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Platform GPL9172 Query DataSets for GPL9172
Status Public on Sep 11, 2009
Title Agilent 15K Wheat seed specific microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Triticum aestivum
Manufacturer Agilent
Manufacture protocol The manufacture protocol can be found on the web page of Agilent company (http://www.chem.agilent.com/en-us/products/instruments/dnamicroarrays/pages/gp38516.aspx)
Catalog number 017682
 
Description Oligos were annotated to several databases (http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=wheat) (http://plantta.jcvi.org/cgi-bin/plantta_release.pl) (http://www.genome.jp/kegg/pathway.html) where the there is at least 97% of homology between the sequence of oligo and correspondig contig/gene.
 
Contributor(s) Fehér A, Szűcs A
Submission date Sep 10, 2009
Last update date Sep 11, 2009
Contact name Attila Szűcs
E-mail(s) a.szunyi@gmail.com
Organization name University of Szeged
Department Faculty of Medical Research
Lab Medical Biology
Street address Somogyi utca 4
City Szeged
ZIP/Postal code 6720
Country Hungary
 
Samples (8) GSM453943, GSM453944, GSM453945, GSM453946, GSM453947, GSM453948 
Series (1)
GSE18205 Microarray analysis of heat and/or drought sensitivity of early grain development in wheat (Triticum aestivum L.)

Data table header descriptions
ID
TA_annotation TIGR transcript assemblies wheat annotation
TA_ID TIGR transcript assemblies wheat identifier
SEQUENCE sequence of oligo
GB_ACC GenBank Accession number
Affy_ID Affymetrix wheat identifier
TC_annotation Compbio wheat gene index annotation ver. 11
Function Functional category
GO_term GO term
TC_ID Compbio wheat gene index identifier
tissue known tissue
Uniref_ID Uniref identifier
Kegg_annotation KEGG annotation
Kegg_EC_NUMBER KEGG EC number
Kegg_ID Kegg identifier
Kegg_KO_ID KEGG KO identifier
Kegg_map_ID KEGG map identifier
Kegg_pathway_name KEGG pathway name
Kegg_reaction KEGG reaction
SPOT_ID

