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Platform GPL8849 Query DataSets for GPL8849
Status Public on Jul 18, 2009
Title IFR_Salmonella_5.3k_v1.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Salmonella enterica
Manufacturer Institute of Food Research, Norwich, UK
Manufacture protocol PCR product array of whole ORF's from S. Typhimurium LT2. For description of PCR amplification and printing procedures see Eriksson et al., Molecular Microbiology(2003) 47(1): 103-118.
Support glass
Coating aminosilane
 
 
Contributor(s) Lucchini S, Thompson A, Hinton JC
Submission date Jul 13, 2009
Last update date Jul 18, 2009
Contact name Sacha Lucchini
E-mail(s) sacha.lucchini@bbsrc.ac.uk
Organization name Institute of Food Research
Department Molecular Microbiology
Street address Colney Lane
City Norwich
ZIP/Postal code NR4 7UA
Country United Kingdom
 
Samples (21) GSM427233, GSM431427, GSM431474, GSM431491, GSM431492, GSM431493 
Series (1)
GSE17246 The transcriptional programme of Salmonella Typhimurium reveals a key role for tryptophan metabolism in biofilms

Data table header descriptions
ID
METAROW
METACOLUMN
ROW
COLUMN
ORF
SYNONYM
SEQUENCE
SPOT_ID

