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Status
Public on Nov 17, 2009
Title
Plant and Food Arabidopsis thaliana AROS version 1.0
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Plant and Food, Auckland, New Zealand
Manufacture protocol
The array was produced by spotting the Arabidopsis thaliana AROS™ V1.0 genome set (Operon Biotechnologies, operon.com) onto epoxide coated glass slides (Corning 40044). Each of the 26,282 70mer oligonucleotides was spotted once. Oligos were resuspended in 150 mM NaPO4 Ph8.5 buffer, 0.0001% SDS and spotted using a BioRobotics MicroGridII using SMT-S75 silicon pins (Parallel Synthesis) at 23 C and 66% RH. In total, there were 26,880 probes on the array including controls (e.g. actin) which were arranged in a grid of 4x12 blocks with 576 spots per block (27,648 spots altogether).
Submission date
Nov 13, 2009
Last update date
Nov 17, 2009
Contact name
Claudia Voelckel
E-mail(s)
c.voelckel@massey.ac.nz Phone
+64 6 356 9099 7697
Organization name
Massey University
Department
Allan Wilson Centre for Molecular Ecology and Evolution
Street address
Riddet Road
City
Palmerston North
ZIP/Postal code
4442
Country
New Zealand
Samples (36)
GSM470450 , GSM470451 , GSM470452 , GSM470453 , GSM470454 , GSM470455
GSM470456 ,
GSM470457 ,
GSM470458 ,
GSM470459 ,
GSM470460 ,
GSM470461 ,
GSM470462 ,
GSM470463 ,
GSM470464 ,
GSM470465 ,
GSM470466 ,
GSM470467 ,
GSM470468 ,
GSM470469 ,
GSM470470 ,
GSM470471 ,
GSM470472 ,
GSM470473 ,
GSM470474 ,
GSM470475 ,
GSM470476 ,
GSM470477 ,
GSM470478 ,
GSM470479 ,
GSM470480 ,
GSM470481 ,
GSM470482 ,
GSM470483 ,
GSM470484 ,
GSM470485 Series (1)
GSE19017 Transcriptional signatures associated with species divergence in New Zealand Pachycladon (Brassicaceae)
Data table header descriptions ID Block_Column_Row
70mer_ID ID of the 70mer oligonucleotide
Block spot coordinate block
Row spot coordinate row
Column spot coordinate column
GB_ACC GenBank Accession number
Locus A. thaliana locus represented by the oligonucleotide if known
Description Gene description
SPOT_ID
Data table ID 70mer_ID Block Row Column GB_ACC Locus Description SPOT_ID 1_1_1
A020440_01
1
1
1
AY042872 At5g46430
60S ribosomal protein L32 (RPL32B)
1_1_2
A020440_01
1
1
2
AY042872 At5g46430
60S ribosomal protein L32 (RPL32B)
1_1_3
A020440_01
1
1
3
AY042872 At5g46430
60S ribosomal protein L32 (RPL32B)
1_1_4
A020440_01
1
1
4
AY042872 At5g46430
60S ribosomal protein L32 (RPL32B)
1_1_5
A001043_01
1
1
5
M21414 At1g64740
tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
1_1_6
A001043_01
1
1
6
M21414 At1g64740
tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
1_1_7
A001043_01
1
1
7
M21414 At1g64740
tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
1_1_8
A001043_01
1
1
8
M21414 At1g64740
tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana}
1_1_9
1
1
9
--no info
1_1_10
1
1
10
--no info
1_1_11
1
1
11
--no info
1_1_12
1
1
12
--no info
1_1_13
1
1
13
--no info
1_1_14
1
1
14
--no info
1_1_15
1
1
15
--no info
1_1_16
1
1
16
--no info
1_1_17
1
1
17
--no info
1_1_18
1
1
18
--no info
1_1_19
1
1
19
--no info
1_1_20
1
1
20
--no info
27648 3759 Kbytes .Supplementary data files not provided
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