GEO help: Mouse over screen elements for information.
Status
Public on Aug 29, 2009
Title
IFR_Salmonella_5.3k_v1.1
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Salmonella enterica
Manufacturer
Institute of Food Research, Norwich, UK
Manufacture protocol
PCR product array of whole ORF's from S. Typhimurium LT2. For description of PCR amplification and printing procedures see Eriksson et al., Molecular Microbiology(2003) 47(1): 103-118.
Support
glass
Coating
aminosilane
Contributor(s)
Lucchini S , Thompson A , Hinton JC
Submission date
Aug 24, 2009
Last update date
Aug 29, 2009
Contact name
Sacha Lucchini
E-mail(s)
sacha.lucchini@bbsrc.ac.uk
Organization name
Institute of Food Research
Department
Molecular Microbiology
Street address
Colney Lane
City
Norwich
ZIP/Postal code
NR4 7UA
Country
United Kingdom
Samples (65)
GSM459105 , GSM459106 , GSM459107 , GSM459108 , GSM459109 , GSM459110
GSM459111 ,
GSM459112 ,
GSM459113 ,
GSM459114 ,
GSM459115 ,
GSM459116 ,
GSM459117 ,
GSM459118 ,
GSM459119 ,
GSM459120 ,
GSM459121 ,
GSM459122 ,
GSM459123 ,
GSM459124 ,
GSM459125 ,
GSM459126 ,
GSM459127 ,
GSM459128 ,
GSM459129 ,
GSM459130 ,
GSM459131 ,
GSM459132 ,
GSM564837 ,
GSM564838 ,
GSM564839 ,
GSM564840 ,
GSM564841 ,
GSM564842 ,
GSM564843 ,
GSM564844 ,
GSM564845 ,
GSM564846 ,
GSM564847 ,
GSM564848 ,
GSM564849 ,
GSM564850 ,
GSM564851 ,
GSM564852 ,
GSM564853 ,
GSM564854 ,
GSM564855 ,
GSM564856 ,
GSM564857 ,
GSM564858 ,
GSM564859 ,
GSM564860 ,
GSM564861 ,
GSM564862 ,
GSM564863 ,
GSM564864 ,
GSM564865 ,
GSM564866 ,
GSM564867 ,
GSM564868 ,
GSM564869 ,
GSM564870 ,
GSM564871 ,
GSM564872 ,
GSM564873
Series (4)
GSE18424
The effect of stpA deletion on S. Typhimurium gene expression during growth in rich medium
GSE18428
StpA prevents RpoS-dependent transcription during mid-exponential growth in S. Typhimurium
GSE18452
Role of stpA in Salmonella typhimurium
GSE22860
The nucleoid-associated protein HU controls three regulons that coordinate virulence and general physiology in Salmonella enterica serovar Typhimurium
Data table header descriptions
ID
METAROW
METACOLUMN
ROW
COLUMN
ORF
Locus tag or Gene name
SYNONYM
SEQUENCE
SPOT_ID
control, empty, etc.
