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Platform GPL9477 Query DataSets for GPL9477
Status Public on Dec 31, 2010
Title JCVI PFGRC Salmonella typhimurium 6K version 2
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Manufacturer PFGRC
Manufacture protocol Spot replicates -Some genes are printed 2X, 4X and 6X.
Support glass
Coating aminosilane
 
Description Microarray: Version 2
Number of Grids: 48
Oligonucleotides Designed: 6780
Replicate Oligo Printings: 2x, 4X, 6X
 
Contributor(s) Jesudhasan PR, Pillai SD
Submission date Oct 21, 2009
Last update date Dec 31, 2010
Contact name Palmy R Jesudhasan
E-mail(s) palmy.jesudhasan@utsouthwestern.edu
Phone 214-648-5627
Organization name University of Texas Southwestern Medical Center
Department Microbiology
Street address NL4.110M
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 

Data table header descriptions
ID
Name A unique identifier for the 70mer oligo at the spot
ORF A name which identifies the target for which the oligo was designed.
common_name The common name of the design target
SPOT_ID

Data table
ID Name ORF common_name SPOT_ID
1 NTORF0002 STM0002 aspartokinase I , bifunctional enxyme N-terminal is
2 NTORF0003 STM0003 homoserine kinase
3 NTORF0004 STM0004 threonine synthase
4 NTORF0005 STM0005 putative cytoplasmic protein
5 NTORF0006 STM0006 putative AGCS family, alanine/glycine transport protein
6 NTORF0007 STM0007 transaldolase B
7 NTORF0008 STM0008 putative molybdochetalase in molybdopterine biosynthesis
8 NTORF0009 STY0009 conserved hypothetical protein
9 NTORF0010 STM0010 positive regulator for sigma H (sigma 32)
10 NTORF0011 STM0011 putative periplasmic protein
11 NTORF0012 STM0012 chaperone Hsp70 in DNA biosynthesis/cell division
12 NTORF0013 STM0013 heat shock protein, DnaJ and GrpE stimulates
13 NTORF0014 STM0014 putative transcriptional regulator, LysR family
14 NTORF0015 STM0015 putative bacteriophage protein
15 NTORF0016 STM0016 putative protein
16 NTORF0017 STM0017 putative protein
17 NTORF0018 STM0018 putative exochitinase
18 NTORF0019 STM0019 putative hydroxymethyltransferase
19 NTORF0020 STM0020 putative cytoplasmic protein
20 NTORF0021 STM0021 fimbrial subunit

Total number of rows: 5390

Table truncated, full table size 323 Kbytes.




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Supplementary data files not provided
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