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Status
Public on Oct 01, 2015
Title
Agilent_custom_Human_MCF7_10K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
See manufacturer's web site at http://www.agilent.com/
Support
glass
Coating
unknown
Description
A custom array containing 60-mer oligonucleotides to monitor 5,114 well characterized human transcripts that are chemically responsive in the MCF7 breast cancer cell line.
Contributor(s)
Vanparys C , Maras M , Van Leemput K , van der Ven K , Allemeersch J , Del Favero J , Van Hummelen P , Blust R , De Coen W
Submission date
Jun 03, 2009
Last update date
Oct 01, 2015
Contact name
Rekin's Janky
E-mail(s)
Nucleomics.Bioinformatics@vib.be
Organization name
VIB
Department
Nucleomics Core
Street address
Herestraat 49 Box 816
City
Leuven
ZIP/Postal code
B-3000
Country
Belgium
Samples (183)
GSM423101 , GSM423102 , GSM423103 , GSM423104 , GSM423105 , GSM423106
GSM423107 ,
GSM423108 ,
GSM423109 ,
GSM423110 ,
GSM423111 ,
GSM423112 ,
GSM423113 ,
GSM423114 ,
GSM423115 ,
GSM423116 ,
GSM423117 ,
GSM423118 ,
GSM423119 ,
GSM423120 ,
GSM423121 ,
GSM423122 ,
GSM423123 ,
GSM423124 ,
GSM423125 ,
GSM423126 ,
GSM423127 ,
GSM423128 ,
GSM423129 ,
GSM423130 ,
GSM423131 ,
GSM423132 ,
GSM423133 ,
GSM423134 ,
GSM423135 ,
GSM423136 ,
GSM423137 ,
GSM423138 ,
GSM423139 ,
GSM423140 ,
GSM423141 ,
GSM423142 ,
GSM423143 ,
GSM423144 ,
GSM423145 ,
GSM423146 ,
GSM423147 ,
GSM423148 ,
GSM423149 ,
GSM423150 ,
GSM423151 ,
GSM423152 ,
GSM423153 ,
GSM423154 ,
GSM423155 ,
GSM423156 ,
GSM423157 ,
GSM423158 ,
GSM423159 ,
GSM423160 ,
GSM423161 ,
GSM423162 ,
GSM423163 ,
GSM423164 ,
GSM423165 ,
GSM423166 ,
GSM423167 ,
GSM423168 ,
GSM423169 ,
GSM423170 ,
GSM423171 ,
GSM423172 ,
GSM423173 ,
GSM423174 ,
GSM423175 ,
GSM423176 ,
GSM423177 ,
GSM423178 ,
GSM423179 ,
GSM423180 ,
GSM423181 ,
GSM423182 ,
GSM423183 ,
GSM423184 ,
GSM423185 ,
GSM423186 ,
GSM423187 ,
GSM423188 ,
GSM423189 ,
GSM423190 ,
GSM423191 ,
GSM423192 ,
GSM423193 ,
GSM423194 ,
GSM423195 ,
GSM423196 ,
GSM423197 ,
GSM423198 ,
GSM423199 ,
GSM423200 ,
GSM423201 ,
GSM423202 ,
GSM423203 ,
GSM423204 ,
GSM423205 ,
GSM423206 ,
GSM423207 ,
GSM423208 ,
GSM423209 ,
GSM423210 ,
GSM423211 ,
GSM423212 ,
GSM423213 ,
GSM423214 ,
GSM423215 ,
GSM423216 ,
GSM423217 ,
GSM423218 ,
GSM423219 ,
GSM423220 ,
GSM423221 ,
GSM423222 ,
GSM423223 ,
GSM423224 ,
GSM423225 ,
GSM423226 ,
GSM423227 ,
GSM423228 ,
GSM423229 ,
GSM423230 ,
GSM423231 ,
GSM423232 ,
GSM423233 ,
GSM423234 ,
GSM423235 ,
GSM423236 ,
GSM423237 ,
GSM423238 ,
GSM423239 ,
GSM423240 ,
GSM423241 ,
GSM423242 ,
GSM423243 ,
GSM423244 ,
GSM423245 ,
GSM423246 ,
GSM423247 ,
GSM423248 ,
GSM423249 ,
GSM423250 ,
GSM423251 ,
GSM423252 ,
GSM423253 ,
GSM423254 ,
GSM423255 ,
GSM423256 ,
GSM423257 ,
GSM423258 ,
GSM423259 ,
GSM423260 ,
GSM423261 ,
GSM423262 ,
GSM423263 ,
GSM423264 ,
GSM423265 ,
GSM423266 ,
GSM423267 ,
GSM423268 ,
GSM423269 ,
GSM423270 ,
GSM423271 ,
GSM423272 ,
GSM423273 ,
GSM423274 ,
GSM423275 ,
GSM423276 ,
GSM423277 ,
GSM423278 ,
GSM423279 ,
GSM423280 ,
GSM423281 ,
GSM423282 ,
GSM423283
Series (1)
GSE16881
Use of toxicogenomics for screening of estrogenic activity
Data table header descriptions
ID
GENE_NAME
Gene name
TARGET_ID
Spot identifier
GENE_SYMBOL
Gene symbol
ACCESSION
Accession string
DESCRIPTION
Description
GB_ACC
Representative GenBank Accession number
SPOT_ID
Data table
ID
GENE_NAME
TARGET_ID
GENE_SYMBOL
ACCESSION
DESCRIPTION
GB_ACC
SPOT_ID
A_24_P244944
MCTP2
NM_018349
multiple C2-domains with two transmembrane regions 2
ref|NM_018349|ens|ENST00000310362|gb|AK090622|gb|AX746539
Homo sapiens multiple C2-domains with two transmembrane regions 2 (MCTP2), mRNA [NM_018349]
NM_018349
A_23_P85811
MCL1
NM_021960
myeloid cell leukemia sequence 1 (BCL2-related)
ref|NM_021960|ref|NM_182763|ens|ENST00000271648|ens|ENST00000307940
Homo sapiens myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), transcript variant 1, mRNA [NM_021960]
NM_021960
A_23_P153185
ENST00000299502
ENST00000299502
ENST00000299502
