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Status
Public on Aug 21, 2009
Title
Agilent-014698 Human Genome CGH Microarray 105A (G4412A) [Probe Name version]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4412A
Description
This kit provides two arrays per slide, each containing over 99,000 60-mer oligonucleotide probes. These probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 18.9 kb and 50.6 kb respectively. This microarray is designed for use with Agilent’s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction. Arrays of this design have barcodes that begin with 16014698 or 2514698. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL4093.
Submission date
Aug 21, 2009
Last update date
Jan 17, 2013
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (353)
GSM546798 , GSM546799 , GSM546800 , GSM546801 , GSM546802 , GSM546803
GSM546804 ,
GSM546805 ,
GSM546806 ,
GSM546807 ,
GSM546808 ,
GSM546809 ,
GSM546810 ,
GSM546811 ,
GSM546812 ,
GSM546813 ,
GSM546814 ,
GSM546815 ,
GSM546816 ,
GSM546817 ,
GSM546818 ,
GSM546824 ,
GSM546825 ,
GSM546826 ,
GSM546827 ,
GSM546828 ,
GSM546829 ,
GSM546830 ,
GSM546831 ,
GSM546832 ,
GSM546833 ,
GSM546834 ,
GSM546835 ,
GSM546836 ,
GSM546837 ,
GSM546838 ,
GSM648815 ,
GSM648816 ,
GSM648817 ,
GSM648818 ,
GSM648819 ,
GSM648820 ,
GSM648821 ,
GSM648822 ,
GSM648823 ,
GSM648824 ,
GSM648825 ,
GSM878882 ,
GSM878883 ,
GSM878884 ,
GSM878885 ,
GSM878886 ,
GSM878887 ,
GSM878888 ,
GSM878889 ,
GSM878890 ,
GSM878891 ,
GSM878892 ,
GSM878893 ,
GSM878894 ,
GSM878895 ,
GSM878896 ,
GSM878897 ,
GSM878898 ,
GSM878899 ,
GSM878900 ,
GSM878901 ,
GSM878902 ,
GSM878903 ,
GSM878904 ,
GSM878905 ,
GSM878906 ,
GSM878907 ,
GSM878908 ,
GSM878909 ,
GSM878910 ,
GSM878911 ,
GSM878912 ,
GSM878913 ,
GSM878914 ,
GSM878915 ,
GSM878916 ,
GSM878917 ,
GSM878918 ,
GSM878919 ,
GSM878920 ,
GSM878921 ,
GSM878922 ,
GSM878923 ,
GSM878924 ,
GSM878925 ,
GSM878926 ,
GSM878927 ,
GSM878928 ,
GSM878929 ,
GSM878930 ,
GSM878931 ,
GSM878932 ,
GSM878933 ,
GSM878934 ,
GSM878935 ,
GSM878936 ,
GSM878937 ,
GSM878938 ,
GSM878939 ,
GSM878940 ,
GSM878941 ,
GSM878942 ,
GSM878943 ,
GSM878944 ,
GSM878945 ,
GSM878946 ,
GSM878947 ,
GSM878948 ,
GSM878949 ,
GSM878950 ,
GSM878951 ,
GSM878953 ,
GSM878956 ,
GSM878957 ,
GSM878959 ,
GSM878962 ,
GSM878963 ,
GSM878964 ,
GSM878965 ,
GSM878966 ,
GSM878967 ,
GSM878968 ,
GSM878969 ,
GSM878970 ,
GSM878971 ,
GSM878972 ,
GSM878973 ,
GSM878974 ,
GSM878975 ,
GSM878976 ,
GSM878977 ,
GSM878978 ,
GSM878979 ,
GSM878980 ,
GSM878981 ,
GSM878982 ,
GSM878983 ,
GSM878984 ,
GSM878985 ,
GSM878986 ,
GSM878987 ,
GSM878988 ,
GSM878989 ,
GSM878990 ,
GSM878991 ,
GSM878992 ,
GSM878993 ,
GSM878994 ,
GSM878995 ,
GSM878996 ,
GSM878997 ,
GSM878998 ,
GSM878999 ,
GSM879000 ,
GSM879001 ,
GSM879002 ,
GSM879003 ,
GSM879004 ,
GSM879005 ,
GSM879006 ,
GSM935684 ,
GSM935685 ,
GSM935686 ,
GSM935687 ,
GSM935688 ,
GSM935689 ,
GSM935690 ,
GSM935691 ,
GSM935692 ,
GSM935693 ,
GSM935694 ,
GSM935695 ,
GSM935696 ,
GSM935697 ,
GSM935698 ,
GSM935699 ,
GSM935700 ,
GSM935701 ,
GSM935702 ,
GSM935703 ,
GSM935704 ,
GSM935705 ,
GSM935706 ,
GSM935707 ,
GSM935708 ,
GSM935709 ,
GSM935710 ,
GSM935711 ,
GSM935712 ,
GSM935713 ,
GSM935714 ,
GSM935715 ,
GSM935716 ,
GSM935717 ,
GSM935718 ,
GSM935719 ,
GSM935720 ,
GSM935721 ,
GSM935722 ,
GSM935723 ,
GSM935724 ,
