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Platform GPL9075 Query DataSets for GPL9075
Status Public on Aug 21, 2009
Title Agilent-014698 Human Genome CGH Microarray 105A (G4412A) [Probe Name version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4412A
 
Description
This kit provides two arrays per slide, each containing over 99,000 60-mer oligonucleotide probes. These probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 18.9 kb and 50.6 kb respectively. This microarray is designed for use with Agilent’s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction.

Arrays of this design have barcodes that begin with 16014698 or 2514698.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL4093.
 
Submission date Aug 21, 2009
Last update date Jan 17, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (353) GSM546798, GSM546799, GSM546800, GSM546801, GSM546802, GSM546803 
Series (9)
GSE21986 Genomic profiling of Imatinib resistance in CD34+ cell populations from chronic myeloid leukaemia patients using Agilent-014698 Whole Human Genome 105K microarrays.
GSE26447 Genomic profiling of ten prostate cancer cell lines
GSE35988 The Mutational Landscape of Lethal Castrate Resistant Prostate Cancer
Relations
Alternative to GPL4093

Data table header descriptions
ID Probe Name
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]
SPOT_ID

Data table
ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE SPOT_ID
A_14_P100000 FALSE NM_019027 FLJ20273 RNA-binding protein ref|NM_019027 chr4:040354254-040354313 hs|p14 Homo sapiens RNA-binding protein (FLJ20273), mRNA. NC_000004.9[040354254..040354313]
A_14_P100001 FALSE NM_032888 COL27A1 collagen, type XXVII, alpha 1 ref|NM_032888 chr9:114060099-114060146 hs|q32 Homo sapiens collagen, type XXVII, alpha 1 (COL27A1), mRNA. NC_000009.9[114060099..114060146]
A_14_P100002 FALSE chr18:014918795-014918854 hs|p11.21 NC_000018.8[014918795..014918854]
A_14_P100003 FALSE NM_153262 SYT14 synaptotagmin XIV ref|NM_153262 chr1:206501334-206501393 hs|q32.2 Homo sapiens synaptotagmin XIV (SYT14), mRNA. NC_000001.8[206501334..206501393]
A_14_P100005 FALSE AK055805 gb|AK055805|gb|AF218085 chr21:014876312-014876366 hs|q11.2 Homo sapiens cDNA FLJ31243 fis, clone KIDNE2005038. NC_000021.7[014876312..014876366]
A_14_P100006 FALSE chr7:054532292-054532351 hs|p11.2 NC_000007.11[054532292..054532351]
A_14_P100007 FALSE NM_001008572 TTLL1 tubulin tyrosine ligase-like family, member 1 ref|NM_001008572|ref|NM_012263 chr22:041761894-041761953 hs|q13.2 Homo sapiens tubulin tyrosine ligase-like family, member 1 (TTLL1), transcript variant 2, mRNA. NC_000022.8[041761894..041761953]
A_14_P100008 FALSE NM_002375 MAP4 microtubule-associated protein 4 ref|NM_002375|ref|NM_030885 chr3:048069785-048069844 hs|p21.31 Homo sapiens microtubule-associated protein 4 (MAP4), transcript variant 1, mRNA. NC_000003.9[048069785..048069844]
A_14_P100009 FALSE NM_020344 SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 ref|NM_020344 chr9:019636699-019636758 hs|p22.1 Homo sapiens solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 (SLC24A2), mRNA. NC_000009.9[019636699..019636758]
A_14_P100010 FALSE NM_178443 URP2 UNC-112 related protein 2 ref|NM_178443|ref|NM_031471 chr11:063746801-063746857 hs|q13.1 Homo sapiens UNC-112 related protein 2 (URP2), transcript variant URP2LF, mRNA. NC_000011.8[063746801..063746857]
A_14_P100011 FALSE chr1:038500215-038500274 hs|p34.3 NC_000001.8[038500215..038500274]
A_14_P100012 FALSE NM_015576 CAST1 CAZ-associated structural protein ref|NM_015576 chr3:056211013-056211072 hs|p14.3 Homo sapiens CAZ-associated structural protein (CAST1), mRNA. NC_000003.9[056211013..056211072]
A_14_P100013 FALSE chr3:049117495-049117551 hs|p21.31 NC_000003.9[049117495..049117551]
A_14_P100014 FALSE NM_145015 MRGPRF MAS-related GPR, member F ref|NM_145015 chr11:068528459-068528518 hs|q13.3 Homo sapiens MAS-related GPR, member F (MRGPRF), mRNA. NC_000011.8[068528459..068528518]
A_14_P100015 FALSE NM_014012 REM1 RAS (RAD and GEM)-like GTP-binding 1 ref|NM_014012 chr20:029536104-029536161 hs|q11.21 Homo sapiens RAS (RAD and GEM)-like GTP-binding 1 (REM1), mRNA. NC_000020.9[029536104..029536161]
A_14_P100016 FALSE NM_006096 NDRG1 N-myc downstream regulated gene 1 ref|NM_006096 chr8:134367165-134367224 hs|q24.22 Homo sapiens N-myc downstream regulated gene 1 (NDRG1), mRNA. NC_000008.9[134367165..134367224]
A_14_P100017 FALSE NM_000305 PON2 paraoxonase 2 ref|NM_000305|ref|NM_001018161 chr7:094708478-094708537 hs|q21.3 Homo sapiens paraoxonase 2 (PON2), transcript variant 1, mRNA. NC_000007.11[094708478..094708537]
A_14_P100018 FALSE NM_003908 EIF2S2 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa ref|NM_003908 chr20:032159244-032159303 hs|q11.22 Homo sapiens eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2), mRNA. NC_000020.9[032159244..032159303]
A_14_P100019 FALSE chr13:085638560-085638619 hs|q31.1 NC_000013.9[085638560..085638619]
A_14_P100020 FALSE NM_006217 SERPINI2 serpin peptidase inhibitor, clade I (pancpin), member 2 ref|NM_006217 chr3:168642463-168642522 hs|q26.1 Homo sapiens serpin peptidase inhibitor, clade I (pancpin), member 2 (SERPINI2), transcript variant 2, mRNA. NC_000003.9[168642463..168642522]

Total number of rows: 99026

Table truncated, full table size 18378 Kbytes.




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