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Platform GPL9553 Query DataSets for GPL9553
Status Public on Nov 11, 2009
Title URGV Arabidopsis thaliana 34.6K CATMA_v5
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer URGV (plant Genomic Research Unit)
Manufacture protocol A.thaliana genes were predicted with Eugene software (Foissac S. et al., Nucleic Acids Res., 2003) and gene-specific sequence tags were automatically designed (Thareau et al. Bioinformatics, 2003 Nov 22). Two rounds of PCR were performed and PCR products were finally purified and dissolved in 50% DMSO in TE at concentrations ranging between 50-200ng/ul and re-arrayed in 1536 microtiter plates. The pins are washed in 0.1% SDS at 50 degre Celsius then three times in bi-distilled water. Spotter settings are 45-55% humidity, and a pitch = 180 um. The room temperature is set between 19 and 21 °s Celsius and below 40 % humidity. The microtiter plates are placed in the biobank. The four trays are cleaned and 100-120 slides placed on them (30 slides per tray). The spotting lasts 25 hours. The slides are stored in the dark in a dry-cabinet for 3 days and UV-cross-linked at 300 mJ. After crosslinking, the slides are stored in the dark in a dry-cabinet.This array design contains:
- 32626 Gene Specific Tags (GST)
- 44 Non Protein Coding (NPC)
- 1263 microRNA precursors.
Support glass
Coating aminosilane
 
Description Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divide into 3 metablocks, each containing 64 blocks of 196 spots (14x14).
 
Web link http://urgv.evry.inar.fr/CATdb
Contributor(s) Renou JJ, Soubigou LL, Pelletier SS, Aubourg SS, Brunaud VV, Thareau VV, Hilson PP, Voinnet OO
Citation(s) 17940091
Submission date Nov 10, 2009
Last update date May 28, 2013
Contact name Soubigou-Taconnat Ludivine
E-mail(s) soubigou@evry.inra.fr
Organization name INRA
Department URGV
Lab ADT
Street address 2 rue gaston crémieux
City evry
ZIP/Postal code 91000
Country France
 
Samples (1886) GSM469732, GSM469733, GSM469734, GSM469735, GSM469736, GSM469737 
Series (98)
GSE18976 Analysis of deferoxamine treated leaves and roots: Arabidopsis transcriptome in response to deferoxamine
GSE19077 mutant comparison - characterisation of wat1 mutant
GSE19081 ralstonia infection-characterisation of wat1 mutant

Data table header descriptions
ID
SPOT_ID Probe name at CATdb
SEQUENCE Corresponding DNA sequence on genome