GSM935725 ,
GSM935726 ,
GSM935727 ,
GSM935728 ,
GSM935729 ,
GSM935730 ,
GSM935731 ,
GSM1010565 ,
GSM1010566 ,
GSM1010567 ,
GSM1010568 ,
GSM1010569 ,
GSM1010570 ,
GSM1010571 ,
GSM1010572 ,
GSM1010573 ,
GSM1010574 ,
GSM1010575 ,
GSM1010576 ,
GSM1010577 ,
GSM1010578 ,
GSM1010579 ,
GSM1010580 ,
GSM1010581 ,
GSM1010582 ,
GSM1010583 ,
GSM1010584 ,
GSM1010585 ,
GSM1010586 ,
GSM1010587 ,
GSM1010588 ,
GSM1010589 ,
GSM1010590 ,
GSM1010591 ,
GSM1010592 ,
GSM1010593 ,
GSM1010594 ,
GSM1010595 ,
GSM1010596 ,
GSM1010597 ,
GSM1010598 ,
GSM1174324 ,
GSM1174325 ,
GSM1174326 ,
GSM1174327 ,
GSM1174328 ,
GSM1174329 ,
GSM1174330 ,
GSM1174331 ,
GSM1174332 ,
GSM1174333 ,
GSM1174334 ,
GSM1174335 ,
GSM1174336 ,
GSM1174337 ,
GSM1174338 ,
GSM1174339 ,
GSM1174340 ,
GSM1174341 ,
GSM1174342 ,
GSM1174343 ,
GSM1174344 ,
GSM1174345 ,
GSM1174346 ,
GSM1614901 ,
GSM1614902 ,
GSM1614903 ,
GSM1614904 ,
GSM1614905 ,
GSM1614906 ,
GSM1614907 ,
GSM1614908 ,
GSM1614909 ,
GSM1614910 ,
GSM1614911 ,
GSM1614912 ,
GSM1614913 ,
GSM1614914 ,
GSM1614915 ,
GSM1614916 ,
GSM1614917 ,
GSM1614918 ,
GSM1614919 ,
GSM1614920 ,
GSM1614921 ,
GSM1614922 ,
GSM1614923 ,
GSM1614924 ,
GSM1614925 ,
GSM1614926 ,
GSM1614927 ,
GSM1614928 ,
GSM1614929 ,
GSM1614933 ,
GSM1614934 ,
GSM1614935 ,
GSM1614936 ,
GSM1614937 ,
GSM1614938 ,
GSM1614939 ,
GSM1614940 ,
GSM1614941 ,
GSM1614942 ,
GSM1614943 ,
GSM1614944 ,
GSM1614946 ,
GSM1614947 ,
GSM1614948 ,
GSM1614949 ,
GSM1614950 ,
GSM1614951 ,
GSM1614952 ,
GSM1614953 ,
GSM1614954 ,
GSM1614955 ,
GSM1614956 ,
GSM1614957 ,
GSM1614958 ,
GSM1614959 ,
GSM1614960 ,
GSM1614961 ,
GSM1614962 ,
GSM1614964 ,
GSM1614965 ,
GSM1614967 ,
GSM1614968 ,
GSM1614969 ,
GSM1614970 ,
GSM1614971 ,
GSM1614972 ,
GSM1614975 ,
GSM1614976 ,
GSM1614977 ,
GSM1614984 ,
GSM1614985 ,
GSM1614986 ,
GSM1614987 ,
GSM1614988 ,
GSM1614989 ,
GSM1615001 ,
GSM1615002 ,
GSM1615003 ,
GSM1615006 ,
GSM1615007 ,
GSM1615016 ,
GSM1615017
Series (9)
GSE21986
Genomic profiling of Imatinib resistance in CD34+ cell populations from chronic myeloid leukaemia patients using Agilent-014698 Whole Human Genome 105K microarrays.
GSE26447
Genomic profiling of ten prostate cancer cell lines
GSE35988
The Mutational Landscape of Lethal Castrate Resistant Prostate Cancer
GSE38137
Copy number analysis of recurrent metastatic melanoma lesions
GSE38187
Gene expression and copy number analysis of recurrent metastatic melanoma lesions
GSE41210
Integrative genomic and transcriptomic characterization of matched primary and metastatic liver and colorectal carcinoma
GSE48297
Concurrent Gene Signatures for Han Chinese Breast Cancers [Agilent]
GSE48391
Concurrent Gene Signatures for Han Chinese Breast Cancers
GSE66136
Genomic DNA damage in oral potentially malignant disorders (OPMDs) and oral squamous cell carcinomas (OSCCs). Early detection of DNA aneuploidy and chromosomal aberrations in non dysplastic OPMDs.
Relations
Alternative to
GPL4093
Data table header descriptions
ID
Probe Name
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GB_RANGE
NCBI Build 35.1 Accession.Version[start..end]
SPOT_ID
Data table
ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GB_RANGE
SPOT_ID
A_14_P100000
FALSE
NM_019027
FLJ20273
RNA-binding protein
ref|NM_019027
chr4:040354254-040354313
hs|p14
Homo sapiens RNA-binding protein (FLJ20273), mRNA.