Data table
ID TA_annotation TA_ID SEQUENCE GB_ACC Affy_ID TC_annotation Function GO_term TC_ID tissue Uniref_ID Kegg_annotation Kegg_EC_NUMBER Kegg_ID Kegg_KO_ID Kegg_map_ID Kegg_pathway_name Kegg_reaction SPOT_ID
GE_BrightCorner control
DarkCorner control
13734 60S ribosomal protein L19, mitochondrial precursor [Saccharomyces cerevisiae (Baker's yeast)] TA105233_4565 AGTGGGATCCAAAAATCTGAAGCGAGCTGTCGAGAAGGTCATTCACACCACACCCCTCAT GO:0003735|GO:0001759|GO:0006412|GO:0005615|GO:0005762|GO:0005739 TC303217 UniRef100_P53875 large subunit ribosomal protein L11 46601///56616 2867 DFCI: TC303217
123699 TA92125_4565///CJ674807 TGGCCGAAAGCCGAAACGGACGGCAACGGCATTGCCGAAAAGGTCGATGTATCTGGCCCT TC338444 phosphatidylinositol glycan, class B 2.4.1.- 16011 5286 DFCI: TC338444
10388 TA103910_4565 TTCAGTGTCGGAAAGATAGGCGGCCAGGTCATCATAACAGGAGAGATATGGAAGCGGCCA Os02g0294100 protein; n=1; Oryza sativa Japonica Group TC360164 phosphoacetylglucosamine mutase 5.4.2.3 24096 1836 DFCI: TC360164
103474 Putative cytochrome P450-related protein [Oryza sativa (Rice)] TA85167_4565 ACTCTTGCATCGAAACCAAGAAAGGAGGGAAGCAGGAGGATCTCAGCTTGAGCCTGGAGG Os03g0371000 protein; n=2; Oryza sativa Japonica Group GO:0006118|GO:0016020|GO:0005739|GO:0004497|GO:0009536|GO:0016023 TC311886///TC323019 UniRef100_Q9FRC3 DFCI: TC311886
18959 TA107264_4565 CCTGCAATGTCATGGTCTCAAGGCTGCTTCTAACAGCACATTCCTCCACCTTCGCCCCAT TC298492 quinol oxidase polypeptide I 1.9.3.- 24886 2827 DFCI: TC298492
121842 Putative NAD(P)-dependent cholesterol dehydrogenase [Oryza sativa (japonica cultivar-group)] CK209436///TA91454_4565 CCTCCTCCTGGTCCCAGCAGCTCCTCGACGCCGGCGTCCGCTTCTTCCAAGGGGATGT CK209436 Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera GO:0016020|GO:0006694|GO:0003854|GO:0005783 TC285417///TC334445 UniRef100_Q6ZHP8 map00150///map00140 Androgen and estrogen metabolism ///C21-Steroid hormone metabolism 3-beta-hydroxy-Delta(5)-steroid dehydrogenase.
52952 60S ribosomal protein L7A-like [Solanum tuberosum (Potato)] TA61864_4565 UniRef100_Q2VCI3 TIGR: TA61864_4565
13832 TA105270_4565 ACGGGAGCTTCCCAAGGCGCAGCGCCGCCGACTGCCACAGGGAAGAAGAGGAAGGTGGCT TC328099 DFCI: TC328099
28203 TA110801_4565 AGGAGCAGCGTCAAAAGCCATCCTGCATATGCCAAATGTCACATCACCACGGAGTCCCAT Transmembrane pair; n=1; Methylobacillus flagellatus KT TC321804 anaphase-promoting complex component APC11 158915///111523///21522///101233///175708///99735///99790///99724 3358 DFCI: TC321804
29450 TA111289_4565 CGTCACCAATACTATTCACTGAAGTTCTGCCATAATGGAGGCATCAGTCAGCAGCAGA Expressed protein; n=1; Oryza sativa Japonica Group TC316867 DFCI: TC316867
60991 TA66468_4565 ATAATGCCCTCGGTGCCTGTGCCCGCGTTGCCGGTGAGCGGGTCGGCGAG CD899771 Os04g0636800 protein; n=1; Oryza sativa Japonica Group TC287999///CD899771
20607 Putative phospholipase D beta 1 [Oryza sativa (japonica cultivar-group)] TA107912_4565 CCGGCGAGATCCTCCTGATGAACAAGCGCGGCGTCTTCATGAACAGCCTGCAAACGGGGG Os09g0543100 protein; n=1; Oryza sativa Japonica Group TC363738 UniRef100_Q7XJ06 phospholipase D 3.1.4.4 174990 1115 DFCI: TC363738
151230 BE398380///TA96656_4565 ACAGGTCCTCCAGATGGGGTATCAGACACAAACCCAAGGAGGCATTTAAAGAGCTGAAGC BE398380 Os01g0896300 protein; n=1; Oryza sativa Japonica Group TC307271 lysyl-tRNA synthetase, class II 6.1.1.6 14024 4567
16645 TA106409_4565 CCGGCCCAGGCTCGAGCACCGCTTCAGGATCTGCTTCAGCCCCGCCGCGCCTCCCTTCTT Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera GO:0003674|GO:0005516|GO:0005739|GO:0009734|GO:0009733|GO:0050896|GO:0005575 TC351930 DFCI: TC351930
10913 TA104116_4565 TIGR: TA104116_4565
92494 Putative MAP4 kinase [Oryza sativa (japonica cultivar-group)]///GCK-like kinase MIK [Zea mays (Maize)] TA81007_4565///TA81006_4565///BJ316905///TA81008_4565///CA660529 AGCCCCCCTCGGAAGCTGGAAGCAACAAGAAACAAGCTAGTACGCCACCATTGGCTGCT CA660529 GCK-like kinase MIK; n=2; Zea mays TC282986///TC320789///TC322530///CA660529 UniRef100_Q7EZ29///UniRef100_Q6Y2W8
317550 Putative dipeptidyl peptidase IV [Arabidopsis thaliana (Mouse-ear cress)] BE430873///CD915440///CK197113///TA75204_4565 ACCGCCTCCCTACAAAACACTTGTTAATGTTTATGGTGGTCCCAGTGTCCAGCTCGT BE430873 Ta.9793.1.A1_at SOM2_3///Chromosome chr16 scaffold_86, whole genome shotgun sequence; n=1; Vitis vinifera senescence/catabolism TC280089///TC299796///CK197113///TC312598 NULL UniRef100_Q9FNF6
17988 TA106936_4565 CGTGGAGTTATGGGCATGATCACCTGTAGTATCGAAATTTAAGGGTTAAAATGTCGGGCT Ta.24958.1.S1_at Ubiquitin conjugating enzyme 2; n=1; Zea mays///SOM2_4 senescence/catabolism TC345379 NULL DFCI: TC345379

Total number of rows: 15090

Table truncated, full table size 4029 Kbytes.




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