GEO help: Mouse over screen elements for information.
Status
Public on Aug 31, 2010
Title
Illumina MouseRef8 Ver1.1
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Illumina, Inc.
Manufacture protocol
See manufacturer's website
Web link
http://www.illumina.com Submission date
May 08, 2009
Last update date
Jan 18, 2013
Contact name
Minghui Jessica Chen
Organization name
Menzies Research Institute
Department
Neuroscience group
Lab
A/P Steve Cheung
Street address
Menzies Research Institute, University of Tasmania, Private Bag 24
City
Hobart
State/province
Tasmania
ZIP/Postal code
7001
Country
Australia
Samples (82)
GSM401312 , GSM401313 , GSM401314 , GSM401315 , GSM401316 , GSM401317
GSM401318 ,
GSM401319 ,
GSM401320 ,
GSM401321 ,
GSM401322 ,
GSM401323 ,
GSM401324 ,
GSM401325 ,
GSM401326 ,
GSM401327 ,
GSM401328 ,
GSM401329 ,
GSM401330 ,
GSM401331 ,
GSM401332 ,
GSM401333 ,
GSM401334 ,
GSM401335 ,
GSM807664 ,
GSM807665 ,
GSM807666 ,
GSM807667 ,
GSM807668 ,
GSM807669 ,
GSM807670 ,
GSM807671 ,
GSM807672 ,
GSM807673 ,
GSM807674 ,
GSM807675 ,
GSM807676 ,
GSM807677 ,
GSM830262 ,
GSM830263 ,
GSM830264 ,
GSM830265 ,
GSM830266 ,
GSM830267 ,
GSM830268 ,
GSM830269 ,
GSM830270 ,
GSM830271 ,
GSM830272 ,
GSM830273 ,
GSM830274 ,
GSM830275 ,
GSM830276 ,
GSM830277 ,
GSM830278 ,
GSM830279 ,
GSM830280 ,
GSM830281 ,
GSM830282 ,
GSM830283 ,
GSM830284 ,
GSM830285 ,
GSM830286 ,
GSM830287 ,
GSM830288 ,
GSM830289 ,
GSM830290 ,
GSM830291 ,
GSM830292 ,
GSM830293 ,
GSM1646734 ,
GSM1646735 ,
GSM1646736 ,
GSM1646737 ,
GSM1646738 ,
GSM1646739 ,
GSM1646740 ,
GSM1646741 ,
GSM1646742 ,
GSM1646743 ,
GSM1646744 ,
GSM1646745 Series (4)
GSE16035 Global gene profiling comparison between hydrogen sulfide- and N-methyl-D-aspartate-induced neuronal deaths
GSE24197 Systemic Comparison of Heat Shock Response Induced by Heat Shock and a Proteasome Inhibitor in Mouse Fibrosarcoma Cells and Their Thermotolerant Counterparts
GSE32586 Transcriptomic and metabolomic analysis of autosomal dominant polycystic kidney disease identifies HNF4α as a disease modifier
GSE67430 Caloric restriction induces heat shock response and inhibits B16F10 cell tumorigenesis both in vitro and in vivo
Data table header descriptions ID Symbol Gene symbol
Type Information about what the probe is targeting
Start Position of the probe relative to the source transcript sequence
GB_ACC GenBank and RefSeq accessions
CLONE_ID Clone identifier
ORF Locus tag or gene symbol
ProbeId SEQUENCE Probe sequence
Definition Gene description
Ontology Annotation from Gene Ontology project
Synonym Gene symbol synonym
SPOT_ID
Data table ID Symbol Type Start GB_ACC CLONE_ID ORF ProbeId SEQUENCE Definition Ontology Synonym SPOT_ID 18S_rRNA_X00686_523-S
Pigt
S
2220
NM_133779.1 6840019
CAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTT
Mus musculus phosphatidylinositol glycan, class T (Pigt), mRNA.
