCATACAAAACCCACAATCCTACGTGAGCTCAAACATTGCAGGTTTTGTCAATCTTCTTGAAGTTGCAAAAGCTGCAAATCCCAGCCAGCTATTGTCTGGGCATCATCAAGTTCAGTTATGGACTGAACACTCAAGTACCCTTCTCAGAATTGGATAGAACAGATCANCCAGCAAGTCTTTTGCC
27648 16921 Kbytes .Supplementary data files not provided
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