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Status |
Public on Jan 23, 2010 |
Title |
Lewis-Sigler Institute Saccharomyces 13K [20070907MD_PMC] |
Technology type |
spotted oligonucleotide |
Distribution |
non-commercial |
Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
Manufacturer |
Lewis-Sigler Institute Microarray Facility |
Manufacture protocol |
The following parameters were used to manufacture the printed array named 20070907MD_PMC Printer: Arrayer 250A Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip Spot Columns per Sector: 16 Spot Rows per Sector: 16 Column Spacing: 235 Row Spacing: 240 Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right) Printhead Dip Dynamics: top to bottom, right to left Sector Spotting Dynamics: left to right, top to bottom Number of Slides: 250 Plates used in this print, in order. PLATEID PLATENAME PLATE_VISITS IS_FLIPPED 100700 SBSC_SONIC_1 100522 HYBRIDSC_10 100527 HYBRIDSC_15 100528 HYBRIDSC_16 100507 HYBRIDSB_8 100502 HYBRIDSB_3 100514 HYBRIDSC_2 100525 HYBRIDSC_13 100511 HYBRIDSB_12 100500 HYBRIDSB_1 100529 HYBRIDSC_17 100509 HYBRIDSB_10 100518 HYBRIDSC_6 100520 HYBRIDSC_8 100524 HYBRIDSC_12 100519 HYBRIDSC_7 100513 HYBRIDSC_1 100516 HYBRIDSC_4 100515 HYBRIDSC_3 100512 HYBRIDSB_13 100517 HYBRIDSC_5 100508 HYBRIDSB_9 100505 HYBRIDSB_6 100504 HYBRIDSB_5 100510 HYBRIDSB_11 100526 HYBRIDSC_14 100503 HYBRIDSB_4 100501 HYBRIDSB_2 100521 HYBRIDSC_9 100506 HYBRIDSB_7 100523 HYBRIDSC_11 100700 SBSC_SONIC_1
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Description |
SBSC multi-organism print
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Submission date |
Jun 05, 2009 |
Last update date |
Jan 23, 2010 |
Contact name |
Maitreya J. Dunham |
E-mail(s) |
maitreya@uw.edu
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Phone |
206-543-2338
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Organization name |
University of Washington
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Department |
Genome Sciences
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Lab |
Dunham Lab
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Street address |
Foege Building, S403B, Box 355065
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City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98195-5065 |
Country |
USA |
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Samples (23)
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GSM415472, GSM415493, GSM415494, GSM415495, GSM415496, GSM415497
GSM415498, GSM415499, GSM415500, GSM415501, GSM415502, GSM415503, GSM415532, GSM415533, GSM415670, GSM415671, GSM415672, GSM415673, GSM415674, GSM415675, GSM415676, GSM415677, GSM415678
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Series (2) |
GSE16544 |
Systematic planning of genome-scale experiments in poorly studied species. |
GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
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Data table header descriptions |
ID |
feature/spot number |
ORF |
S. cerevisiae locus tag |
Sbayanus_ORF |
ORF name from S. bayanus joint assembly available at: http://downloads.yeastgenome.org/sequence/fungal_genomes/S_bayanus/WashU/ |
ORGANISM |
the organism of the spotted sequence |
SEQUENCE |
oligonucleotide sequence |
SPOT_ID |
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Data table |
ID |
ORF |
Sbayanus_ORF |
ORGANISM |
SEQUENCE |
SPOT_ID |
1 |
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--SBSC_SONIC_GENOMIC |
2 |
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--SBSC_SONIC_GENOMIC |
3 |
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--SBSC_SONIC_GENOMIC |
4 |
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--SBSC_SONIC_GENOMIC |
5 |
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--SBSC_SONIC_GENOMIC |
6 |
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--SBSC_SONIC_GENOMIC |
7 |
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--SBSC_SONIC_GENOMIC |
8 |
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--SBSC_SONIC_GENOMIC |
9 |
YLL056C |
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Saccharomyces cerevisiae |
GCAAGAATTGTCAGACTCCCATTCTCGGTTCATGGCAAGGGGGACAAGGCTTTTGTACCAATATTAATGA |
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10 |
YKL146W |
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Saccharomyces cerevisiae |
GTCGCACACTTCCTGTAACAATGGCACGCTTGAAGTGAGCATAAATAACCCTGAGCCACATGTGGTAGAT |
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11 |
YGL103W |
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Saccharomyces cerevisiae |
TCCAGATTCACTAAGACTAGAAAGCACAGAGGTCACGTCTCAGCCGGTAAAGGTCGTATCGGTAAGCACA |
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12 |
YOL012C |
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Saccharomyces cerevisiae |
TTCCTGTCGGTAGGATTAAGCGTTACCTGAAAAGGCACGCTACCGGCCGAACAAGAGTAGGATCCAAAGC |
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13 |
YMR110C |
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Saccharomyces cerevisiae |
AAGCTTTGATGAACAAACAGATTTCACTCGTATGATTCATGAGCCTGCTTACAAAAAGGCCGTTGCAAGT |
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14 |
YGL022W |
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Saccharomyces cerevisiae |
GACATCAGAAACGTTTGTGTGCTATTTGCGCCACTATTTTCTGGGGTCACCGCCTGGGCGACTTACGAAT |
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15 |
YDR067C |
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Saccharomyces cerevisiae |
ACTGTACAGCCAAATTTATATAGAGGATCTTACCCACGAGAAATCAATCTCCCATTCCTGAGAACCCTTA |
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16 |
YBR046C |
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Saccharomyces cerevisiae |
AGTTGAACATCAAAATATACAAAACTTATCCATTACGGGATTATAGAACTGCAGCTGCTGACATAGAAAG |
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17 |
YAL031C |
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Saccharomyces cerevisiae |
ATAATTTGTGAGCTGATGGCTTTGCTCTCTCCAGAATGTGATGATGTCACAGCTTTATTCGAACTGCAGG |
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18 |
YPL158C |
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Saccharomyces cerevisiae |
TTTTCATATAATGTTCAAAAGGTCCCCTCCGCCACGAATTCCAAAACCACTAAATCTAAAGCAAACATTA |
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19 |
YBL103C |
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Saccharomyces cerevisiae |
CACTATGGAGAGTCATCCACATACAAACATTCATGAAGAATTAAAGGAGTTCTTATCAGGCGATTTGATT |
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20 |
YLL020C |
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Saccharomyces cerevisiae |
AATACCCAAGGATAGTGGGTGTTCTCGTTCTACTTTTCTCTTCTTTTTTTCACATCTTTTACTAGTTCCG |
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Total number of rows: 12288
Table truncated, full table size 1255 Kbytes.
Supplementary data files not provided |
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