Data table
ID
METAROW
METACOLUMN
ROW
COLUMN
ORF
SYNONYM
SEQUENCE
SPOT_ID
1
1
1
1
1
STM4029
yiiD
TCCTAGGAGCTCTTCTATGGTGGTGGACGAAGAAGGAAATTTAGTTGCAGTGGGCCGCCTTTATATCAATGCAGATAACGAGGCGTCTATCCGTTTTATGGCTGTACATCCCTCGGTACAGGATAAAGGGCTGGGGACATTAATGGCGATGACCCTGGAGTCTGTTGCCCGCCAGGAAGGCGTTAAGCGCGTCACCTGCAGTGCGCGCGAAGATGCGGTTGAGTTCTTTGCCAAACTCGGGTTTGTCAATCAGGG
2
1
1
1
2
STM4532
yjiY
TCCTAGGAGCTCTTCTTCCGTCTATCTGGTGGCTTACCGCTACTACAGCCTGTACATCGCCCAGAAGGTCATGAAACTCGACCCGACGCGCGCGACGCCGGCGGTTATCAATAACGACGGCCTGAACTACGTGCCGACTAACCGCTACGTGCTGTTTGGTCACCACTTCGCCGCCATCGCTGGCGCAGGTCCGCTGGTCGGGCCGGTATTGGCCGCGCAGATGGGCTATCTGCCGGGGACACTGTGGTTACTGGC
3
1
1
1
3
STM3524
glpG
TCCTAGGAGCTCTTCTACCCAGGGCGTCATTCTTACTATTCAGCAACATAATCAAAGCGATATCTGGTTGGCAGATGAATCGCAGGCCGAACGTGTGCGGGGCGAGCTGGCGCGGTTTATAGAAAATCCCGGCGATCCGCGTTATCTGGCGGCTAGCTGGCAGTCCGGGCAGACTAACAGCGGGCTACGCTATCGCCGTTTTCCCTTTCTCGCCACGCTGCGTGAACGAGCCGGCCCTGTTACCTGGATCGTGAT
4
1
1
1
4
STM3607
yhjC
TCCTAGGAGCTCTTCTTTCCCAAAGGCAGCGTCTCACGGCAAATACAAGCGTTAGAACATCAACTGGGCATCCGCCTGCTCCACCGCACCACCCGGCGGGTACAGCTTACTCAGGACGGAATGGTTTACTACGAACGGGCAAAAGATCTGTTGAGTAACCTGGATGAACTGGAGGGTCTTTTCCAGCCTGATCCCGCCAGTATCAGTGGCAAAATACGGGTAGATATACCGCCATGTCTCGCAAACAGCCTCATC
5
1
1
1
5
STM3300
dacB
TCCTAGGAGCTCTTCTGACCACCAGTATAGCGTTCAGCGTTCAGGCCGCGAATATTGACGAATACATCAAACAGCTTCCGGCCGGCGCCAACCTCGCGCTGATGGTGCAAAAGATTGGCGCGCCCGCGCCGGCTATTGATTATCATAGTCAGCAGATGGCGCTTCCCGCCAGTACCCAAAAGGTGATTACCGCGCTGGCGGCGCTGATTCAACTCGGCCCGGATTTCCGTTTTACGACCACGCTGGAGACTAAAG
6
1
1
1
6
STM3229
yqjD
TCCTAGGAGCTCTTCTACCGATACGCTTGAAGAAGTGCTGAGCTCTTCGGGCGAAAAGTCGAAAGAAGAGTTGAGTAAGATTCGTAGCAAAGCCGAGCGCGCGCTGAAAGAGAGCCGTTACCGCCTGGGCGAAACGGGTGATGTGATTGCCAAACAGACTCGCGTCGCCGCCGCCCGCGCCGATGATTATGTGCGCGAAAATCCCTGGACAGGCGTAGGCATTCGAAGAGCCCTAGGCA
7
1
1
1
7
STM2544
yfhP
TCCTAGGAGCTCTTCTGAGACTGACATCTAAAGGGCGTTATGCCGTGACCGCAATGTTAGACGTTGCGCTCAACTCCGAAGCGGGCCCGGTACCGTTGGCTGATATTTCTGAACGTCAGGGGATTTCCCTTTCTTATCTGGAACAGCTATTTTCCCGTTTACGTAAAAACGGTCTGGTTTCCAGCGTACGCGGGCCGGGCGGCGGTTATCTGCTGGGTAAAGATGCTGGCAGTATCGCGGTCGGCGAAGTGATCA