NC_000004.9[040354254..040354313]
A_14_P100001
FALSE
NM_032888
COL27A1
collagen, type XXVII, alpha 1
ref|NM_032888
chr9:114060099-114060146
hs|q32
Homo sapiens collagen, type XXVII, alpha 1 (COL27A1), mRNA.
NC_000009.9[114060099..114060146]
A_14_P100002
FALSE
chr18:014918795-014918854
hs|p11.21
NC_000018.8[014918795..014918854]
A_14_P100003
FALSE
NM_153262
SYT14
synaptotagmin XIV
ref|NM_153262
chr1:206501334-206501393
hs|q32.2
Homo sapiens synaptotagmin XIV (SYT14), mRNA.
NC_000001.8[206501334..206501393]
A_14_P100005
FALSE
AK055805
gb|AK055805|gb|AF218085
chr21:014876312-014876366
hs|q11.2
Homo sapiens cDNA FLJ31243 fis, clone KIDNE2005038.
NC_000021.7[014876312..014876366]
A_14_P100006
FALSE
chr7:054532292-054532351
hs|p11.2
NC_000007.11[054532292..054532351]
A_14_P100007
FALSE
NM_001008572
TTLL1
tubulin tyrosine ligase-like family, member 1
ref|NM_001008572|ref|NM_012263
chr22:041761894-041761953
hs|q13.2
Homo sapiens tubulin tyrosine ligase-like family, member 1 (TTLL1), transcript variant 2, mRNA.
NC_000022.8[041761894..041761953]
A_14_P100008
FALSE
NM_002375
MAP4
microtubule-associated protein 4
ref|NM_002375|ref|NM_030885
chr3:048069785-048069844
hs|p21.31
Homo sapiens microtubule-associated protein 4 (MAP4), transcript variant 1, mRNA.
NC_000003.9[048069785..048069844]
A_14_P100009
FALSE
NM_020344
SLC24A2
solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
ref|NM_020344
chr9:019636699-019636758
hs|p22.1
Homo sapiens solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (SLC24A2), mRNA.
NC_000009.9[019636699..019636758]
A_14_P100010
FALSE
NM_178443
URP2
UNC-112 related protein 2
ref|NM_178443|ref|NM_031471
chr11:063746801-063746857
hs|q13.1
Homo sapiens UNC-112 related protein 2 (URP2), transcript variant URP2LF, mRNA.
NC_000011.8[063746801..063746857]
A_14_P100011
FALSE
chr1:038500215-038500274
hs|p34.3
NC_000001.8[038500215..038500274]
A_14_P100012
FALSE
NM_015576
CAST1
CAZ-associated structural protein
ref|NM_015576
chr3:056211013-056211072
hs|p14.3
Homo sapiens CAZ-associated structural protein (CAST1), mRNA.
NC_000003.9[056211013..056211072]
A_14_P100013
FALSE
chr3:049117495-049117551
hs|p21.31
NC_000003.9[049117495..049117551]
A_14_P100014
FALSE
NM_145015
MRGPRF
MAS-related GPR, member F
ref|NM_145015
chr11:068528459-068528518
hs|q13.3
Homo sapiens MAS-related GPR, member F (MRGPRF), mRNA.
NC_000011.8[068528459..068528518]
A_14_P100015
FALSE
NM_014012
REM1
RAS (RAD and GEM)-like GTP-binding 1
ref|NM_014012
chr20:029536104-029536161
hs|q11.21
Homo sapiens RAS (RAD and GEM)-like GTP-binding 1 (REM1), mRNA.
NC_000020.9[029536104..029536161]
A_14_P100016
FALSE
NM_006096
NDRG1
N-myc downstream regulated gene 1
ref|NM_006096
chr8:134367165-134367224
hs|q24.22
Homo sapiens N-myc downstream regulated gene 1 (NDRG1), mRNA.
NC_000008.9[134367165..134367224]
A_14_P100017
FALSE
NM_000305
PON2
paraoxonase 2
ref|NM_000305|ref|NM_001018161
chr7:094708478-094708537
hs|q21.3
Homo sapiens paraoxonase 2 (PON2), transcript variant 1, mRNA.
NC_000007.11[094708478..094708537]
A_14_P100018
FALSE
NM_003908
EIF2S2
eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa
ref|NM_003908
chr20:032159244-032159303
hs|q11.22
Homo sapiens eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2), mRNA.
NC_000020.9[032159244..032159303]
A_14_P100019
FALSE
chr13:085638560-085638619
hs|q31.1
NC_000013.9[085638560..085638619]
A_14_P100020
FALSE
NM_006217
SERPINI2
serpin peptidase inhibitor, clade I (pancpin), member 2
ref|NM_006217
chr3:168642463-168642522
hs|q26.1
Homo sapiens serpin peptidase inhibitor, clade I (pancpin), member 2 (SERPINI2), transcript variant 2, mRNA.
NC_000003.9[168642463..168642522]
Total number of rows: 99026 Table truncated, full table size 18378 Kbytes .
Supplementary data files not provided