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Platform GPL9443 Query DataSets for GPL9443
Status Public on Oct 01, 2010
Title Agilent custom Human 14K Oligo Microarray
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description This is a custom array designed for 11,000 genes from the 'Agilent-012391 Whole Human Genome Oligo Microarray G4112A' array contained in GEO as GPL6848.
 
Submission date Oct 13, 2009
Last update date May 25, 2012
Contact name Men-Luh Yen
Organization name National Taiwan University
Street address No.1, Sect. 1, Jen-Ai Road
City Taipei
ZIP/Postal code 100
Country Taiwan
 
Samples (4) GSM461686, GSM461687, GSM461688, GSM461689
Series (1)
GSE18543 Mesenchymal progenitors from hESCs & profiling vs. BMMSCs
Relations
Affiliated with GPL6848

Data table header descriptions
ID
NAME
CONTROL_TYPE
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL
GENE-NAME
UNIGENE_ID
ENSEMBL_ID
TIGR_ID
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GO_ID
SEQUENCE

Data table
ID NAME CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE-NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
A_23_P100001 NM_207446 FALSE NM_207446 NM_207446 400451 LOC400451 hypothetical gene supported by AK075564; BC060873 Hs.27373 ENST00000327355 THC2295302 ref|NM_207446|ens|ENST00000327355|gb|CR606671|gb|AK075564 chr15:90961852-90961793 hs|15q26.1 "Homo sapiens hypothetical gene supported by AK075564; BC060873 (LOC400451), mRNA [NM_207446]" ATCTCATGGAAAAGCTGGATTCCTCTGCCTTACGCAGAAACACCCGGGCTCCATCTGCCA
A_23_P100056 NM_194272 FALSE NM_194272 NM_194272 348093 RBPMS2 RNA binding protein with multiple splicing 2 Hs.436518 ENST00000300069 THC2238587 ref|NM_194272|ens|ENST00000300069|gb|AK127873|gb|AK124123 chr15:62819428-62819369 hs|15q22.31 "Homo sapiens RNA binding protein with multiple splicing 2 (RBPMS2), mRNA [NM_194272]" CCCTGTCAGATAAGTTTAATGTTTAGTTTGAGGCATGAAGAAGAAAAGGGTTTCCATTCT
A_23_P100074 NM_020371 FALSE NM_020371 NM_020371 57099 AVEN "apoptosis, caspase activation inhibitor" Hs.555966 ENST00000306730 THC2247974 ref|NM_020371|ens|ENST00000306730|gb|CR618548|gb|CR619789 chr15:31946031-31945972 hs|15q14 "Homo sapiens apoptosis, caspase activation inhibitor (AVEN), mRNA [NM_020371]" GO:0005515(protein binding)|GO:0005622(intracellular)|GO:0005624(membrane fraction)|GO:0006915(apoptosis)|GO:0006916(anti-apoptosis) GACCAGCCAGTTTACAAGCATGTCTCAAGCTAGTGTGTTCCATTATGCTCACAGCAGTAA
A_23_P100092 NM_152455 FALSE NM_152455 NM_152455 146050 ZNF690 zinc finger protein 690 Hs.418287 ENST00000267817 THC2239235 ref|NM_152455|gb|BC109270|gb|AK122788|gb|AK093377 chr15:41440680-41440621 hs|15q15.3 "Homo sapiens zinc finger protein 690 (ZNF690), mRNA [NM_152455]" "GO:0003700(transcription factor activity)|GO:0005622(intracellular)|GO:0005634(nucleus)|GO:0006350(transcription)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)" AGAGAAACCCTATGGGTGTCATGACTGTGGTAAGTGCTTCAGTAAAAGCTCTGCCCTTAA
A_23_P100111 NM_007236 FALSE NM_007236 NM_007236 11261 CHP calcium binding protein P22 Hs.406234 ENST00000334660 THC2309687 ref|NM_007236|ens|ENST00000334660|gb|BC051815|gb|BC031293 chr15:39358845-39358904 hs|15q15.1 "Homo sapiens calcium binding protein P22 (CHP), mRNA [NM_007236]" GO:0005509(calcium ion binding)|GO:0006813(potassium ion transport)|GO:0007264(small GTPase mediated signal transduction)|GO:0015459(potassium channel regulator activity) TAGAACAGAAAATGAGCATCCGATTTCTTCACTAAAGGAGACCAAACTGTTCCTTGCGGT
A_23_P100127 NM_170589 FALSE NM_170589 NM_170589 57082 CASC5 cancer susceptibility candidate 5 Hs.181855 ENST00000346991 THC2238819 ref|NM_170589|ref|NM_144508|gb|AF248041|ens|ENST00000346991 chr15:38704817-38704876 hs|15q15.1 "Homo sapiens cancer susceptibility candidate 5 (CASC5), transcript variant 1, mRNA [NM_170589]" GO:0001669(acrosome)|GO:0001675(acrosome formation)|GO:0005634(nucleus) CGGTCTCTAGCAAAGATTCAGGCATTGGATCTGTTGCAGGTAAACTGAACCTAAGTCCTT