4930534E15Rik;CGI-06
GI_10304988-S
St6galnac3
S
3647
NM_011372.1 4070563
GCTCCTGTTGGCCCTGCAGGTACTAGTCCACCGAAAGATTTTATCCACAC
Mus musculus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (St6galnac3), mRNA.
go_component: Golgi stack [goid 0005795] [evidence IEA]; go_component: integral to membrane [goid 0016021] [evidence IEA]; go_component: integral to Golgi membrane [goid 0030173] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]; go_function: transferase activity, transferring glycosyl groups [goid 0016757] [evidence IEA]
Siat7c
GI_11079652-S
L1cam
S
3696
NM_008478.2 4850021
CAGTGGCAAGAAAGAGAAGGAGGCAGCAGGAGGCAATGACAGTTCAGGGG
Mus musculus L1 cell adhesion molecule (L1cam), mRNA.
go_component: plasma membrane [goid 0005886] [evidence IEA]; go_component: integral to membrane [goid 0016021] [evidence TAS] [pmid 12466851]; go_component: extracellular space [goid 0005615] [evidence TAS] [pmid 12466851]; go_function: cell adhesion molecule activity [goid 0005194] [evidence IEA]; go_process: cell adhesion [goid 0007155] [evidence IEA]; go_process: axon guidance [goid 0007411] [evidence IMP] [pmid 12533613]; go_process: development [goid 0007275] [evidence IEA]; go_process: neurogenesis [goid 0007399] [evidence IEA]
CD171;L1
GI_12963686-S
Ssna1
S
526
NM_023464.1 360593
GCCCAGAGGGGCAATTTCTGACCTCCACCTGCCTAGACAAGAAAAGCCCT
Mus musculus Sjogren's syndrome nuclear autoantigen 1 (Ssna1), mRNA.
go_component: nucleus [goid 0005634] [evidence IEA]; go_function: identical protein binding [goid 0042802] [evidence IPI]
1110003H09Rik;1190004J23Rik;AA934184;N14;NA14
GI_12963764-I
Sars2
I
1278
NM_023637.1 3190390
ACCAGTGCCTCCAACTGCACAGACTTCCAGAGCCGCCGCCTGTACATCAT
Mus musculus seryl-aminoacyl-tRNA synthetase 2 (Sars2), mRNA.
go_component: mitochondrion [goid 0005739] [evidence IEA]; go_function: ligase activity [goid 0016874] [evidence IEA]; go_function: nucleotide binding [goid 0000166] [evidence IEA]; go_function: tRNA ligase activity [goid 0004812] [evidence IEA]; go_process: protein biosynthesis [goid 0006412] [evidence IEA]
2410015F05Rik;D7Ertd353e;SerRSmt
GI_13385605-S
Tmco5
S
883
NM_026104.1 6620148
CGCGCTGCCTAAGATACTGAGCAGGGACGTCTTGTGGAAGCTGAGATGTT
Mus musculus transmembrane and coiled-coil domains 5 (Tmco5), mRNA.
1700095F04Rik
GI_13385611-S
Hdhd1a
S
641
NM_026108.1 6220328
ACACGAAAAGCCACCCTGGTGCTGAGTTCCCTCCACGACTTCAAGCCTGA
Mus musculus haloacid dehalogenase-like hydrolase domain (Hdhd1a), mRNA.
go_function: hydrolase activity [goid 0016787] [evidence ISS] [pmid 12466851]; go_process: metabolism [goid 0008152] [evidence ISS] [pmid 12466851]
1700121L12Rik;GS1
GI_13399317-S
0610007P06Rik
S
571
NM_026304.1 1010368
GCAGTGCTGCCGTGTCCTCCGTTGACTCCTTTACGCAGTTCACACAGAAG
Mus musculus RIKEN cDNA 0610007P06 gene (0610007P06Rik), mRNA.
1110002N09Rik;l7Rn6
GI_14211543-S
Sval2
S
229
NM_032542.1 6110113
ATCAAGTACCTTTCTGCTCACGCCATTTACACTTCCTGCCTTTGCAGTGC
Mus musculus seminal vesicle antigen-like 2 (Sval2), mRNA.
