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Platform GPL9148 Query DataSets for GPL9148
Status Public on Aug 31, 2010
Title UMN/Agilent Candida albicans 165K tiling array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Candida albicans
Manufacturer Agilent
Manufacture protocol See manufacturer's website.
 
Description 019096_D_20080121
4x44K tiling array for chromosomes 2,3,5,7
Genome version: Assembly 21; 25-Nov-2008; http://www.candidagenome.org/download/sequence/Assembly21/current/
60-mer oligonucleotides.
 
Submission date Sep 03, 2009
Last update date Aug 31, 2010
Contact name Amnon Koren
E-mail(s) koren@genetics.med.harvard.edu
Organization name Harvard Medical School
Department Genetics
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (2) GSM449696, GSM449697
Series (1)
GSE17963 Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase

Data table header descriptions
ID
Chromosome Chromosome number
Start_Coord
End_Coord
RANGE_GB RefSeq accession.version of chromosome
RANGE_START Start coordinate of oligonucleotide relative to RANGE_GB
RANGE_END End coordinate of oligonucleotide relative to RANGE_GB
SEQUENCE Sequence of oligonucleotide

Data table
ID Chromosome Start_Coord End_Coord RANGE_GB RANGE_START RANGE_END SEQUENCE
16 3 324281 324340 CCGCTGTTACTCCAAATTCTGGCAAAGAAAAGAAAAGAATATCTCAAAAGTTTCGCTAAA
17 3 553722 553781 CGAAGACAAAGAAAAGAAAAGACCAAATCTAGATTCAACTCACACACTCTGTCTATAGTA
18 5 1076679 1076738 TTAGTCATTCATTGTGGTCACGTCGACGAAGTGGTTATCCCCACAAATAGAATATTCGTA
19 3 326759 326818 TATTCAAACAAATGAAAAGGATGTCATATTTTCATTAGGCCAATTAAGCATGGTATTTTT
21 2 904168 904227 GTTATACTAGGTTGATCAATTGTCCAAGGATAAGATTTTAACCATGGTTGAGAAAAACGG
22 2 776335 776394 TTATAGGTAAAGTTTTTACCTTCAAGTAATGAACAGGTAATTTGACCACGGTCGGCTCCA
23 2 529723 529782 CTAACATGTTTTTTGTCTTTGATCCTAAACACATGTCAGTTTTTATGGGATCTGAGTAAA
24 2 973148 973207 TTGATTTATAGGAAAATTATACCTTCCACCAGGTAAATAAATTTTCTTAATGATTTCTAA
25 3 797541 797600 GGCGTTTCACAATAGCCTTTTAAAAATGCATTACCACCACTACACAAATTGAAATAATGG
26 7 369495 369554 NC_007436.1 369495 369554 TTTGAGATTCAGATTTTGTCATTATGAAAGAAAAGGGAACAAACAAACAAACAATTGTGT
27 5 805863 805922 CAATTTCTGATTTTCCCAATTTCAAACATAGAGGATTGATGATTGATTCAGGTCGGAACT
28 5 267215 267274 TCAGCAAGATAGTATTGTAATTTTTTCGTTCCCAATCCAACACCAACCACCAAAATCCCA
29 2 1231405 1231464 GGTTGAAATTTATGCGGAAAATTAATTACATGGGGCATCAACCCACACAGAATTTCTTTT
31 2 1003781 1003840 GTGAATGATAATGTTGTGAATCTATATTCTGGTTCTACTGGAGGTTCTAATGGTTTAGGG
32 5 935479 935538 TTCTCCATACTAAATGGAAGGTTATTAAAACTGTACCAATAACATAAATGAGCCGCACTG
34 3 433059 433118 CCTCAAAAATAAACAGCTGATTTATTTTGAAAAACTTTTTTATCTTTCTCTTAGCCGCAA
35 5 368378 368437 TATATCACTGACTATTTACCTGATGGTAAATGTAAAGTTAATGTTGTCAAAGGTCAAGAA
36 2 1582048 1582107 GGTCGCTTTTTCCAAAATGTTGACATTATTCAAGTTTTTGGGATCCATTTTCGACATTTC
39 5 1073479 1073538 TACATGCATCTTCAATTTCATGTATCACAACATCGGCACCTGAACTTTTGTTTCCAATAT
40 2 631214 631273 TCACATTGCCTTTGAACTTCTGGGTCATTTCTAATGATTTCTTCAGTTACTTGCAAATCA

Total number of rows: 165292

Table truncated, full table size 14510 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9148_019096_D_20080121.gal.gz 2.0 Mb (ftp)(http) GAL

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