A_23_P100133 NM_015251 FALSE NM_015251 NM_015251 23300 ASCIZ ATM/ATR-Substrate Chk2-Interacting Zn2+finger protein Hs.16349 ENST00000299575 THC2244254 ref|NM_015251|ens|ENST00000299575|gb|AB007891|gb|CR749457 chr16:79636596-79636655 hs|16q23.2 "Homo sapiens ATM/ATR-Substrate Chk2-Interacting Zn2+finger protein (ASCIZ), mRNA [NM_015251]" TGGACCTTCGTCAGCTTTGACACCTCTTTTCTGATTTAAAGACACCAAGGAAAACTACAA
A_23_P100177 NM_002428 FALSE NM_002428 NM_002428 4324 MMP15 matrix metallopeptidase 15 (membrane-inserted) Hs.80343 ENST00000219271 THC2314521 ref|NM_002428|gb|BC036495|gb|CR596713|ens|ENST00000219271 chr16:56637027-56637086 hs|16q13 "Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA [NM_002428]" ############################################################################################################################################################################################################################################################### GACCATTTGTTTCTGTTTCCCCGACTGGGGCAGGGTGTTTAGAATTTTCTAAATGTAGTT
A_23_P10025 NM_006159 FALSE NM_006159 NM_006159 4753 NELL2 NEL-like 2 (chicken) Hs.505326 ENST00000333837 THC2257000 ref|NM_006159|ens|ENST00000333837|gb|CR598058|gb|CR606928 chr12:43188763-43188704 hs|12q12 "Homo sapiens NEL-like 2 (chicken) (NELL2), mRNA [NM_006159]" GO:0005198(structural molecule activity)|GO:0005509(calcium ion binding)|GO:0005576(extracellular region)|GO:0007155(cell adhesion) ACATCACCATGTAGAAGAATGGGCGTACAGTATATACCGTGACATCCTGAACCCTGGATA
A_23_P100341 NM_014321 FALSE NM_014321 NM_014321 23594 ORC6L "origin recognition complex, subunit 6 like (yeast)" Hs.49760 ENST00000219097 THC2236284 ref|NM_014321|ens|ENST00000219097|gb|CR619046|gb|CR604421 chr16:45289505-45289564 hs|16q11.2 "Homo sapiens origin recognition complex, subunit 6 like (yeast) (ORC6L), mRNA [NM_014321]" GO:0003677(DNA binding)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005664(nuclear origin of replication recognition complex)|GO:0006260(DNA replication) GTGACAGAGCGAGACTTATCTCATAAATAAATAGATAGATACTCCAGCCTGGGTGACAGA
A_23_P100344 NM_014321 FALSE NM_014321 NM_014321 23594 ORC6L "origin recognition complex, subunit 6 like (yeast)" Hs.49760 ENST00000219097 THC2236284 ref|NM_014321|ens|ENST00000219097|gb|BC050725|gb|CR619046 chr16:45289020-45289079 hs|16q11.2 "Homo sapiens origin recognition complex, subunit 6 like (yeast) (ORC6L), mRNA [NM_014321]" GO:0003677(DNA binding)|GO:0005515(protein binding)|GO:0005634(nucleus)|GO:0005664(nuclear origin of replication recognition complex)|GO:0006260(DNA replication) ACATTCCAAACTGATAGTACATTGCCATCTCCAGGAAGACTTGACGGCTTTGGGATTTTG
A_23_P100392 NM_007108 FALSE NM_007108 NM_007108 6923 TCEB2 "transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)" Hs.172772 ENST00000262306 THC2251253 ref|NM_007108|ref|NM_207013|ens|ENST00000262306|gb|BC013306 chr16:2761590-2761531 hs|16p13.3 "Homo sapiens transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) (TCEB2), transcript variant 1, mRNA [NM_007108]" ############################################################################################################################################################################################################################################################### CAGACGATGGCCAAGAGCAGAAACACAAGCTGGAGCCAGTGTCCTGGTTTGACAGCATGT
A_23_P100408 NM_006181 FALSE NM_006181 NM_006181 4917 NTN2L netrin 2-like (chicken) Hs.158336 ENST00000293973 THC2242378 ref|NM_006181|ens|ENST00000293973|gb|U86759|thc|THC2242378 chr16:2462819-2462878 hs|16p13.3 "Homo sapiens netrin 2-like (chicken) (NTN2L), mRNA [NM_006181]" GO:0005554(molecular function unknown)|GO:0005578(extracellular matrix (sensu Metazoa))|GO:0007411(axon guidance)|GO:0008372(cellular component unknown) CACTGCCACTACTGCCGGGAGGGCTTCTATCGAGACCCTGGCCGTGCCCTGAGTGACCGT
