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Platform GPL9441 Query DataSets for GPL9441
Status Public on Nov 03, 2009
Title JCVI PFGRC Chlamydia pneumoniae 10K v1 array designed primarily based on strain D/UW-3/CX
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Chlamydia pneumoniae
Manufacturer JCVI PFGRC
Manufacture protocol QCP, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 2976062, pen id 179, pen cycles -1, operator ROBIN, humidity control On, humidity set point65
Coating Epoxy
 
Description This set includes 2059 oligonucleotides, has 10752 spots distributed in 96 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Oct 13, 2009
Last update date Nov 03, 2009
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain D/UW-3/CX Target map of strain D/UW-3/CX
Strain CWL029 Target map of strain CWL029
Strain AR39 Target map of strain AR39
Strain J138 Target map of strain J138
ORF Locus tag
SPOT_ID control, obsolete, etc.

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain D/UW-3/CX Strain CWL029 Strain AR39 Strain J138 ORF SPOT_ID
QCP00001_A_1 TGATTACATCTAACTCTAATCTGATTCAATTGAGACAAAAAAAGAACCTAGGAGGATTTCCTAGGTTCTT 32.86 31 108 AR39 CP0856 hypothetical protein CP0856::70::100.0::2.8E-11::+ CP0856
QCP00001_A_10 AGGATCGTTTTGGAAGTTTCTTAGAAGCAACCATCCGTGATCGGGTCTCTTTTTTAGTCTTACAAGAAAA 38.57 29 96 AR39 CP0074 hypothetical protein CPn0673::70::100.0::1.5E-11::+ CP0074::70::100.0::1.5E-11::+ CPj0673::70::100.0::1.5E-11::+ CP0074
QCP00001_A_11 GTGTATAGAAAGCTCATTTTCTCATTTAAGAGATTTTTTCTTGAAGACCTTTTCTGATTTTCATAAGAAA 27.14 34 89 AR39 CP0734 hypothetical protein CP0734::70::100.0::2.7E-11::+ CP0734
QCP00001_A_12 TTTATTTGGAGTCTGGGACGATAACCAAATTACAGAGTGTGACGATAGTTACATGACAGAGGGTCGTGAA 41.43 30 70 AR39 CP0785 hypothetical protein CPn1064::70::100.0::1.5E-11::+ CP0785::70::100.0::1.5E-11::+ CPj1064::70::100.0::1.5E-11::+ CP0785
QCP00001_A_13 ACGAGTCTCGGGCGTAGCGCCATTTTCTACTTTACAGGTTCTCTAAAACATCTTCGTTTGGGAGAATTTC 44.29 30 71 AR39 CP0300 hypothetical protein CP0300::70::100.0::2.7E-11::+ CP0300
QCP00001_A_14 CAATTGTAAGCATGCCCTTCTTCCTCATACTATATGCCCTTCTTGTGGATTTTATAACGGTAAAGCCGTT 40.0 29 74 AR39 CP0899 50S ribosomal protein L32 CPn0961::70::100.0::1.4E-11::+ CP0899::70::100.0::1.4E-11::+ CPj0961::70::100.0::1.4E-11::+ CP0899
QCP00001_A_15 TGCGCAGCACCCCTCAACTCCCATGACTATAATCCTTACAGACCACAAACAGCTACTTATGGTCCCTTTT 47.14 30 68 AR39 CP0389 hypothetical protein CP0389::70::100.0::2.7E-11::+ CP0389
