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Platform GPL8637 Query DataSets for GPL8637
Status Public on Oct 01, 2015
Title Agilent_custom_Human_MCF7_10K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/
Support glass
Coating unknown
 
Description A custom array containing 60-mer oligonucleotides to monitor 5,114 well characterized human transcripts that are chemically responsive in the MCF7 breast cancer cell line.
 
Contributor(s) Vanparys C, Maras M, Van Leemput K, van der Ven K, Allemeersch J, Del Favero J, Van Hummelen P, Blust R, De Coen W
Submission date Jun 03, 2009
Last update date Oct 01, 2015
Contact name Rekin's Janky
E-mail(s) Nucleomics.Bioinformatics@vib.be
Organization name VIB
Department Nucleomics Core
Street address Herestraat 49 Box 816
City Leuven
ZIP/Postal code B-3000
Country Belgium
 
Samples (183) GSM423101, GSM423102, GSM423103, GSM423104, GSM423105, GSM423106 
Series (1)
GSE16881 Use of toxicogenomics for screening of estrogenic activity

Data table header descriptions
ID
GENE_NAME Gene name
TARGET_ID Spot identifier
GENE_SYMBOL Gene symbol
ACCESSION Accession string
DESCRIPTION Description
GB_ACC Representative GenBank Accession number
SPOT_ID

Data table
ID GENE_NAME TARGET_ID GENE_SYMBOL ACCESSION DESCRIPTION GB_ACC SPOT_ID
A_24_P244944 MCTP2 NM_018349 multiple C2-domains with two transmembrane regions 2 ref|NM_018349|ens|ENST00000310362|gb|AK090622|gb|AX746539 Homo sapiens multiple C2-domains with two transmembrane regions 2 (MCTP2), mRNA [NM_018349] NM_018349
A_23_P85811 MCL1 NM_021960 myeloid cell leukemia sequence 1 (BCL2-related) ref|NM_021960|ref|NM_182763|ens|ENST00000271648|ens|ENST00000307940 Homo sapiens myeloid cell leukemia sequence 1 (BCL2-related) (MCL1), transcript variant 1, mRNA [NM_021960] NM_021960
A_23_P153185 ENST00000299502 ENST00000299502 ENST00000299502 ens|ENST00000299502|gb|BC012609|gb|CR599277|gb|CR616092 Homo sapiens serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2, mRNA (cDNA clone MGC:13616 IMAGE:4281085), complete cds. [BC012609] Ensembl Transcript: ENST00000299502
A_23_P255984 ACOX3 NM_003501 acyl-Coenzyme A oxidase 3, pristanoyl ref|NM_003501|gb|BC017053|ens|ENST00000356406|ens|ENST00000200383 Homo sapiens acyl-Coenzyme A oxidase 3, pristanoyl (ACOX3), mRNA [NM_003501] NM_003501
A_23_P218997 PDCD6 NM_013232 programmed cell death 6 ref|NM_013232|gb|AK128087|ens|ENST00000264933|gb|U58773 Homo sapiens programmed cell death 6 (PDCD6), mRNA [NM_013232] NM_013232
A_23_P79703 HADHB NM_000183 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit ref|NM_000183|ens|ENST00000317799|ens|ENST00000317815|gb|BC066963 Homo sapiens hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit (HADHB), mRNA [NM_000183] NM_000183
A_23_P2355 CBX5 NM_012117 chromobox homolog 5 (HP1 alpha homolog, Drosophila) ref|NM_012117|gb|CR605673|ens|ENST00000360257|ens|ENST00000209875 Homo sapiens chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5), mRNA [NM_012117] NM_012117
A_23_P215245 ACHE NM_015831 acetylcholinesterase (YT blood group) ref|NM_015831|ens|ENST00000302913|thc|THC2241649 Homo sapiens acetylcholinesterase (YT blood group) (ACHE), transcript variant E4-E5, mRNA [NM_015831] NM_015831
A_32_P82189 ENST00000307507 ENST00000307507 ENST00000307507 ens|ENST00000307507|gb|AK023367|gb|BX649029|gb|BC036448 Homo sapiens cDNA FLJ13305 fis, clone OVARC1001399. [AK023367] Ensembl Transcript: ENST00000307507
A_23_P104073 S100A3 NM_002960 S100 calcium binding protein A3 ref|NM_002960|ens|ENST00000340845|gb|Z18948|gb|BC012893 Homo sapiens S100 calcium binding protein A3 (S100A3), mRNA [NM_002960] NM_002960
A_23_P204277 H2AFJ NM_177925 H2A histone family, member J ref|NM_177925|gb|CR625218|gb|BC003602|thc|THC2257228 Homo sapiens H2A histone family, member J (H2AFJ), transcript variant 2, mRNA [NM_177925] NM_177925
A_24_P21770 YPEL4 NM_145008 yippee-like 4 (Drosophila) ref|NM_145008|gb|BC029228|ens|ENST00000300022|gb|AK124577 Homo sapiens yippee-like 4 (Drosophila) (YPEL4), mRNA [NM_145008] NM_145008
A_23_P201066 SUSD4 NM_017982 sushi domain containing 4 ref|NM_017982|gb|BC004888|ens|ENST00000271787|ens|ENST00000343846 Homo sapiens sushi domain containing 4 (SUSD4), mRNA [NM_017982] NM_017982
A_23_P103201 PNRC2 NM_017761 proline-rich nuclear receptor coactivator 2 ref|NM_017761|gb|BC085018|ens|ENST00000341532|ens|ENST00000334351 Homo sapiens proline-rich nuclear receptor coactivator 2 (PNRC2), mRNA [NM_017761] NM_017761
A_23_P170096 ALK D45915 anaplastic lymphoma kinase (Ki-1) gb|D45915|gb|U66559|gb|AB209477|thc|THC2251761 Human mRNA for p80 protein, complete cds. [D45915] D45915
A_23_P75008 GAD2 NM_000818 glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) ref|NM_000818|ens|ENST00000259271|gb|M74826|thc|THC2406982 Homo sapiens glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa) (GAD2), mRNA [NM_000818] NM_000818
A_23_P374129 DRD5 NM_000798 dopamine receptor D5 ref|NM_000798|ens|ENST00000304374|gb|BC009748|thc|THC2261076 Homo sapiens dopamine receptor D5 (DRD5), mRNA [NM_000798] NM_000798
A_23_P117225 ERCC5 NM_000123 excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome)) ref|NM_000123|gb|BC031522|ens|ENST00000355739|gb|D16305 Homo sapiens excision repair cross-complementing rodent repair deficiency, complementation group 5 (xeroderma pigmentosum, complementation group G (Cockayne syndrome)) (ERCC5), mRNA [NM_000123] NM_000123
A_23_P55926 NR1H2 NM_007121 nuclear receptor subfamily 1, group H, member 2 ref|NM_007121|ens|ENST00000253727|gb|CR456706|gb|CR598124 Homo sapiens nuclear receptor subfamily 1, group H, member 2 (NR1H2), mRNA [NM_007121] NM_007121
A_23_P78585 CYP2F1 NM_000774 cytochrome P450, family 2, subfamily F, polypeptide 1 ref|NM_000774|gb|J02906|ens|ENST00000331105|gb|BE734771 Homo sapiens cytochrome P450, family 2, subfamily F, polypeptide 1 (CYP2F1), mRNA [NM_000774] NM_000774

Total number of rows: 5114

Table truncated, full table size 1124 Kbytes.




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