Data table
ID METAROW METACOLUMN ROW COLUMN ORF SYNONYM SEQUENCE SPOT_ID
1 1 1 1 1 STM4029 yiiD TCCTAGGAGCTCTTCTATGGTGGTGGACGAAGAAGGAAATTTAGTTGCAGTGGGCCGCCTTTATATCAATGCAGATAACGAGGCGTCTATCCGTTTTATGGCTGTACATCCCTCGGTACAGGATAAAGGGCTGGGGACATTAATGGCGATGACCCTGGAGTCTGTTGCCCGCCAGGAAGGCGTTAAGCGCGTCACCTGCAGTGCGCGCGAAGATGCGGTTGAGTTCTTTGCCAAACTCGGGTTTGTCAATCAGGG
2 1 1 1 2 STM4532 yjiY TCCTAGGAGCTCTTCTTCCGTCTATCTGGTGGCTTACCGCTACTACAGCCTGTACATCGCCCAGAAGGTCATGAAACTCGACCCGACGCGCGCGACGCCGGCGGTTATCAATAACGACGGCCTGAACTACGTGCCGACTAACCGCTACGTGCTGTTTGGTCACCACTTCGCCGCCATCGCTGGCGCAGGTCCGCTGGTCGGGCCGGTATTGGCCGCGCAGATGGGCTATCTGCCGGGGACACTGTGGTTACTGGC
3 1 1 1 3 STM3524 glpG TCCTAGGAGCTCTTCTACCCAGGGCGTCATTCTTACTATTCAGCAACATAATCAAAGCGATATCTGGTTGGCAGATGAATCGCAGGCCGAACGTGTGCGGGGCGAGCTGGCGCGGTTTATAGAAAATCCCGGCGATCCGCGTTATCTGGCGGCTAGCTGGCAGTCCGGGCAGACTAACAGCGGGCTACGCTATCGCCGTTTTCCCTTTCTCGCCACGCTGCGTGAACGAGCCGGCCCTGTTACCTGGATCGTGAT
4 1 1 1 4 STM3607 yhjC TCCTAGGAGCTCTTCTTTCCCAAAGGCAGCGTCTCACGGCAAATACAAGCGTTAGAACATCAACTGGGCATCCGCCTGCTCCACCGCACCACCCGGCGGGTACAGCTTACTCAGGACGGAATGGTTTACTACGAACGGGCAAAAGATCTGTTGAGTAACCTGGATGAACTGGAGGGTCTTTTCCAGCCTGATCCCGCCAGTATCAGTGGCAAAATACGGGTAGATATACCGCCATGTCTCGCAAACAGCCTCATC
5 1 1 1 5 STM3300 dacB TCCTAGGAGCTCTTCTGACCACCAGTATAGCGTTCAGCGTTCAGGCCGCGAATATTGACGAATACATCAAACAGCTTCCGGCCGGCGCCAACCTCGCGCTGATGGTGCAAAAGATTGGCGCGCCCGCGCCGGCTATTGATTATCATAGTCAGCAGATGGCGCTTCCCGCCAGTACCCAAAAGGTGATTACCGCGCTGGCGGCGCTGATTCAACTCGGCCCGGATTTCCGTTTTACGACCACGCTGGAGACTAAAG
6 1 1 1 6 STM3229 yqjD TCCTAGGAGCTCTTCTACCGATACGCTTGAAGAAGTGCTGAGCTCTTCGGGCGAAAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCCGAGCGCGCGCTGAAAGAGAGCCGTTACCGCCTGGGCGAAACGGGTGATGTGATTGCCAAACAGACTCGCGTCGCCGCCGCCCGCGCCGATGATTATGTGCGCGAAAATCCCTGGACAGGCGTAGGCATTCGAAGAGCCCTAGGCA
7 1 1 1 7 STM2544 yfhP TCCTAGGAGCTCTTCTGAGACTGACATCTAAAGGGCGTTATGCCGTGACCGCAATGTTAGACGTTGCGCTCAACTCCGAAGCGGGCCCGGTACCGTTGGCTGATATTTCTGAACGTCAGGGGATTTCCCTTTCTTATCTGGAACAGCTATTTTCCCGTTTACGTAAAAACGGTCTGGTTTCCAGCGTACGCGGGCCGGGCGGCGGTTATCTGCTGGGTAAAGATGCTGGCAGTATCGCGGTCGGCGAAGTGATCA
8 1 1 1 8 STM0660 TCCTAGGAGCTCTTCTAGTGGAATCAGCCAGGAGTCGGGTTGAACGAAGCATTTACCGCCCTGACGCCGCTGTTTTCACTCTTTGCCGATGGCTATTACCGACTGGAGGAACGCGAACTTTATCCCACAGATGGCAACGGACATTTTTTCTGGGCGGTGGGTAACGAAAAACAACCGAATCCCGCGACCACAGGGCAGTGGATTGCTGACGTGGACTATCACTACCAGTCCGGCGAACCCTGTTTTTTACTGCCA
9 1 1 1 9 STM0672 TCCTAGGAGCTCTTCTTTATGGTCGTCTTGCTCTGCGCTTTCACCTTCATTGATATCACGGCCAGCGCCGCCTGGTTGATTATTTTGGGTCTGGTTTACCCCGTGGCAGTGTCAATGAGGCTACATATACTGCACCAGAAAAAGGCCGTCATGTTGCGCCAGAATAGTGCGGAATGGATAGTGTATCTGCCAGGGATCCCTGTGCAAGAAAAACAAAGCGCGCTGATTAATGTCGCGTTTTCCTCGAAAACGGCG
10 1 1 1 10 STM0684 nagB TCCTAGGAGCTCTTCTTTGTCCTTGGACTGCCTACCGGCGGCACGCCGCTAACGGCGTACAAAGCGCTGGTTGAGATGCACAAAGCGGGCGAGGTCAGCTTTAAGCATGTGGTCACCTTTAATATGGACGAATATGTTGGCCTGCCGAAAGAGCATCCGGAAAGCTACCACAGCTTTATGCATCGTAACTTTTTCGATCACGTTGATATTCCAGCAGAAAACATCAATCTTCTCAACGGTAACGCACCGGATATC