SLP-M
GI_16716526-S
V1ra5
S
621
NM_053220.1 3170373
AGTGGCCCTTTTATGCATGCACAGGAAACAGACCCAGCATCTTCAGGAAA
Mus musculus vomeronasal 1 receptor, A5 (V1ra5), mRNA.
go_component: integral to membrane [goid 0016021] [evidence TAS] [pmid 12466851]; go_function: receptor activity [goid 0004872] [evidence ISS] [pmid 11116090]; go_function: pheromone receptor activity [goid 0016503] [evidence ISS] [pmid 12466851]; go_function: rhodopsin-like receptor activity [goid 0001584] [evidence ISS] [pmid 12466851]; go_process: sensory perception of chemical stimulus [goid 0007606] [evidence TAS] [pmid 11116090]; go_process: G-protein coupled receptor protein signaling pathway [goid 0007186] [evidence ISS] [pmid 12466851]
V1RA2
GI_17505211-S
Ap3m2
S
3069
NM_029505.1 6370474
GCAGGTCACTTTCACAGGCTCTGGGGGTGGGGATTCCAAGTTTTCTTGGG
Mus musculus adaptor-related protein complex 3, mu 2 subunit (Ap3m2), mRNA.
go_component: Golgi stack [goid 0005795] [evidence IEA]; go_process: protein transport [goid 0015031] [evidence IEA]
5830445E16Rik;AP-3B
GI_18017595-S
Snx4
S
2110
NM_080557.1 1980358
GGTGTAGCATCTCCATGTGTGAGACACTCGTAGTGAGCACATGTGAGCGG
Mus musculus sorting nexin 4 (Snx4), mRNA.
1810036H14Rik;AI037066
GI_19527165-S
Vrk3
S
1632
NM_133945.1 7150743
TCCCTGTCTCAGCTCTGGCAGCTGTGGATGGAGGTAAGTGGATGCTGGCG
Mus musculus vaccinia related kinase 3 (Vrk3), mRNA.
go_component: nucleus [goid 0005634] [evidence IDA]; go_function: ATP binding [goid 0005524] [evidence IEA]; go_function: kinase activity [goid 0016301] [evidence IEA]; go_function: nucleotide binding [goid 0000166] [evidence IEA]; go_function: transferase activity [goid 0016740] [evidence IEA]
AI428238
gi_21070949_ref_NM_019639.2__151-S
Ubc
S
2596
NM_019639.2 1190129
GACAGACGTACCTTCCTCACCACAGTATCTAAAAAGAGCCCTCCTTGTGC
Mus musculus ubiquitin C (Ubc), mRNA.
2700054O04Rik;AI194771;TI-225
gi_21070949_ref_NM_019639.2__531-S
Ubc
S
2553
NM_019639.2 1570161
GGACGTCGAGCCCAGTGTTACCACCAAGAAGGTCAAACAGGAAGACAGAC
Mus musculus ubiquitin C (Ubc), mRNA.
2700054O04Rik;AI194771;TI-225
GI_21070949-S
Ubc
S
8
XM_147315.1 6770097
CCGCACCCTGTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGG
Mus musculus ubiquitin C (Ubc), mRNA.
go_component: nucleus [goid 0005634] [evidence IEA]
2700054O04Rik;AI194771;TI-225
GI_21311970-S
Ubc
S
15
XM_147315.1 7100500
CCTTCCTCACCACAGTATCTAAAAAGAGCCCTCCTTGTGCTTGTTCTTGG
Mus musculus ubiquitin C (Ubc), mRNA.
go_component: nucleus [goid 0005634] [evidence IEA]
2700054O04Rik;AI194771;TI-225
GI_21312249-S
Nol9
S
2134
NM_028727.1 2490286
CCGTGTTCCAAAGTGATGAGCGAGATTGTCTATAAAAGGCCCTGCCAAGG
Mus musculus nucleolar protein 9 (Nol9), mRNA.
go_function: sugar binding [goid 0005529] [evidence IEA]; go_function: hydrolase activity [goid 0016787] [evidence IEA]; go_function: carboxypeptidase activity [goid 0004180] [evidence IEA]
4632412I24Rik;6030462G04Rik;AI449622;AW490720
GI_21312925-I
Bbs5
S
1075
NM_028284.1 6480626
CACTGCAGGGACTTTGGGATGAGTTAATCTTGAATGAGTTGAGCTGGACC
Mus musculus Bardet-Biedl syndrome 5 (human) (Bbs5), mRNA.
1700049I01Rik;2700023J09Rik
GI_21313189-S
Josd3
I
910
NM_029248.1 1110543
CAAGACCCCAGCCTCGCCCTTTTGCTCATCTGCAGAGCAAGGTCATGAAG
Mus musculus Josephin domain containing 3 (Josd3), transcript variant 2, mRNA.
2810003M17Rik;4930553M18Rik;5930426I11Rik;MGC117821
24691 9826 Kbytes .Supplementary data files not provided
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