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Platform GPL9432 Query DataSets for GPL9432
Status Public on Nov 03, 2009
Title JCVI PFGRC Streptococcus agalactiae 10K v2 array designed primarily based on strain 2603V/R
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Streptococcus agalactiae
Manufacturer JCVI PFGRC
Manufacture protocol 2QSB, with arrayer LUCIDEA, mode Normal, replicates 3, repeats 1, slide_dips 38, machine cycles 996190, pen id 10185, pen cycles -1, operator Sonal/Ben, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 2771 oligonucleotides, has 10800 spots distributed in 72 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Oct 12, 2009
Last update date Nov 03, 2009
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain 2603V/R Target map of strain 2603V/R
Strain A909 Target map of strain A909
Strain NEM316 Target map of strain NEM316
ORF Locus tag
SPOT_ID control, obsolete, etc.

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain 2603V/R Strain A909 Strain NEM316 ORF SPOT_ID
2SB00001_A_1 ATGCTTTGTATACCTATGGTTATGCATAAAAATCCCAGTGATAAAAGTATTTATCACTGGGATTTTTATG 30.0 31 202 2603V/R SAG0924 Tn916, tetM leader peptide SAG0924::70::100.0::4.1E-11::+ SAG0924
2SB00001_A_10 ATGAGAAGCACTCTACTGGAGAGAATGCTAATCAAAAATCACGTCTAAAAGATTTAAGGAAACAATTTTT 31.43 31 86 2603V/R SAG2085 hypothetical protein SAG2085::70::100.0::2.5E-11::+ SAK_2024::70::100.0::2.5E-11::+ gbs2040::70::100.0::2.5E-11::+ SAG2085
2SB00001_A_11 ATAAAACCTCCAAAGGTATTGATATTATAGGTTCACTTGATTATACTATATGGTATCAAATGTCACAAAT 27.14 30 97 2603V/R SAG1309 hypothetical protein SAG1309::70::100.0::3.8E-11::+ SAG1309
2SB00001_A_12 CGATTATTTAAAAAAAGCTTCTGAACTACGAGAAGCAGTTCAAAAGCTTGAACAATTCCAATTTACTGGA 32.86 34 133 NEM316 gbs1217 hypothetical protein gbs1217::70::100.0::2.4E-11::+ gbs1217
2SB00001_A_13 GTAGGCAAGAAAAAGGGCACCTTGATGGGTGTCTTTTTTTATGCTAAAAAATTACAATACATTGATGAGT 34.29 29 95 Obsolete Obsolete Obsolete --Obsolete
2SB00001_A_14 CTTATGATTATCATAAGATATCGGAAGATGGTAAAGAAAAACTATCAATCAAAATTGATAGTGGTTGGGT 30.0 31 89 NEM316 gbs1219 hypothetical protein gbs1219::70::100.0::2.4E-11::+ gbs1219
2SB00001_A_15 CTTGTTATCCAAACAAACAATTTGCTTGCGAAAATACTGACTCTAAATACAACTATAGCTATTTAGAAAA 28.57 32 96 2603V/R SAG1127 hypothetical protein SAG1127::70::100.0::2.9E-11::+ SAK_1214::70::100.0::2.9E-11::+ gbs1195::70::100.0::2.9E-11::+ SAG1127
2SB00001_A_16 AAGGATCTGACAGAGCGATTAGACAATTTAGAAAATGATAAAGATTCAATTATACTTAACAAATTAAAGC 27.14 33 85 NEM316 gbs1970 hypothetical protein gbs1970::70::100.0::2.4E-11::+ gbs1970