8
1
1
1
8
STM0660
TCCTAGGAGCTCTTCTAGTGGAATCAGCCAGGAGTCGGGTTGAACGAAGCATTTACCGCCCTGACGCCGCTGTTTTCACTCTTTGCCGATGGCTATTACCGACTGGAGGAACGCGAACTTTATCCCACAGATGGCAACGGACATTTTTTCTGGGCGGTGGGTAACGAAAAACAACCGAATCCCGCGACCACAGGGCAGTGGATTGCTGACGTGGACTATCACTACCAGTCCGGCGAACCCTGTTTTTTACTGCCA
9
1
1
1
9
STM0672
TCCTAGGAGCTCTTCTTTATGGTCGTCTTGCTCTGCGCTTTCACCTTCATTGATATCACGGCCAGCGCCGCCTGGTTGATTATTTTGGGTCTGGTTTACCCCGTGGCAGTGTCAATGAGGCTACATATACTGCACCAGAAAAAGGCCGTCATGTTGCGCCAGAATAGTGCGGAATGGATAGTGTATCTGCCAGGGATCCCTGTGCAAGAAAAACAAAGCGCGCTGATTAATGTCGCGTTTTCCTCGAAAACGGCG
10
1
1
1
10
STM0684
nagB
TCCTAGGAGCTCTTCTTTGTCCTTGGACTGCCTACCGGCGGCACGCCGCTAACGGCGTACAAAGCGCTGGTTGAGATGCACAAAGCGGGCGAGGTCAGCTTTAAGCATGTGGTCACCTTTAATATGGACGAATATGTTGGCCTGCCGAAAGAGCATCCGGAAAGCTACCACAGCTTTATGCATCGTAACTTTTTCGATCACGTTGATATTCCAGCAGAAAACATCAATCTTCTCAACGGTAACGCACCGGATATC
11
1
1
1
11
STM0688
ybfN
TCCTAGGAGCTCTTCTTTTACTCATCGCCAGCATGACCGCCGGTTTGACGGCCTGCGCGTCATCACCCGCGCCGGAAGAAGATAGCCGGCTGAAAGAGGCGTACAGCGCCTGTATCAATACCGCACAGGGCTCGCCTGAGAAGATAGAGGCCTGCCAAAGCGTGCTGAATGTCCTTAAAAAAGAGCGCAGACATCAGCAATTTGCTAACGAAGAAAGCGTGCGGGTACTGGACTATCAGCAGTGCATTCAGGCGA
12
1
1
1
12
STM2460
eutH
TCCTAGGAGCTCTTCTCGGCGTGGCTATACTCAGGGTTAATACTTGGGTCGATGATGGGGCCGACCATTGTGTTCTCCATTCCGGTGGCGCTCGGCATTATCGAACCGTCTGACCGCCGCTACCTGGCGCTTGGCGTACTGGCGGGTATCGTCACCATTCCCATTGGCTGCATTGCGGGGGGACTGATCGCCATGTACTCAGGTGTGCAGATCAATGGTCAGCCAGTGGAGTTTACCTTCGCGCTGATCCTGATG
13
1
1
1
13
STM3970
ubiE
TCCTAGGAGCTCTTCTACGACGCACTTTGGCTTTCAGACCGTCGCTAAAGAGCAGAAAGCTGACATGGTGGCCCACGTTTTTCATTCTGTGGCGTCAAAGTACGATGTGATGAATGACTTAATGTCATTTGGCATTCATCGTTTGTGGAAGCGCTTCACCATTGATTGCAGTGGCGTGCGTCGTGGACAAACCGTTCTCGATTTAGCGGGTGGTACGGGCGATCTTACCGCGAAATTTTCACGTATGGTCGGGGA
14
1
1
1
14
STM3966
TCCTAGGAGCTCTTCTCATCCTGGTGAATGACGAGTGGGCGCGCTTTTTCGCTGAACAGCATTTTCTCATCGGTCTCTCTATCGACGGCCCGGCGTCGTTACACAACCACTATCGGTTTAATCGCGCTGGAAAAGGAACTCATGAACAGGTCGTCGCAGCCATGGCGCGGCTTAAAGCGCACCATGTCGACTTTAATACCTTAACCGTCGTGGGAAAACATAACGTCGGTCATGCAGCAGACGTCTACGAATTTC