11 1 1 1 11 STM0688 ybfN TCCTAGGAGCTCTTCTTTTACTCATCGCCAGCATGACCGCCGGTTTGACGGCCTGCGCGTCATCACCCGCGCCGGAAGAAGATAGCCGGCTGAAAGAGGCGTACAGCGCCTGTATCAATACCGCACAGGGCTCGCCTGAGAAGATAGAGGCCTGCCAAAGCGTGCTGAATGTCCTTAAAAAAGAGCGCAGACATCAGCAATTTGCTAACGAAGAAAGCGTGCGGGTACTGGACTATCAGCAGTGCATTCAGGCGA
12 1 1 1 12 STM2460 eutH TCCTAGGAGCTCTTCTCGGCGTGGCTATACTCAGGGTTAATACTTGGGTCGATGATGGGGCCGACCATTGTGTTCTCCATTCCGGTGGCGCTCGGCATTATCGAACCGTCTGACCGCCGCTACCTGGCGCTTGGCGTACTGGCGGGTATCGTCACCATTCCCATTGGCTGCATTGCGGGGGGACTGATCGCCATGTACTCAGGTGTGCAGATCAATGGTCAGCCAGTGGAGTTTACCTTCGCGCTGATCCTGATG
13 1 1 1 13 STM3970 ubiE TCCTAGGAGCTCTTCTACGACGCACTTTGGCTTTCAGACCGTCGCTAAAGAGCAGAAAGCTGACATGGTGGCCCACGTTTTTCATTCTGTGGCGTCAAAGTACGATGTGATGAATGACTTAATGTCATTTGGCATTCATCGTTTGTGGAAGCGCTTCACCATTGATTGCAGTGGCGTGCGTCGTGGACAAACCGTTCTCGATTTAGCGGGTGGTACGGGCGATCTTACCGCGAAATTTTCACGTATGGTCGGGGA
14 1 1 1 14 STM3966 TCCTAGGAGCTCTTCTCATCCTGGTGAATGACGAGTGGGCGCGCTTTTTCGCTGAACAGCATTTTCTCATCGGTCTCTCTATCGACGGCCCGGCGTCGTTACACAACCACTATCGGTTTAATCGCGCTGGAAAAGGAACTCATGAACAGGTCGTCGCAGCCATGGCGCGGCTTAAAGCGCACCATGTCGACTTTAATACCTTAACCGTCGTGGGAAAACATAACGTCGGTCATGCAGCAGACGTCTACGAATTTC
15 1 1 1 15 STM3962 yigL TCCTAGGAGCTCTTCTTAATCTGGACAGCGACATTGCCAGCGACCTGTTCGGGGTGGTGAATGCGAACCCGGACATCGTGACTAACGTTTATCGCGACGACGAATGGTTTATGAATCGTCATCGCCCCGATGAAATGCGTTTTTTCAAAGAGGCGGTATTTAACTACTCGCTGTTTGAGCCTGCGCTGCTGGAGCCGGAGGGCGTCAGCAAAGTGTTTTTCACCAGCGACACTCATGAAAAGTTGTTGCCGCTGG
16 1 1 1 16 STM3958 recQ TCCTAGGAGCTCTTCTACCGACCGAATATCCGCTACATGCTGATGGAGAAGTTTAAGCCGCTCGACCAGTTAATGCGCTATGTTCAGGAGCAACGCGGCAAATCGGGTATCATCTACTGTAACAGCCGGGCGAAAGTGGAAGATACCGCTGCGCGCTTGCAAAGTCGCGGCATTAGCGCGGCGGCCTATCATGCGGGGCTGGAAAACGCTATTCGCGTCGATGTGCAGGAAAAATTTCAGCGCGACGATCTGCAA
17 1 1 1 17 STM3954 yigG TCCTAGGAGCTCTTCTTGTCATGCTAACGACGTAACCCAACATATGGATGTGAAATTAATGTTAAGTGTTTTTATTCCTTCATCTGAGAGATGTGTTTCCAGATGTCGTTATTTATTATCATTCGCGCTAATAAATATAATATTTTCCATTTTGGTTGGGGTTTTATTATATTTAAGCTTTGTGATACTGGCAATTTTATTCACAATTTTACTACATTATCTCGTCATTAATTTAAACTGTCAGCGATTCAGAGA
18 1 1 1 18 STM3950 yigB TCCTAGGAGCTCTTCTTTACAGCGGATACGGCAGGCGGTGCGTGAAGCGGAGCCGGAAATCTATCATGACGTTACCCGCTGGCGCCATCGCGCGATAGAGCAGGCCATGCGGGATGCGGGATTATCGGCGCAGGAGGCCATTGCCGGCGCGAATGCGGCGATGATGCATTTTGCCAAATGGCGCAGCCAGATTGAGGTTCCGCAGGCTACCCATGAGACGTTACAGCAGCTTGCGAAAAAATGGCCGCTGGTGGC
19 1 1 1 19 STM4384 sgaB TCCTAGGAGCTCTTCTTGACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAGGGCAGTTCCATGATCATGAAAATGAAAGTGGACCAGTTTTTAACCCAATCAAACATTGACCACACGGTAAACAGCTGCGCGGTTGGCGAGTACAAAAGCGAGTTGAGCGGCGCGGATATCATCATCGCTTCTACCCATATTGCAGGCGAAATCAGCGTGACCGGCAACAAATATGTGGTTGGCGTGCGCAACATGCTGTCG
20 1 1 1 20 STM4398 cycA TCCTAGGAGCTCTTCTTTGTGGCGTTGATTGTGGTCGGGCTGGTGATGATTGCGATGCACTTTAAATCGCCGACAGGCGTTGAAGCGTCTTTCGCGCATCTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTATTAGCGGGTTCTTTGCCGGTTTCCAGATTGCAGTGTTCGCTTTCGTGGGCATTGAGCTGGTTGGTACTACCGCCGCAGAAACTAAAGATCCGGAAAAATCGCTGCCGCGCGCGATTAACTCA

Total number of rows: 5376

Table truncated, full table size 1321 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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