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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 23, 2010 |
| Title |
Lewis-Sigler Institute Saccharomyces 13K [20070907MD_PMC] |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named 20070907MD_PMC
Printer: Arrayer 250A
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 16
Spot Rows per Sector: 16
Column Spacing: 235
Row Spacing: 240
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 250
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100700 SBSC_SONIC_1
100522 HYBRIDSC_10
100527 HYBRIDSC_15
100528 HYBRIDSC_16
100507 HYBRIDSB_8
100502 HYBRIDSB_3
100514 HYBRIDSC_2
100525 HYBRIDSC_13
100511 HYBRIDSB_12
100500 HYBRIDSB_1
100529 HYBRIDSC_17
100509 HYBRIDSB_10
100518 HYBRIDSC_6
100520 HYBRIDSC_8
100524 HYBRIDSC_12
100519 HYBRIDSC_7
100513 HYBRIDSC_1
100516 HYBRIDSC_4
100515 HYBRIDSC_3
100512 HYBRIDSB_13
100517 HYBRIDSC_5
100508 HYBRIDSB_9
100505 HYBRIDSB_6
100504 HYBRIDSB_5
100510 HYBRIDSB_11
100526 HYBRIDSC_14
100503 HYBRIDSB_4
100501 HYBRIDSB_2
100521 HYBRIDSC_9
100506 HYBRIDSB_7
100523 HYBRIDSC_11
100700 SBSC_SONIC_1
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| Description |
SBSC multi-organism print
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| Submission date |
Jun 05, 2009 |
| Last update date |
Jan 23, 2010 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
|
| Phone |
206-543-2338
|
| Organization name |
University of Washington
|
| Department |
Genome Sciences
|
| Lab |
Dunham Lab
|
| Street address |
Foege Building, S403B, Box 355065
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (23)
|
GSM415472, GSM415493, GSM415494, GSM415495, GSM415496, GSM415497
GSM415498, GSM415499, GSM415500, GSM415501, GSM415502, GSM415503, GSM415532, GSM415533, GSM415670, GSM415671, GSM415672, GSM415673, GSM415674, GSM415675, GSM415676, GSM415677, GSM415678
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| Series (2) |
| GSE16544 |
Systematic planning of genome-scale experiments in poorly studied species. |
| GSE47613 |
A New System for Comparative Functional Genomics of Saccharomyces Yeasts |
|
| Data table header descriptions |
| ID |
feature/spot number |
| ORF |
S. cerevisiae locus tag |
| Sbayanus_ORF |
ORF name from S. bayanus joint assembly available at: http://downloads.yeastgenome.org/sequence/fungal_genomes/S_bayanus/WashU/ |
| ORGANISM |
the organism of the spotted sequence |
| SEQUENCE |
oligonucleotide sequence |
| SPOT_ID |
|
| Data table |
| ID |
ORF |
Sbayanus_ORF |
ORGANISM |
SEQUENCE |
SPOT_ID |
| 1 |
|
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--SBSC_SONIC_GENOMIC |
| 2 |
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|
--SBSC_SONIC_GENOMIC |
| 3 |
|
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|
|
--SBSC_SONIC_GENOMIC |
| 4 |
|
|
|
|
--SBSC_SONIC_GENOMIC |
| 5 |
|
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|
--SBSC_SONIC_GENOMIC |
| 6 |
|
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|
|
--SBSC_SONIC_GENOMIC |
| 7 |
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--SBSC_SONIC_GENOMIC |
| 8 |
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--SBSC_SONIC_GENOMIC |
| 9 |
YLL056C |
|
Saccharomyces cerevisiae |
GCAAGAATTGTCAGACTCCCATTCTCGGTTCATGGCAAGGGGGACAAGGCTTTTGTACCAATATTAATGA |
|
| 10 |
YKL146W |
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Saccharomyces cerevisiae |
GTCGCACACTTCCTGTAACAATGGCACGCTTGAAGTGAGCATAAATAACCCTGAGCCACATGTGGTAGAT |
|
| 11 |
YGL103W |
|
Saccharomyces cerevisiae |
TCCAGATTCACTAAGACTAGAAAGCACAGAGGTCACGTCTCAGCCGGTAAAGGTCGTATCGGTAAGCACA |
|
| 12 |
YOL012C |
|
Saccharomyces cerevisiae |
TTCCTGTCGGTAGGATTAAGCGTTACCTGAAAAGGCACGCTACCGGCCGAACAAGAGTAGGATCCAAAGC |
|
| 13 |
YMR110C |
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Saccharomyces cerevisiae |
AAGCTTTGATGAACAAACAGATTTCACTCGTATGATTCATGAGCCTGCTTACAAAAAGGCCGTTGCAAGT |
|
| 14 |
YGL022W |
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Saccharomyces cerevisiae |
GACATCAGAAACGTTTGTGTGCTATTTGCGCCACTATTTTCTGGGGTCACCGCCTGGGCGACTTACGAAT |
|
| 15 |
YDR067C |
|
Saccharomyces cerevisiae |
ACTGTACAGCCAAATTTATATAGAGGATCTTACCCACGAGAAATCAATCTCCCATTCCTGAGAACCCTTA |
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| 16 |
YBR046C |
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Saccharomyces cerevisiae |
AGTTGAACATCAAAATATACAAAACTTATCCATTACGGGATTATAGAACTGCAGCTGCTGACATAGAAAG |
|
| 17 |
YAL031C |
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Saccharomyces cerevisiae |
ATAATTTGTGAGCTGATGGCTTTGCTCTCTCCAGAATGTGATGATGTCACAGCTTTATTCGAACTGCAGG |
|
| 18 |
YPL158C |
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Saccharomyces cerevisiae |
TTTTCATATAATGTTCAAAAGGTCCCCTCCGCCACGAATTCCAAAACCACTAAATCTAAAGCAAACATTA |
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| 19 |
YBL103C |
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Saccharomyces cerevisiae |
CACTATGGAGAGTCATCCACATACAAACATTCATGAAGAATTAAAGGAGTTCTTATCAGGCGATTTGATT |
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| 20 |
YLL020C |
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Saccharomyces cerevisiae |
AATACCCAAGGATAGTGGGTGTTCTCGTTCTACTTTTCTCTTCTTTTTTTCACATCTTTTACTAGTTCCG |
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Total number of rows: 12288
Table truncated, full table size 1255 Kbytes.
| Supplementary data files not provided |
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