ens|ENST00000299502|gb|BC012609|gb|CR599277|gb|CR616092
Homo sapiens serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2, mRNA (cDNA clone MGC:13616 IMAGE:4281085), complete cds. [BC012609]
Ensembl Transcript: ENST00000299502
A_23_P255984
ACOX3
NM_003501
acyl-Coenzyme A oxidase 3, pristanoyl
ref|NM_003501|gb|BC017053|ens|ENST00000356406|ens|ENST00000200383
Homo sapiens acyl-Coenzyme A oxidase 3, pristanoyl (ACOX3), mRNA [NM_003501]
NM_003501
A_23_P218997
PDCD6
NM_013232
programmed cell death 6
ref|NM_013232|gb|AK128087|ens|ENST00000264933|gb|U58773
Homo sapiens programmed cell death 6 (PDCD6), mRNA [NM_013232]
NM_013232
A_23_P79703
HADHB
NM_000183
hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit
ref|NM_000183|ens|ENST00000317799|ens|ENST00000317815|gb|BC066963
Homo sapiens hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (HADHB), mRNA [NM_000183]
NM_000183
A_23_P2355
CBX5
NM_012117
chromobox homolog 5 (HP1 alpha homolog, Drosophila)
ref|NM_012117|gb|CR605673|ens|ENST00000360257|ens|ENST00000209875
Homo sapiens chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5), mRNA [NM_012117]
NM_012117
A_23_P215245
ACHE
NM_015831
acetylcholinesterase (YT blood group)
ref|NM_015831|ens|ENST00000302913|thc|THC2241649
Homo sapiens acetylcholinesterase (YT blood group) (ACHE), transcript variant E4-E5, mRNA [NM_015831]
NM_015831
A_32_P82189
ENST00000307507
ENST00000307507
ENST00000307507
ens|ENST00000307507|gb|AK023367|gb|BX649029|gb|BC036448
Homo sapiens cDNA FLJ13305 fis, clone OVARC1001399. [AK023367]
Ensembl Transcript: ENST00000307507
A_23_P104073
S100A3
NM_002960
S100 calcium binding protein A3
ref|NM_002960|ens|ENST00000340845|gb|Z18948|gb|BC012893
Homo sapiens S100 calcium binding protein A3 (S100A3), mRNA [NM_002960]
NM_002960
A_23_P204277
H2AFJ
NM_177925
H2A histone family, member J
ref|NM_177925|gb|CR625218|gb|BC003602|thc|THC2257228
Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, mRNA [NM_177925]
NM_177925
A_24_P21770
YPEL4
NM_145008
yippee-like 4 (Drosophila)
ref|NM_145008|gb|BC029228|ens|ENST00000300022|gb|AK124577
Homo sapiens yippee-like 4 (Drosophila) (YPEL4), mRNA [NM_145008]
NM_145008
A_23_P201066
SUSD4
NM_017982
sushi domain containing 4
ref|NM_017982|gb|BC004888|ens|ENST00000271787|ens|ENST00000343846
Homo sapiens sushi domain containing 4 (SUSD4), mRNA [NM_017982]
NM_017982
A_23_P103201
PNRC2
NM_017761
proline-rich nuclear receptor coactivator 2
ref|NM_017761|gb|BC085018|ens|ENST00000341532|ens|ENST00000334351
Homo sapiens proline-rich nuclear receptor coactivator 2 (PNRC2), mRNA [NM_017761]
NM_017761
A_23_P170096
ALK
D45915
anaplastic lymphoma kinase (Ki-1)
gb|D45915|gb|U66559|gb|AB209477|thc|THC2251761
Human mRNA for p80 protein, complete cds. [D45915]
D45915
A_23_P75008
GAD2
NM_000818
glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)
ref|NM_000818|ens|ENST00000259271|gb|M74826|thc|THC2406982
Homo sapiens glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) (GAD2), mRNA [NM_000818]
NM_000818
A_23_P374129
DRD5
NM_000798
dopamine receptor D5
ref|NM_000798|ens|ENST00000304374|gb|BC009748|thc|THC2261076
Homo sapiens dopamine receptor D5 (DRD5), mRNA [NM_000798]
NM_000798
A_23_P117225
ERCC5
NM_000123
excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome))
ref|NM_000123|gb|BC031522|ens|ENST00000355739|gb|D16305
Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome)) (ERCC5), mRNA [NM_000123]
NM_000123
A_23_P55926
NR1H2
NM_007121
nuclear receptor subfamily 1, group H, member 2
ref|NM_007121|ens|ENST00000253727|gb|CR456706|gb|CR598124
Homo sapiens nuclear receptor subfamily 1, group H, member 2 (NR1H2), mRNA [NM_007121]
NM_007121
A_23_P78585
CYP2F1
NM_000774
cytochrome P450, family 2, subfamily F, polypeptide 1
ref|NM_000774|gb|J02906|ens|ENST00000331105|gb|BE734771
Homo sapiens cytochrome P450, family 2, subfamily F, polypeptide 1 (CYP2F1), mRNA [NM_000774]
NM_000774
Total number of rows: 5114 Table truncated, full table size 1124 Kbytes .
Supplementary data files not provided