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Platform GPL8640 Query DataSets for GPL8640
Status Public on Dec 31, 2009
Title OGF MWG human 20K print-122
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Otago Genomics Facility, University of Otago, Dunedin, New Zealand
Manufacture protocol The oligos on this array are the commercial MWG Biotech human 50-mer 20K set (now owned by Ocimum Biosolutions). Five uL of oligo in 1 x MWG Spotting buffer A (cat no 1190-100100) was transferred from 96-well source plates to each well of a Whatman polypropylene 384 well V-bottom well printing plate (cat no. 7701_5101). Oligos were printed at a concentration of 35uM.
Oligos were printed onto epoxy coated slides (Schott Nexterion slide E Cat no 1064016) by using an ESI SDDC-2 arrayer with Stealth SMP3 pins (Arraylt). Printing was carried out at room Temperature (18-25C) with humidity maintained at around 55%.
Between print runs, plates were dried at 37C, then stored at 4dC. Before re-use, the appropriate volume of MilliQ water was added to each well, and the dried oligo/buffer was re-dissolved overnight (the intial 5 uL volume was sequentially decreased by 0.25 uL/print to allow for the volume removed by printing). Plates were centrifuged briefly before printing.
 
 
Submission date Jun 03, 2009
Last update date Dec 31, 2009
Contact name Aaron Jeffs
E-mail(s) aaron.jeffs@otago.ac.nz
Organization name University of Otago
Street address PO Box 56
City Dunedin
ZIP/Postal code 9054
Country New Zealand
 
Samples (34) GSM412141, GSM412142, GSM412143, GSM412144, GSM412145, GSM412146 
Series (1)
GSE16404 Gene expression profilling of metastatic melanoma cell lines

Data table header descriptions
ID
GB_ACC GenBank accession number of sequence used to design oligonucleotide probe
OLIGO_NAME Unique MWG Biotech oligonucleotide identifier
GENE_SYMBOL Gene Symbol
DESCRIPTION Gene description
SPOT_ID

Data table
ID GB_ACC OLIGO_NAME GENE_SYMBOL DESCRIPTION SPOT_ID
1 AB000732.1 obshum40K:A#08362 IRS2 insulin receptor substrate 2
2 AB000813.1 obshum40K:A#42206 ARNTL aryl hydrocarbon receptor nuclear translocator-like
3 AB000815.1 obshum40K:A#42696 ARNTL aryl hydrocarbon receptor nuclear translocator-like
4 AB001914.2 obshum40K:A#14876 PCSK6 proprotein convertase subtilisin/kexin type 6
5 AB002311.1 obshum40K:A#08188 RAPGEF2 Rap guanine nucleotide exchange factor (GEF) 2
6 AB002378.1 obshum40K:A#14840 ARHGEF11 Rho guanine nucleotide exchange factor (GEF) 11
7 AB004064.1 obshum40K:A#13907 TMEFF2 transmembrane protein with EGF-like and two follistatin-like domains 2
8 AB006629.2 obshum40K:A#08668 CYLN2 cytoplasmic linker 2
9 AB007296.1 obshum40K:A#41498 GLI2 GLI-Kruppel family member GLI2
10 AB007456.1 obshum40K:A#13717 TP53AP1 TP53 activated protein 1
11 AB007875.1 obshum40K:A#22707 KIAA0415 KIAA0415 protein
12 AB007880.2 obshum40K:A#14785 SEC14L5 SEC14-like 5 (S. cerevisiae)
13 AB007895.1 obshum40K:A#05243 PCNXL2 pecanex-like 2 (Drosophila)
14 AB007921.1 obshum40K:A#14614 C1orf34 chromosome 1 open reading frame 34
15 AB007928.2 obshum40K:A#30642 OTUD3 OTU domain containing 3
16 AB007930.1 obshum40K:A#14097 POGZ pogo transposable element with ZNF domain
17 AB007940.1 obshum40K:A#00755 RABGAP1L RAB GTPase activating protein 1-like
18 AB009426.2 obshum40K:A#01506 APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
19 AB009426.2 obshum40K:A#01506 APOBEC1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
20 AB011114.2 obshum40K:A#10116 SFI1 Sfi1 homolog, spindle assembly associated (yeast)

Total number of rows: 20736

Table truncated, full table size 1770 Kbytes.




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