Data table
ID SPOT_ID SEQUENCE
1 C001 GAACGACGGGAATTGAACCCGCGATGGTGAATTCACAATCCACTGCCTTAATCCACTTGGCTACATCCGCCCCTACGCTACTATCTATTCTTTTTTGTATTGTCTAAAAAAAAAAAAAAATACAAATTTCAATAAAAAATAAAAAAAGGTAGCAAATTCCACCTTATTTTTTTTCTAATAAAAAATATATAGTAATTTTTTATTATTTATTATTATTATTTATTATTAATATAATAAATAAAGTAAAATATGATACTCTATAAAAATTTGCTCATTTTTATAGAAAAAAACGAGTAATATAAGCCCTCTTTCTTATTTAAAGAAGGCTTATATTGCTCGTTTTTTACTAAACTAGATCTAGACTAACACTAACGAATTATCCATTTGTAGATGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAA
2 C002 TGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATC
3 C003 TCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATAATCAGGGACTCCCAAGCGCACAAATTCTCTAAGTAGATAATTGAGAGCTTGTTATGAAACAGTATAACATGACTTATATAGCCATGTCAACCAATGTAAAATGGATAAGATCCTTTTAGTTTAGATTCATAAAAAATTTTTTGTAATCGATGAAATAAATTAGAAGCGAATCCACATACATAGAAATAGAATTGCTCTAGGAATATTTTTTCCAAATCATATGAATACGATTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGAT
4 C004 TTGAATACGATCCGTAGTGGGTTGCCCGGGACTCGAACCCGGAACTAGTCGGATGGAGTAGATAATCTCCTTGTTAAAATGAAAAAAAAAAGGTAAAAAACCCCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACAGCTTTCTCTATGTATACATAGAAAACTCAATTTCTTTGGTTCCTTATAAATAGGACTCCAAATTCAATACTCAGTAAATTTAATCGTAGTCTTACTGTATGAACATTTAATAATAGAAATAAAGCACTTTTGATAATAAAAAATAATTGATTTTTTTTGTTATCTCTGCATAAATTTTAATAAATTTCGATTTCATTTATGGGGTCTCAGAACCCAATTATTCATGATTGACCAAATCATTAAGATAAAGAATATCCAAATACCAAATTCGCACTCGATATAATCTTTTAGAAGCATAATAACTTCTTGGGAAGATTAAAGAAAGAACTTGGTCTTCCC
5 C005 TTTCTAGCATTTGACTACGTACCACTAAAGGGTTTAATCGCAAACTTGACAGATAACCCAGAAACTCTAAATTATCTTTAGATAATTGATTTATATTGACCTTTTGCGATTGAAACCATACCGAAAAATAACATTGCCATAAATTAACAAAATAATATTTCCATTTATTCATCAGAAGCGGCGTATCCTTTGTTGCCAGAATGCATCTTCCGTGATATCTAACATAATGTATGAAAGGATCCTTGAGCAACCCTAGGATTGCCGGAAAATTATTAACAAAAACTTTGAAAAAATGGTGTATTTTTCCATAGAATACAATTCGCTCAAAAAGGACTTCATAAGATGTCGATCGTAAATGCGAAGACCGCTTGCGTAGAAAAAAAAAGATGGATTCGTATTCACATACA
6 C006 GGTTCACATCCTTAGTGGGAATAATCAAACGATTCTGTTCATACATTCGCAAAATTAAGCGTTTCGTAATTAGTGAACTATATTTTTTGTCATAATCCGCATTTTCCAAGAAAATATAGCGATTTCTATTTAATCTATTTAAACCATGATCATAAGCAAGTACATAAATATACTCCCGAAAAAAAAGTGGATATAGAAAACTCTGTTGCCGAGCCCCATCGAACTCTAAATATCCTTGAAATTTATCCATTTGGATTGAAATTCGATTTGAACTGAAGGTAAAGTCTTTATTTTCTTGAGTTCTGAAATGACACATAGTGCGATACAGTCAAAATAAGGTATTAGACTACGAAAGCTATAGATATAGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTT
7 C007 AGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTTTAATAGGTTTCTGTTCGTTATATTATAGAATAACAAAACAAGATTATTAGAAATCCTTTATTTTTTTAACCTAATCGCTCTTTTGATTTTGGAAATATATATATTTTTTATCAATATACTGCTTCTTTTACACACTCCAACCTAATCCAAATGGACTAGTTAAAACAATAATTAGGACTCATGAAAAAATTGATAATAACACGCAAGAAAAAAATGCCTTCCCATACCCGTATTAGGCACTAATCTATTTTTAACATTTAATTAGTTGGGGTAATTTTTCAAATTACGAATGGAAGCTCGTTTCTTTTTTTTTCCTGGAATAAGGAAAACTGGTTTTTTTATCCATCCATTTATATTTATTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCA
8 C008 TTCACTTGACCCAAATTGGAATTCTTTTTTTTTTTTCGACATCAAAATAAGATTGTACCGATCAGGAAAGCAAAAAAAAATGTTATCTGAATTCTCCCTTGATACGACATGCTATTTTTTCCATTCATTCCTTTCAGGATCAGTCGTGGTCTTACAAACTCTACCGCAGATCTGGACGAATCCTTTTCTTCATACAAATGTGTAAAAGATGCTAGTCGCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCCCCCCAAAAAAAAAAGAACGTACTGCAAATATGTAGATACAATCAGAATAAAGAAAAAAATACAGTCGTGTGTGCGTCAGGGATAAATAGATCCATTTATCTATGAGAGAATTATATTTGGTCCATACACTGTTGTCAATATGATTATGAATTTTTCATATAGTCAAAAGAATAGAAAAAATAAATAAATAAAAAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGA
9 C009 AAAGCTTAACCTCTTGGTTCATTAGTTCATACAATGAATGAAAACTAAGCCAGTTCCAGTTAAGGTAATCTCAAATCTTTTTATACTTTTTAGATCCATTTTTTTTATGGCCTTTAATTTTTTATTTTTTTATGATGAAGAAATTATTCATAATAATATAATATTATTATAATATAATAATATATATATATTTTTTTTTATTCAGAATTATATATTATATTTATATACAGTATTATTCTTTTCTATATAACAATAACAGTAAAATTTTGTATTTATAAAAAAATTCGAATTTATATACTCTAGATCCAAAAAATTTTTCATAAATTTGTGTATGATTATAAAACATAGTAGTTGTTAGCAAGGTATTTTTTAGTATTCGTACCTTAGGAGGAATACTAATAATAAATAGAAATTATAATAAATCAAAATAAATATGATGGAAGTGAAAGAGAAGAGTAGA
10 C010 AAATAAATATGATGGAAGTGAAAGAGAAGAGTAGATAAAATTTTATATCACGTTATATACGAGTCTTTCACATCCTCTTTTTTATATTTCATTAATTTCATTTCGTTTTAGTAAGACTTCATTCCGTAAAAATCCCAGCCTTCTTTGAAATATCATGAGCTGTTCTTGTTGGTTGAGCTCCTTTTTTAAGAAAATCGAGAATAGCAGAAAGGTTTAAAAAAGTTTGATTAGTTATGGGATCATAAAAACCCACCTTACTAAGATCTCTTCCTTCTCTTCGGTATCGAACATCAATTGCAAGGATTCGATAAACGGCTCGTTGGGATAGATGTATATGAATAATACCCCCCCTAGAAACGTATAAGAGGTTTTGGCCTCGTACGGCTCGAGAA
11 C011 TTTGGCCTCGTACGGCTCGAGAAAAAAAATTCAAATAGTAAATTCAAATATTAAATAGAGAAATAAAAACATTAAATCAATTAGCCAGTATTAAAACCCTAAATATTTTTTCCATAAAAAGCATTCATAACATTCGTACTCTCGTAACTCAAGTTAAACAACTCTCAAATATCTCACCGGAGAATCCTTAAGTACTTTTTTTATTGAGTAGTCTCTAGCCCTTTTTTTGTTTGTCTCATTGCAAATTTTAGAATCAATTTTGATTCTTCAGTTTGATCTAGTTTTTCAAACAATTGAAAACAGGATTTCCTTTTTTCAAGATTCTTTATCCTTACTTTGAATCTTTAGGTTTAGACATGACTTCGGTGATATTGAATCGTTTTATTAAAAAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAA
12 C012 AAAGGGCAGCAACAAGCCCCTTATTTTGTTTATGATTTCTGTTCTTTCTATACAAAGAATCATACAAACGCTTGATTCACGCATGATAGACTTTTGATTCAAAGAATTTTACAATTTTAAGAAAATTTCCTTTTCCATTGTAAAATTGCTTGAAAGGACTTTTTTCAATATAAAAAGACTTACGAAGTTGTTCCAACTTATTAATTCGCACTAACCCTAAATCCTTACTCCTGCGAAAGGACTAAAAACTTTCTATTCTCCTCGAGCTCCATCCTGTACTCTTTTTTATATTACAAAAAAGTGTAGGACTCTTGTAAAATAGAATACAAAATGTCGAGCCAAGAGCACCTATATTCCTAATATAAAAATAAAAGTGGCGGATGAAAAAATCCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCG
13 C013 CCACAGCAGATAATGTCCTTCAATTCAAGTCGTACGTTGCTTTCTACCACATCGTTTTAAACGAAGTTTTACCATAACATTCCTCTAGTTTGTGTAATTGATTCAATGATGGAATCATGAATAGTCATAGTTCAGTCAGTATATAATAATCTATACCTTTTCTTTCTCTATGAATGGAATAGTTTATTTACGCGTAAAGGTTCGGTCAGAATGAAAATGAATTCCATATTAGTTTGAATAGAAATCTATATTTATATATAAATAAATAAATATAGATTTTTTTATTAAAACTCTTAGAATCTGCGGTTCTACCTTACTTACCCGCATCACACAAATTAAAAAAGCAAATAGATTTTTTTTGAATTCGGTTGAAATAATGAAAAATTAAGTTTATTCTTCTTTTCATTTCAATATTTTATTCTTAAAAAATTTGGATTTTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTG
14 C014 TTTAAACAGAAAGAGAAAGATGGTGTACAAAGGCAATAGAAGATTGATTCTGTAATGACTGTACTCTGGGACGGAAGGATTCGAACCTCCGAATAGCGGGACCAAAACCCGTTGCCTTACCGCTTGGCTACGCCCCATTTCGCTTTTTATTCAAGACTACTAAAAGAGTAATATTCCTATTGGTTGTTCGTCAATTCAAAATGAAATATAGATTACATTGGTGCTAAAGTTTTAACACGTGTAGATAGCAAATAAAACTTACTTTATTGATCATTACATAGAATTCAATTAAGATATTGTATGAAAATATTATTTCTTTCATTCTCATAAGAGAATAAAAGGATTTTTGATTGAGTAAGTTCAACAAAGTCTTTTTAGACTATCTTTCTTTATTTTTTCCTTATATAAAAAATATATTAAAAACTCAATCAAAATTAAATTATCCACAAGAACACCAATTT