A_23_P100420 NM_015144 FALSE NM_015144 NM_015144 23174 ZCCHC14 "zinc finger, CCHC domain containing 14" Hs.156231 ENST00000268616 THC2258059 ref|NM_015144|gb|BC028304|gb|AB030243|ens|ENST00000268616 chr16:85997692-85997633 hs|16q24.2 "Homo sapiens zinc finger, CCHC domain containing 14 (ZCCHC14), mRNA [NM_015144]" GO:0003676(nucleic acid binding)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding) GCTTTGGTACTGAAACTGGACACCTTGTGTACTCGATACCTTCACAGCTTCTATTGGACA
A_23_P100469 NM_017853 FALSE NM_017853 NM_017853 54957 TXNL4B thioredoxin-like 4B Hs.134406 ENST00000268483 THC2318067 ref|NM_017853|ens|ENST00000268483|gb|CR457240|gb|AY566808 chr16:70680518-70680459 hs|16q22.2 "Homo sapiens thioredoxin-like 4B (TXNL4B), mRNA [NM_017853]" "GO:0000398(nuclear mRNA splicing, via spliceosome)|GO:0005634(nucleus)|GO:0005681(spliceosome complex)|GO:0007049(cell cycle)|GO:0007067(mitosis)|GO:0009055(electron carrier activity)|GO:0015035(protein disulfide oxidoreductase activity)" CTTAAGTAAAATGGCTGCTATATACCTGGTAGATGTGGACCAAACTGCAGTTTATACACA
A_23_P100478 NM_032188 FALSE NM_032188 NM_032188 84148 MYST1 MYST histone acetyltransferase 1 Hs.533803 ENST00000219797 THC2237160 ref|NM_032188|gb|AK021872|gb|BC037773|ens|ENST00000219797 chr16:31046907-31048843 hs|16p11.2 "Homo sapiens MYST histone acetyltransferase 1 (MYST1), mRNA [NM_032188]" ############################################################################################################################################################################################################################################################### GATCTACCGCAAGAGCAACATCTCCGTGCACGAAGTTGATGGCAAAGACCATAAGATTTA
A_23_P100486 NM_206824 FALSE NM_206824 NM_206824 79001 VKORC1 "vitamin K epoxide reductase complex, subunit 1" Hs.324844 THC2264027 ref|NM_206824|ref|NM_024006|gb|AF176924|gb|CR623242 chr16:31009934-31009875 hs|16p11.2 "Homo sapiens vitamin K epoxide reductase complex, subunit 1 (VKORC1), transcript variant 2, mRNA [NM_206824]" GO:0005783(endoplasmic reticulum)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016491(oxidoreductase activity)|GO:0047057(vitamin-K-epoxide reductase (warfarin-sensitive) activity) GACCTCATCTGCTTTGCTTTGGCATGTGAGCCTTGCCTAAGGGGGCATATCTGGGTCCCT
A_23_P100501 NM_002134 FALSE NM_002134 NM_002134 3163 HMOX2 heme oxygenase (decycling) 2 Hs.284279 ENST00000219700 THC2256377 ref|NM_002134|ens|ENST00000219700|gb|D21243|gb|CR603198 chr16:4499723-4499782 hs|16p13.3 "Homo sapiens heme oxygenase (decycling) 2 (HMOX2), mRNA [NM_002134]" GO:0004392(heme oxygenase (decyclizing) activity)|GO:0005506(iron ion binding)|GO:0005783(endoplasmic reticulum)|GO:0005792(microsome)|GO:0006788(heme oxidation)|GO:0009055(electron carrier activity)|GO:0046872(metal ion binding) CTAGCTGCTGGACTCTTGGCCTGGTACTACATGTGAAGCACCCATCATGCCACACCGGTA
A_23_P100517 NM_145254 FALSE NM_145254 NM_145254 124491 LOC124491 LOC124491 Hs.487510 ENST00000357613 THC2288066 ref|NM_145254|ens|ENST00000357613|gb|BC018082|gb|BQ189798 chr16:74039009-74038950 hs|16q23.1 "Homo sapiens LOC124491 (LOC124491), mRNA [NM_145254]" AGACATTTTGCGTCTTGGTGGTCTCCTTTTTACGGATTTTAGCTACTCTATAGCATACAT
A_23_P100576 NM_002795 FALSE NM_002795 NM_002795 5691 PSMB3 "proteasome (prosome, macropain) subunit, beta type, 3" Hs.82793 ENST00000225426 THC2339470 ref|NM_002795|ens|ENST00000225426|gb|D26598|gb|CR607993 chr17:34165715-34170214 hs|17q12 "Homo sapiens proteasome (prosome, macropain) subunit, beta type, 3 (PSMB3), mRNA [NM_002795]" GO:0004298(threonine endopeptidase activity)|GO:0005634(nucleus)|GO:0005829(cytosol)|GO:0005839(proteasome core complex (sensu Eukaryota))|GO:0006511(ubiquitin-dependent protein catabolism) AGATCAAACCTTATACCCTCATGAGCATGGTGGCCAACCTCTTGTATGAGAAACGGTTTG

Total number of rows: 13989

Table truncated, full table size 6451 Kbytes.




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