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Platform GPL8499 Query DataSets for GPL8499
Status Public on May 01, 2009
Title sm6koligo
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Sinorhizobium meliloti 1021
Manufacturer Center for Biotechnology (CeBiTec), Bielefeld university,Germany
Manufacture protocol for more information visit: http://www.cebitec.uni-bielefeld.de/transcriptomics/transcriptomics-facility/sm6koligo.html
 
Description Array with 20160 features, in 48 zones, with 6229 biosequences representing 6230 reporters and 0 composite sequences, with surface type epoxy. (Submitter's description 1): Sm6kOligo microarrays represent all currently predicted protein-coding genes of the soil bacterium Sinorhizobium meliloti 1021
 
Submission date Apr 29, 2009
Last update date May 01, 2009
Contact name HONG GUO
Organization name MCMASTER UNIVERSITY
Department BIOLOGY
Lab DR.XU,JP
Street address 1280Main St. West
City Hamilton
State/province Ontario
ZIP/Postal code L8S 4K1
Country Canada
 
Samples (15) GSM399002, GSM399003, GSM399004, GSM399005, GSM399006, GSM399007 
Series (2)
GSE15889 Genome Variation in the Symbiotic Nitrogen-Fixing Bacterium Sinorhizobium meliloti
GSE74449 A consolidated analysis of the physiological and molecular responses induced under acid stress in the legume symbiont model soil bacterium Sinorhizobium meliloti

Data table header descriptions
ID
ORF locus tag
GENE SYMBOL gene symbol
SEQUENCE oligonucleotide sequence
DESCRIPTION description
GENOME_ACC genome accession of the source
SPOT_ID spot identifier

Data table
ID ORF GENE SYMBOL SEQUENCE DESCRIPTION GENOME_ACC SPOT_ID
1 SMa1894 GACAGCCATCTCGGCCATGTGTTTCCCGACGGCCCTCAGGATCGGGGCGGCCTGCGTTACTGCATCAATT Hypothetical protein AE006469
2 SMb20592 rpo GATCATCGCCTTTCCCCTCAATTCAGGCATCAGCGATCCGGAAAAGACGATGGCACAGCGACAAATCCTC putative RNA polymerase sigma factor protein Al591985
3 SMc00242 GATGGCGGAAGCGACGGAGGCGAAAATCAAATCCGGCGAGCTGAAGCCGTTTACCGGTCCGCTCAACAAG HYPOTHETICAL SIGNAL PEPTIDE PROTEIN AL591688
4 SMc01177 GTCCGGGTCTTGACGCGATCATATAGGATGTCACGCGAAGCCGTTGCCAGCGTTATCGAAACTTTGTTGC CONSERVED HYPOTHETICAL PROTEIN AL591688
5 SMc02606 soxA1 CAAATCGCCGCTCCATGATTGGGCAAAGAAACACGGTGCCGTCTTCGTTGAGACGGGTCTCTGGTATCGA PUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN AL591688
6 SMc04084 pdxK GCTGGTGACATCGGCGATACCGATGATGAGCGGCGGTACGGGCAATCTTTACCTGTCCGGACGCCATGCG PUTATIVE PYRIDOXAL KINASE PROTEIN AL591688
7 SMc00335 rpsA AAGCAGCTCGAGTCCGATCCGTGGGATGGCATCGGTGCGAAGTATCCGGTCGGCAAGAAGATCTCCGGTA 30S RIBOSOMAL PROTEIN S1 AL591688
8 SMa1894 GACAGCCATCTCGGCCATGTGTTTCCCGACGGCCCTCAGGATCGGGGCGGCCTGCGTTACTGCATCAATT Hypothetical protein AE006469
9 SMb20592 rpo GATCATCGCCTTTCCCCTCAATTCAGGCATCAGCGATCCGGAAAAGACGATGGCACAGCGACAAATCCTC putative RNA polymerase sigma factor protein Al591985
10 SMc00242 GATGGCGGAAGCGACGGAGGCGAAAATCAAATCCGGCGAGCTGAAGCCGTTTACCGGTCCGCTCAACAAG HYPOTHETICAL SIGNAL PEPTIDE PROTEIN AL591688
11 SMc01177 GTCCGGGTCTTGACGCGATCATATAGGATGTCACGCGAAGCCGTTGCCAGCGTTATCGAAACTTTGTTGC CONSERVED HYPOTHETICAL PROTEIN AL591688
12 SMc02606 soxA1 CAAATCGCCGCTCCATGATTGGGCAAAGAAACACGGTGCCGTCTTCGTTGAGACGGGTCTCTGGTATCGA PUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN AL591688
13 SMc04084 pdxK GCTGGTGACATCGGCGATACCGATGATGAGCGGCGGTACGGGCAATCTTTACCTGTCCGGACGCCATGCG PUTATIVE PYRIDOXAL KINASE PROTEIN AL591688
14 SMc00335 rpsA AAGCAGCTCGAGTCCGATCCGTGGGATGGCATCGGTGCGAAGTATCCGGTCGGCAAGAAGATCTCCGGTA 30S RIBOSOMAL PROTEIN S1 AL591688
15 SMa1894 GACAGCCATCTCGGCCATGTGTTTCCCGACGGCCCTCAGGATCGGGGCGGCCTGCGTTACTGCATCAATT Hypothetical protein AE006469
16 SMb20592 rpo GATCATCGCCTTTCCCCTCAATTCAGGCATCAGCGATCCGGAAAAGACGATGGCACAGCGACAAATCCTC putative RNA polymerase sigma factor protein Al591985
17 SMc00242 GATGGCGGAAGCGACGGAGGCGAAAATCAAATCCGGCGAGCTGAAGCCGTTTACCGGTCCGCTCAACAAG HYPOTHETICAL SIGNAL PEPTIDE PROTEIN AL591688
18 SMc01177 GTCCGGGTCTTGACGCGATCATATAGGATGTCACGCGAAGCCGTTGCCAGCGTTATCGAAACTTTGTTGC CONSERVED HYPOTHETICAL PROTEIN AL591688
19 SMc02606 soxA1 CAAATCGCCGCTCCATGATTGGGCAAAGAAACACGGTGCCGTCTTCGTTGAGACGGGTCTCTGGTATCGA PUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN AL591688
20 SMc04084 pdxK GCTGGTGACATCGGCGATACCGATGATGAGCGGCGGTACGGGCAATCTTTACCTGTCCGGACGCCATGCG PUTATIVE PYRIDOXAL KINASE PROTEIN AL591688

Total number of rows: 20160

Table truncated, full table size 2651 Kbytes.




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Supplementary file Size Download File type/resource
GPL8499_Sm6kOligo_layout.txt.gz 191.5 Kb (ftp)(http) TXT

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