15
1
1
1
15
STM3962
yigL
TCCTAGGAGCTCTTCTTAATCTGGACAGCGACATTGCCAGCGACCTGTTCGGGGTGGTGAATGCGAACCCGGACATCGTGACTAACGTTTATCGCGACGACGAATGGTTTATGAATCGTCATCGCCCCGATGAAATGCGTTTTTTCAAAGAGGCGGTATTTAACTACTCGCTGTTTGAGCCTGCGCTGCTGGAGCCGGAGGGCGTCAGCAAAGTGTTTTTCACCAGCGACACTCATGAAAAGTTGTTGCCGCTGG
16
1
1
1
16
STM3958
recQ
TCCTAGGAGCTCTTCTACCGACCGAATATCCGCTACATGCTGATGGAGAAGTTTAAGCCGCTCGACCAGTTAATGCGCTATGTTCAGGAGCAACGCGGCAAATCGGGTATCATCTACTGTAACAGCCGGGCGAAAGTGGAAGATACCGCTGCGCGCTTGCAAAGTCGCGGCATTAGCGCGGCGGCCTATCATGCGGGGCTGGAAAACGCTATTCGCGTCGATGTGCAGGAAAAATTTCAGCGCGACGATCTGCAA
17
1
1
1
17
STM3954
yigG
TCCTAGGAGCTCTTCTTGTCATGCTAACGACGTAACCCAACATATGGATGTGAAATTAATGTTAAGTGTTTTTATTCCTTCATCTGAGAGATGTGTTTCCAGATGTCGTTATTTATTATCATTCGCGCTAATAAATATAATATTTTCCATTTTGGTTGGGGTTTTATTATATTTAAGCTTTGTGATACTGGCAATTTTATTCACAATTTTACTACATTATCTCGTCATTAATTTAAACTGTCAGCGATTCAGAGA
18
1
1
1
18
STM3950
yigB
TCCTAGGAGCTCTTCTTTACAGCGGATACGGCAGGCGGTGCGTGAAGCGGAGCCGGAAATCTATCATGACGTTACCCGCTGGCGCCATCGCGCGATAGAGCAGGCCATGCGGGATGCGGGATTATCGGCGCAGGAGGCCATTGCCGGCGCGAATGCGGCGATGATGCATTTTGCCAAATGGCGCAGCCAGATTGAGGTTCCGCAGGCTACCCATGAGACGTTACAGCAGCTTGCGAAAAAATGGCCGCTGGTGGC
19
1
1
1
19
STM4384
sgaB
TCCTAGGAGCTCTTCTTGACCGTACGTATTCTGGCTGTGTGTGGCAACGGACAGGGCAGTTCCATGATCATGAAAATGAAAGTGGACCAGTTTTTAACCCAATCAAACATTGACCACACGGTAAACAGCTGCGCGGTTGGCGAGTACAAAAGCGAGTTGAGCGGCGCGGATATCATCATCGCTTCTACCCATATTGCAGGCGAAATCAGCGTGACCGGCAACAAATATGTGGTTGGCGTGCGCAACATGCTGTCG
20
1
1
1
20
STM4398
cycA
TCCTAGGAGCTCTTCTTTGTGGCGTTGATTGTGGTCGGGCTGGTGATGATTGCGATGCACTTTAAATCGCCGACAGGCGTTGAAGCGTCTTTCGCGCATCTGTGGAATGACGGCGGCTGGTTCCCGAAAGGTATTAGCGGGTTCTTTGCCGGTTTCCAGATTGCAGTGTTCGCTTTCGTGGGCATTGAGCTGGTTGGTACTACCGCCGCAGAAACTAAAGATCCGGAAAAATCGCTGCCGCGCGCGATTAACTCA
Total number of rows: 5376 Table truncated, full table size 1316 Kbytes .
Supplementary data files not provided