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Platform GPL9271 Query DataSets for GPL9271
Status Public on May 18, 2010
Title Lactobacillus casei ATCC 334 5.1K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Lactobacillus helveticus; Lacticaseibacillus paracasei ATCC 334
Manufacturer Affymetrix
Manufacture protocol The DNA is printed, spotted, or actually synthesized directly onto the support. The whole process is based on hybridization probing, a technique that uses fluorescently labeled nucleic acid molecules as "mobile probes" to identify complementary molecules, sequences that are able to base-pair with one another.
Catalog number 520464
 
 
Contributor(s) Broadbent JR, Larsen RL, Deibel V, Steele JL
Citation(s) 20207759
Submission date Sep 22, 2009
Last update date May 18, 2010
Contact name Jeff Broadbent
E-mail(s) broadbent.jeff@gmail.com, rlthompson28@hotmail.com
Phone 435-797-2146
Fax 435-797-2379
Organization name Utah State University
Department NFS
Street address 750 N 120 E
City Logan
State/province UT
ZIP/Postal code 84322
Country USA
 
Samples (62) GSM555558, GSM555559, GSM555560, GSM555561, GSM555562, GSM555563 
Series (2)
GSE22318 Physiological and transcriptional response of Lactobacillus casei ATCC 334 to acid stress
GSE23660 Genome heterogeneity in Lactobacillus helveticus: Rethinking a “niche specialist”*

Data table header descriptions
ID
Identifier Source Source for probe sequence
Description Description of gene function from which probe was designed
ORGANISM
ergoId ID that gene is known on ERGO
ORF
SPOT_ID

Data table
ID Identifier Source Description ORGANISM ergoId ORF SPOT_ID
AFFX-Athal-25SrRNA_s_at GenBank A. thaliana /GEN=25S rRNA /DB_XREF=gb:X52320.1 /NOTE=SIF corresponding to nucleotides 3668-3759 of gb:X52320.1 /DEF=Arabidopsis thaliana genes for 5.8S rRNA and 25S rRNA with 18S rRNA fragment. --control
AFFX-Athal-5SrRNA_at GenBank A. thaliana /GEN=5S rRNA /DB_XREF=gb:M65137.1 /NOTE=SIF corresponding to nucleotides 29-468 of gb:M65137.1 /DEF=Arabidopsis thaliana 5S ribosomal RNA gene, complete cds. --control
AFFX-Athal-Actin_3_f_at GenBank A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 1036-1597 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds. --control
AFFX-Athal-Actin_5_r_at GenBank A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 8-329 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds. --control
AFFX-Athal-Actin_M_at GenBank A. thaliana /GEN=actin-2 /DB_XREF=gb:U37281.1 /NOTE=SIF corresponding to nucleotides 642-916 of gb:U37281.1 /DEF=Arabidopsis thaliana actin-2 mRNA, complete cds. --control
AFFX-Athal-GAPDH_3_s_at GenBank A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 1036-1241 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds. --control
AFFX-Athal-GAPDH_5_s_at GenBank A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 58-430 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds. --control
AFFX-Athal-GAPDH_M_s_at GenBank A. thaliana /GEN=GapC /DB_XREF=gb:M64116.1 /NOTE=SIF corresponding to nucleotides 488-775 of gb:M64116.1 /DEF=Arabidopsis thaliana glyceraldehyde 3-phosphate dehydrogenase C subunit (GapC) gene, complete cds. --control
AFFX-Athal-Ubq_3_f_at GenBank A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 767-1090 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds. --control
AFFX-Athal-Ubq_5_f_at GenBank A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 6-356 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds. --control
AFFX-Athal-Ubq_M_f_at GenBank A. thaliana /GEN=UBQ11 /DB_XREF=gb:U84969.1 /NOTE=SIF corresponding to nucleotides 452-759 of gb:U84969.1 /DEF=Arabidopsis thaliana ubiquitin (UBQ11) gene, complete cds. --control
AFFX-BioB-3_at GenBank E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioB-5_at GenBank E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioB-M_at GenBank E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioC-3_at GenBank E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioC-5_at GenBank E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioDn-3_at GenBank E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-BioDn-5_at GenBank E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. --control
AFFX-CreX-3_at GenBank Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --control
AFFX-CreX-5_at GenBank Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. --control

Total number of rows: 5148

Table truncated, full table size 597 Kbytes.




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Supplementary file Size Download File type/resource
GPL9271_CASEIa520464F.cdf.gz 598.0 Kb (ftp)(http) CDF
GPL9271_ProbeSequenceFile_CASEIa520464F_1.txt.gz 1.2 Mb (ftp)(http) TXT

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