15 C015 AAATTAAATTATCCACAAGAACACCAATTTTTGTTATGCTTAATATATTTAATTTGATCTGTATTTTTTTTAATTCTACCCTTTTTTCAAGCACTTTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATGCCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTTCGATAAAATTCTTAATACTGTCTTAAACAAATTCACGATTTTGATTTTTCCAACAATTCAAAAGATCCAAAAAATCTTGACGTATGAACGAACTCTCAATTCAAACATTTAATTTTTTTGGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGA
16 C016 GGTAGCCATACTAAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCCCTAAATGAAAGAACCTAATTAGATTCAAGTTCACCAAAAAAATATCTAGATGTTGGTATGCAAATCTGTTTGAATATGAAAGATTCGACTATTATCTTAATTACAAATAACTTTCTGAAACCTTTTTTTTTATTGGTATCAAAATTAGATATTTGATATAAAAATAGAGAATCTATTCTCTTTTTTTTTAGTAAGATCTTGGAGATTGTGTAATGCTTACTCTCAAACTTTTTGTATACACTGTAGTTATATTCTTTGTTTCTCTCTTCATATTTGGATTCCTATCTAATGATCCAGGACGTAATCCGGGACGTGAAGAATAAAAAAGAAAGTTTTTTTATTGCTTTATTTAATTCGTGGAAATGCTCGAATTTTATTAGGATTTTATCTATTACACACCATCAAAAGGAGAAGGGGAAAGAGAGGGATTCGAACCC
17 C017 TCGAACCCTCGGTACGATTAACTCGTACAATGGATTAGCAATCCAACGCTTTAGTCCACTCAGCCATCTCTCCTAATCGAAAAGGGATATTTAATTAGGTTCCATAAAAAAAAAAAAAGGCTTGAAAAAGAACCTTCTCCACTTTATTCTTAAAAAGCTTTCTTTTTTTGTTATAGATATTCTTTATCTTTATATTATATATATATATATTTTTTTTCATTTTCTATATTTTTTTCTATATTTTATTATATTATTATATATATATATATTCTTTTTGATTATTTGATTATATAAATATATATATCCTATATTTAAATATATAATATATATATAATATATATCCTATATATAAATTATATAAATCCTCTATTATATATATAATATATATATAATATATATTATATAATATATATATTACTATTATATAACTGTTTTTATAGAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAA
18 C018 GAACTTTCTCAGCAATTCTAGTTACATTAAAAATTTAGCTAAAGATTAGATAAAAAAGGCGCGAACTCAAAAAAGAAATAAATAAAACCATAATCATAGAAATAGAGAATCCTTTTTTTATTTTGTCTCGTCAAAACAAAAACACAAGTAAAAGATCTTTTTTATTTTAATAGCCTGGCCTGGTCAGTCCCCAGCCGGGCCTTTTTTTGTTAAAATTAAAAAGACTCATCCGATGGATTTTTAGATAAAAAAAGATTTGAAATAAAAAAAAAAGTGGAATTGAATTCGCTTTTACTAATTTTCTTAAGTCAACTCTAGTTTTTTCTAAATTTTTTCAGATTTTTTTATTACACCCCCGATTACTTTGTTCGACAAAAGGTTAATTTATATGCAATAATTGCATTGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCCTTTAATCCCTTTAATAGTTAAAGGGTCTCTCGGTTTGATT
19 C019 CAATAATTGCATTGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGATTCGTTCCTTTAATCCCTTTAATAGTTAAAGGGTCTCTCGGTTTGATTAATCTTCCGATCAAAAATTTTATTTCTTAAAAGGATTTAGTCCTTTCCCTTTCAATGAAAGATTCAAGGAAGATTATAGATTCTCGTAATTTATATCCAAAGACTCTAATCAATTGTAAATTTGGATTATGAAATTCCGAAACATAATTTTTGAATTGGATGACTATTTACAATTCAATAAGTATAACAAGAGGATCCATGGATAAAGCTAGAAAAGTGTCTTTCTAATCGTAACTAAATCTTCAGTTCTATTCATTGTTTGGTATAGAAAAATTGAAGCAAAATAGCTATTAAACGAGAACTTTGGTTTACTAAAGACATCGACATATTATATTG
20 C020 GAGAACTTTGGTTTACTAAAGACATCGACATATTATATTGTTTTAGCTCGGTAGAAACCAAATACTTTTCCTAAGGATTCCGTTAAATAGAAATAAAGAACGAAGTAACTAGAAAGATTGTTCGAGTTGGCCCGATCTATCTTCTAGAAGGATCATCTAGAAAGCAAAATTTTCTGTGAAAGTACCCAGACGGAAAAAAGCTCACATAGATGTTATGGGTCGAATTTTTATTTCGTTCCCGTCTTTTTTTATTTGGGAATTTCTCCATCCATCATAAAGGAGCCGAATGAAACCAAAGTTTCATGTTCGGTTTTGAATTAGAGACGTTAAAAATATAAAAATGATCAATCGACGTCGACTAAAACCCTTAGCCTTCCAAGCTAACGATGCGGGTTCGATTCCCGCTACCCGCTCTAAATTCACAATTGCC

Total number of rows: 34647

Table truncated, full table size 8352 Kbytes.




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