QCP00001_A_16 TGTTTTCTCTCAAATGATGCATCCTGTTACCAAACGTTGGGTTTCTTTGACTGAGGGGTGGACCGAAGGA 45.71 30 106 D/UW-3/CX CT326.2 hypothetical protein CT326.2::70::100.0::1.4E-11::+ CT326.2
QCP00001_A_17 CTCACTATAAAACTCTTAAAACTATAAAAATTCCGAACTTTTATACTATATCGAAAGCAATTCATCCAGG 28.57 32 98 AR39 CP0494 hypothetical protein CP0494::70::100.0::2.7E-11::+ CP0494
QCP00001_A_18 ACGAAACCTAGAGGTAATGTTAGATAATCCTAAGGGAAAAAGGCAAACCTTATTTTTAGGGAGAACTTCA 35.71 30 92 AR39 CP0364 hypothetical protein CPn0391::70::100.0::1.4E-11::+ CP0364::70::100.0::1.4E-11::+ CPj0391::70::100.0::1.4E-11::+ CP0364
QCP00001_A_19 CCTATTTGAAAAAATGGGAATGGCTTTTTTTATAATAGGTCGAACCAAAGAGGAACTTGTTTCATTAAAA 30.0 31 98 AR39 CP0798 hypothetical protein CP0798::70::100.0::2.5E-11::+ CP0798
QCP00001_A_2 TTTGATATCCTTCTGACTGTAGAAGGATTTCTGTGTTTAACTTTATATTTTGCATCTGTGCAGAGAATGC 34.29 31 97 CWL029 CPn0656 hypothetical protein CPn0656::70::100.0::1.5E-11::+ CPj0656::70::100.0::1.5E-11::+ CPn0656
QCP00001_A_20 TGAGGAACTGGGCATAGTGGCTCAGTGTATTGTTTGCTATACAGAAAAGAATGTGCTTTTGGTTCTTGGA 41.43 30 83 AR39 CP1027 hypothetical protein CP1027::70::100.0::1.4E-11::+ CPj0842::70::100.0::1.5E-11::- CP1027
QCP00001_A_21 CCATCCTCTTATGAGGATGGGAATAGAGAAACTTAAATTGAAAATTTTGATTACTTATCGTCGTTATCAA 31.43 31 82 AR39 CP0250 hypothetical protein CP0250::70::100.0::2.5E-11::+ CP0250
QCP00001_A_22 AAAACATTTCTAAAACCAAAACTTCAAGGTAAAGGGTGTCAAAGGAGGAGCCTCATTTACAGCTTCTATA 35.71 30 91 J138 CPj0747A hypothetical protein CPj0747A::70::100.0::1.4E-11::+ CPj0747A
QCP00001_A_23 ACAAAAAGCTTTTTTCTCTTGCTTCAGATAGGGTTTGCATGCCTATTAAGTCACCTTAATGGCTCCTACT 38.57 30 82 AR39 CP0227 hypothetical protein CP0227::70::100.0::2.5E-11::+ CP0227
QCP00001_A_24 TGGAGTTTTTATTGCTACGGCTTACTTCAAGGTTTGTTTTCCTATAAAACGTTGCCCCCCTGCATTTACC 41.43 30 66 AR39 CP0953 hypothetical protein CPn0913::70::100.0::1.4E-11::+ CP0953::70::100.0::1.4E-11::+ CPj0913::70::100.0::1.4E-11::+ CP0953
QCP00001_A_3 AAGCTGGGACAAGCTAGGGTAACGGCAGGGTCTTGTTTAGCAAAATTTCAGACCGAAACGTTGTTGAAAA 44.29 28 86 AR39 CP0591 hypothetical protein CP0591::70::100.0::2.8E-11::+ CP0591
QCP00001_A_4 TTTTCTGTTTTCGAGAGTTGAGGGTACGTTTATCATCCTTAATATCAAATAGTATTACAACATACTTCAA 30.0 30 99 J138 CPj0213 hypothetical protein CPj0213::70::100.0::1.5E-11::+ CPj0213
QCP00001_A_5 ACCTTGGAATAAAATAATTGATATGAGTAGCTTAGTTGCTTTAACTTATGTTTTTGAGCATGATGACATC 30.0 32 81 AR39 CP0767 hypothetical protein CP0767::70::100.0::2.8E-11::+ CP0767

Total number of rows: 2565

Table truncated, full table size 491 Kbytes.




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