2SB00001_A_17 ATGGCACTTGACTATCAGACGGATTATGTGGAGCTAAGAAGTCGAGATGAGACTGGAGTTCGCAGAGCAA 47.14 30 80 A909 SAK_0755 hypothetical protein SAK_0755::70::100.0::3.7E-11::+ SAK_0755
2SB00001_A_18 CAGATATTACTTTTACAAAAAGTGGAAAAAATAATTTTGACTATACACTAAGGATAAAAACTAAAAACAA 21.43 34 98 2603V/R SAG1023 hypothetical protein SAG1023::70::100.0::2.4E-11::+ SAG1023
2SB00001_A_19 AGAGAGCTATTAGCTCTCTTTTTGTTACATTATATTGACAAATATTATCAGTTCAGATATTTTTCAAAAA 24.29 32 100 2603V/R SAG0009 hypothetical protein SAG0009::70::100.0::3.7E-11::+ SAG0009
2SB00001_A_2 TCATTTTTAAACTTGTAGGTTTTGGTTTAATTTTGTTAACAAGTCGCTGCGGTTTGAGACGCAATGAAAA 32.86 31 86 2603V/R SAG1052 cell wall surface anchor family protein, putative SAG1052::70::100.0::2.5E-11::+ SAK_1142::70::100.0::2.2E-11::+ gbs1087::70::100.0::2.7E-11::+ SAG1052
2SB00001_A_20 AATCATCCCGATAAAATCGAGGTTCCAAAGTATTGCCCAAAGGAGAGAAAAGTAACACTACATATTGAAT 35.71 30 65 2603V/R SAG1484 50S ribosomal protein L33 rpmG SAG1484::70::100.0::2.4E-11::+ SAG1484
2SB00001_A_21 TAGGTGGAATCTATCTGATTTCTATCATCATTTTGATTGTTGAAATCATCCGTGCACCAGAAATGGATGA 35.71 32 108 2603V/R SAG1298 hypothetical protein SAG1298::70::100.0::3.7E-11::+ SAG1298
2SB00001_A_22 ATTCTTTACTCGACAAATTGTGGTTGGTGTAAACTGGTATGTACTTCCCAAAATTGATAACTATTTCAAC 32.86 30 82 2603V/R SAG1697 hypothetical protein SAG1697::70::100.0::2.4E-11::+ SAG1697
2SB00001_A_23 GCTATTCAATACATGAAATCCGTTAATTTTTTCTTCTCTGTTTGCAATCAGTATTTTTATAAATCTATCA 25.71 31 85 2603V/R SAG1539 hypothetical protein SAG1539::70::100.0::3.7E-11::+ SAG1539
2SB00001_A_24 CTCCAGACCGTCTTCAATTGAAAAAATACTCACCAAAACTTCGTAAACACGTTGTTTTCACTGAGGTTAA 37.14 32 90 NEM316 gbs2063 50S ribosomal protein L33 rpmG SAG2110::70::98.57143::6.0E-11::+ SAK_2049::70::98.57143::6.0E-11::+ gbs2063::70::100.0::2.4E-11::+ gbs2063
2SB00001_A_3 GATCAAATGATTGAAGATTGGATCAGCAATGGTTTTCCAGATGAACTGAAGCGCCTAATACCAGACGAGG 42.86 31 74 NEM316 gbs0695 hypothetical protein gbs0364::70::100.0::2.0E-11::+,gbs0695::70::100.0::3.8E-11::+,gbs1013::70::100.0::3.8E-11::+ gbs0695
2SB00001_A_4 CTAACTTGAAAATCAACACTTATTTTCAAATATTTTCAATTTGTCAAGAAATATGCTTACAAAGACTATC 24.29 33 116 2603V/R SAG1080 hypothetical protein SAG1080::70::100.0::2.5E-11::+ SAG1080
2SB00001_A_5 TGTCTTTGATATAGATGGAACTCTTTGTTTTGATGGTATGAGTCTATCTAAAGAAATACAAGGAATACTA 30.0 32 105 2603V/R SAG1133 hypothetical protein SAG1133::70::100.0::1.1E-11::+ SAK_1219::70::100.0::1.1E-11::+ gbs1200::70::100.0::1.1E-11::+ SAG1133

Total number of rows: 3305

Table truncated, full table size 696 Kbytes.




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