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Status
Public on Aug 24, 2009
Title
NCI S. pombe 44K C50
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Schizosaccharomyces pombe Manufacturer
Agilent
Manufacture protocol
Agilent's in situ synthesis printing; for details visit manufacturer's web site www.chem.agilent.com
Description
Custom 60mer oligonucleotide array that represents alternately the plus and minus strands tiling a large portion of chromosome 2 and small segments of chromosome 1 and 3 at 50bp resolution. Included are following sections: chromosome 2 from position 1000000 to 3049820 and from 4491831 to 4541531 and small sections of chromosome 1 and 3.
Submission date
Jul 23, 2009
Last update date
May 03, 2012
Contact name
Shiv Grewal
Phone
2407607553
Organization name
NCI
Department
LBMB
Lab
Shiv Grewal
Street address
NCI bldg 37 Rm 6068 9000 Rockville Pike
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Samples (60)
GSM432542 , GSM432543 , GSM432544 , GSM432545 , GSM432546 , GSM432547
GSM432548 ,
GSM432549 ,
GSM432550 ,
GSM432551 ,
GSM432554 ,
GSM432555 ,
GSM432556 ,
GSM432557 ,
GSM432558 ,
GSM432559 ,
GSM432560 ,
GSM432561 ,
GSM432562 ,
GSM432563 ,
GSM432564 ,
GSM432565 ,
GSM432566 ,
GSM432567 ,
GSM432568 ,
GSM432575 ,
GSM432576 ,
GSM432577 ,
GSM629241 ,
GSM629242 ,
GSM629243 ,
GSM629244 ,
GSM629245 ,
GSM665038 ,
GSM665039 ,
GSM665040 ,
GSM665041 ,
GSM665056 ,
GSM665057 ,
GSM1376361 ,
GSM1376362 ,
GSM1376363 ,
GSM1376364 ,
GSM2354067 ,
GSM2354068 ,
GSM2354069 ,
GSM2354070 ,
GSM2354071 ,
GSM2354072 ,
GSM2354073 ,
GSM3892338 ,
GSM3892339 ,
GSM3892340 ,
GSM3892341 ,
GSM3892342 ,
GSM3892343 ,
GSM7763470 ,
GSM7763471 ,
GSM7763472 ,
GSM7763473 Series (15)
GSE17271 Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
GSE25597 Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci (ChIP-chip)
GSE25598 Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci (expression)
GSE25605 Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci
GSE26995 Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA (expression)
GSE26997 Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA (ChIP)
GSE26999 Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA
GSE56849 High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture
GSE57159 High resolution Hi-C analysis in S. pombe reveals fundamental elements of genome architecture [Expression Array]
GSE88901 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome [H3-FLAG ChIP]
GSE88904 Snf2 Family Protein Fft3 Suppresses Nucleosome Turnover to Promote Epigenetic Inheritance of Heterochromatin and Proper Replication of the Genome
GSE132797 Nuclear peripheral positioning of heterochromatin by Amo1NUPL2 suppresses nucleosome turnover to promote epigenetic inheritance [ChIP-chip_C50]
GSE132865 Nuclear peripheral positioning of heterochromatin by Amo1NUPL2 suppresses nucleosome turnover to promote epigenetic inheritance
GSE242430 Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance [ChIP-chips_H3-FLAG]
GSE242431 Specialized replication of heterochromatin domains ensures self-templated chromatin assembly and epigenetic inheritance
Data table header descriptions ID gene name gene name
systematic name systematic probe name indicating its genome position
ORF SPOT_ID SEQUENCE RANGE_GB RANGE_START RANGE_END
Data table ID gene name systematic name ORF SPOT_ID SEQUENCE RANGE_GB RANGE_START RANGE_END 1
DarkCorner
DarkCorner
--DarkCorner
2
DarkCorner
DarkCorner
--DarkCorner
3
DarkCorner
DarkCorner
--DarkCorner
4
DarkCorner
DarkCorner
--DarkCorner
5
DarkCorner
DarkCorner
--DarkCorner
6
DarkCorner
DarkCorner
--DarkCorner
7
DarkCorner
DarkCorner
--DarkCorner
8
DarkCorner
DarkCorner
--DarkCorner
9
DarkCorner
DarkCorner
--DarkCorner
10
DarkCorner
DarkCorner
--DarkCorner
11
DarkCorner
DarkCorner
--DarkCorner
12
chr2_1150061_1150120
chr2:1150061-1150120
chr2:1150061-1150120
ATTGATTTGTGTTTTTCCACTACTAACATTTTATAGCCATTTCCAACCATTCATTCCTCT
NC_003423.3
1150061
1150120
13
chr2_2396961_2397020
chr2:2396961-2397020
chr2:2396961-2397020
ACATAAATATTTTCGAGTTTTTCAAGTAACACACTATCTTCAGGTGTTATGTACTGGCCT
NC_003423.3
2396961
2397020
14
SPBC19C2.13c
chr2:1703370-1703311
SPBC19C2.13c TATTGAACCGTACCATTGCTACAGACTCACGAGGAAATATAGAAATAAACGCAGATAATG
NC_003423.3
1703370
1703311
15
rad60
chr2:2409661-2409720
rad60 CTGCTCAAACGTGTAAACTTATAACGTTGCTTTTGCGTTCGAGTAAGAGTGAGGATCTTC
NC_003423.3
2409661
2409720
16
chr2_1358961_1359020
chr2:1358961-1359020
chr2_1358961_1359020
TATAGAACATGTGTATGTTTATTCTTCCTACTAAACAAGTTATGATATAGAAAGGTGTAG
NC_003423.3
1358961
1359020
17
gpi3
chr2:1283661-1283720
gpi3 CAGACTTCTTCTTTCCTCAACCTGGGGGGATTGAAAGCCATATTTTTCAGCTTTCTCAAA
NC_003423.3
1283661
1283720
18
SPBC18H10.07
chr2:1785661-1785720
SPBC18H10.07 TAGATAAAGTACCTAAGTTAGCTGAAAACGAGGGAAACAAATCGCTAGAAAGCAAGGAAT
NC_003423.3
1785661
1785720
19
pex5
chr2:1218961-1219020
pex5 TTGAAGCCCTACTTGAAGCTGTCAAATTGGATTCAACCAATCTTGACTTAATGATGGATC
NC_003423.3
1218961
1219020
20
SPBC21B10.06c
chr2:1663361-1663420
SPBC21B10.06c TGAATTGGAAGCAAATTCGGCAGCAAATCGCTCCCGGTTAATGGACTTCCTTCCTGCCAA
NC_003423.3
1663361
1663420
45220 6339 Kbytes .Supplementary data files not provided
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