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Platform GPL9082 Query DataSets for GPL9082
Status Public on Aug 25, 2009
Title LC_Sanger miRBase 9.0 oligo array_miRNA ID version
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Rattus norvegicus; synthetic construct
Manufacturer LC sciences
Manufacture protocol Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
 
Description Rat miRNA microarray based on miRBase version 9.0, additional custom sequences

This is the miRNA ID version of GPL8195 (Feature Number version).
 
Submission date Aug 24, 2009
Last update date Aug 25, 2009
Contact name Esther E. Dupont-Versteegden
E-mail(s) eedupo2@uky.edu
Phone (859) 323-1100
Fax (859) 323-6003
Organization name University of Kentucky
Department Rehabilitation Sciences
Street address 900 S. Limestone
City Lexington
State/province KY
ZIP/Postal code 40536-0200
Country USA
 
Samples (9) GSM443869, GSM443870, GSM443871, GSM443872, GSM443873, GSM443874 
Series (1)
GSE17776 MicroRNA expression in rat soleus muscle during atrophy induced by hindlimb suspension

Data table header descriptions
ID
miRNA_ID Name according to miRBase
SEQUENCE Target sequence (5' to 3') of the probe

Data table
ID miRNA_ID SEQUENCE
rno-miR-221 rno-miR-221 AGCUACAUUGUCUGCUGGGUUUC
rno-miR-222 rno-miR-222 AGCUACAUCUGGCUACUGGGUCUC
rno-miR-333 rno-miR-333 GUGGUGUGCUAGUUACUUUU
MM_264 MM_264 GACCCAGAGGCGUGGGCACAAA
rno-miR-377 rno-miR-377 AUCACACAAAGGCAACUUUUGG
rno-miR-489 rno-miR-489 AAUGACAUCACAUAUAUGGCAGC
rno-miR-189 rno-miR-189 GUGCCUACUGAGCUGAUAUCAGU
rno-miR-20a rno-miR-20a UAAAGUGCUUAUAGUGCAGGUAG
rno-miR-98 rno-miR-98 UGAGGUAGUAAGUUGUAUUGUU
rno-miR-499 rno-miR-499 UUAAGACUUGCAGUGAUGUUU
rno-miR-23b rno-miR-23b AUCACAUUGCCAGGGAUUACC
rno-miR-183 rno-miR-183 UAUGGCACUGGUAGAAUUCACUG
rno-miR-505 rno-miR-505 GUCAACACUUGCUGGUUUCC
rno-miR-27b rno-miR-27b UUCACAGUGGCUAAGUUCUGC
rno-miR-24 rno-miR-24 UGGCUCAGUUCAGCAGGAACAG
rno-miR-107 rno-miR-107 AGCAGCAUUGUACAGGGCUAUCA
rno-miR-148b rno-miR-148b UCAGUGCAUCACAGAACUUUGU
rno-miR-26b rno-miR-26b UUCAAGUAAUUCAGGAUAGGUU
rno-miR-365 rno-miR-365 UAAUGCCCCUAAAAAUCCUUAU
rno-miR-126* rno-miR-126* CAUUAUUACUUUUGGUACGCG

Total number of rows: 162

Table truncated, full table size 7 Kbytes.




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Supplementary data files not provided
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