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Platform GPL9190 Query DataSets for GPL9190
Status Public on Sep 22, 2009
Title DKFZ SC137 / Operon Human 38k V4.0 + 10q22p - r6
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer Division of Molecular Genetics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Manufacture protocol 70mer oligonucleotides were diluted in FBNC buffer (G. Wrobel et al., Nucleic Acids Res 31 e67, 2003) and spotted on epoxy-silane coated glass slides (Schott Nexterion) with stainless steel split pins (SMP3, Telechem) at 20C and 40perc. rH. Slides were dried (1 hr at 60C) and DNA was UV-crosslinked with 240 mJ/cm2 at 254 nm. Slides were stored, sealed airtight and dry, at 4C.
Support glass
Coating epoxy-silane
 
Description Spotted long oligonucleotide array, produced using the Operon Human Genome Array-Ready Oligo Set AROS Version 4.0 (35,035 70mer oligonucleotides and additional 764 10p and 22q specific oligonucleotides).
Keywords = spotted
Keywords = human
Keywords = long oligonucleotide
Keywords = oligo
Keywords = 70mer
Keywords = Operon
 
Web link http://www.dkfz-heidelberg.de/genetics/ChipYard/
Contributor(s) Toedt G, Barbus S, Hahn M, Lichter P
Submission date Sep 14, 2009
Last update date Sep 22, 2009
Contact name Grischa Toedt
Organization name German Cancer Research Center (DKFZ)
Department Molecular Genetics (B060)
Lab Prof. Peter Lichter
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Samples (139) GSM454008, GSM454009, GSM454010, GSM454011, GSM454012, GSM454016 
Series (1)
GSE18166 Genome-Wide Profiling of Astrocytic Gliomas

Data table header descriptions
ID ID
PIMS_ID DKFZ database (PIMS) feature ID
OLIGO_ID
GENE_SYMBOL Gene symbol
GENE_NAME Gene name
ENSEMBL_GENE_ID Ensembl identifier (gene ID)
ENSEMBL_VERSION Ensembl build used to retrieve gene information
ENTREZ_ID Gene ID from entrez genes
SPOT_ID

Data table
ID PIMS_ID OLIGO_ID GENE_SYMBOL GENE_NAME ENSEMBL_GENE_ID ENSEMBL_VERSION ENTREZ_ID SPOT_ID
1 OL002588 H200002589 FBXO3 F-box only protein 3 ENSG00000110429 54_36p 26273 ENSG00000110429
2 OL002578 H200002579 TBC1D20 TBC1 domain family member 20 ENSG00000125875 54_36p 128637 ENSG00000125875
3 OL002551 H200002552 H200002552
4 OL002544 H200002545 AATF Protein AATF (Apoptosis-antagonizing transcription factor)(Rb-binding protein Che-1) ENSG00000108270 54_36p 26574 ENSG00000108270
5 OL001958 H200001959 MOSC1 MOSC domain-containing protein 1, mitochondrial Precursor (EC 1.-.-.-) ENSG00000186205 54_36p 64757 ENSG00000186205
6 OL001948 H200001949 WDR7 WD repeat-containing protein 7 (TGF-beta resistance-associated protein TRAG)(Rabconnectin-3 beta) ENSG00000091157 54_36p 23335 ENSG00000091157
7 OL001908 H200001909 ARID3B;LPHN2 AT-rich interactive domain-containing protein 3B (ARID domain-containing protein 3B)(Bright-like)(Bright and dead ringer protein);Latrophilin-2 Precursor (Calcium-independent alpha-latrotoxin receptor 2)(Latrophilin homolog 1)(Lectomedin-1) ENSG00000179361;ENSG00000117114 54_36p 23266;10620 ENSG00000179361;ENSG00000117114
8 OL001895 H200001896 ZFR2 Zinc finger RNA-binding protein 2 ENSG00000105278 54_36p 23217 ENSG00000105278
9 OL001865 H200001866 LIPC Hepatic triacylglycerol lipase Precursor (Hepatic lipase)(HL)(EC 3.1.1.3)(Lipase member C) ENSG00000166035 54_36p 3990 ENSG00000166035
10 OL001857 H200001858 ZBED1;DHRSX Zinc finger BED domain-containing protein 1 (dREF homolog)(Putative Ac-like transposable element);Dehydrogenase/reductase SDR family member on chromosome X Precursor (EC 1.1.-.-)(DHRSXY) ENSG00000214717;ENSG00000169084 54_36p 207063;9189 ENSG00000214717;ENSG00000169084
11 OL001828 H200001829 C19orf22 R3H domain-containing protein C19orf22 ENSG00000198858 54_36p 91300 ENSG00000198858
12 OL001821 H200001822 ZDHHC7 Palmitoyltransferase ZDHHC7 (EC 2.3.1.-)(Zinc finger DHHC domain-containing protein 7)(DHHC-7)(Zinc finger protein 370) ENSG00000153786 54_36p 55625 ENSG00000153786
13 OL001259 H200001259 FAM44B Protein FAM44B ENSG00000145919 54_36p 91272 ENSG00000145919
14 OL001249 H200001249 SLC17A7 Vesicular glutamate transporter 1 (VGluT1)(Solute carrier family 17 member 7)(Brain-specific Na(+)-dependent inorganic phosphate cotransporter) ENSG00000104888 54_36p 57030 ENSG00000104888
15 OL001217 H200001217 H200001217
16 OL001204 H200001204 AC005277.1 Rho GTPase-activating protein RICH2 (RhoGAP interacting with CIP4 homologs protein 2)(Rho-type GTPase-activating protein RICH2)(RICH-2)(NPC-A-10) ENSG00000006740 54_36p 9912 ENSG00000006740
17 OL001170 H200001170 PPP1R13B Apoptosis-stimulating of p53 protein 1 (Protein phosphatase 1 regulatory subunit 13B) ENSG00000088808 54_36p 23368 ENSG00000088808
18 OL001162 H200001162 ARHGAP20 Rho GTPase-activating protein 20 (Rho-type GTPase-activating protein 20) ENSG00000137727 54_36p 57569 ENSG00000137727
19 OL001129 H200001129 ZDHHC2 Palmitoyltransferase ZDHHC2 (EC 2.3.1.-)(Zinc finger DHHC domain-containing protein 2)(DHHC-2)(Zinc finger protein 372)(Reduced expression associated with metastasis protein)(Ream)(Reduced expression ENSG00000104219 54_36p 51201 ENSG00000104219
20 OL001116 H200001116 UFM1 Ubiquitin-fold modifier 1 Precursor ENSG00000120686 54_36p 51569 ENSG00000120686

Total number of rows: 37632

Table truncated, full table size 7662 Kbytes.




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