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Platform GPL9673 Query DataSets for GPL9673
Status Public on Nov 19, 2009
Title Nimblegen Homo sapiens 400K custom HOX cluster array 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol http://nimblegen.com
Catalog number 2007-07-31_HG18_CW_ChIP
 
Description Spotted 50 mer oligos 400,000 features
 
Contributor(s) Woo CJ, Kingston RE
Submission date Nov 13, 2009
Last update date Nov 19, 2009
Contact name Peter Kharchenko
Organization name Harvard Medical School
Department DBMI
Lab Kharchenko
Street address 10 Shattuck St.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (10) GSM470914, GSM470916, GSM470917, GSM470918, GSM471427, GSM471428 
Series (1)
GSE19046 A Region of Human HoxD that Confers Polycomb-Group Responsiveness

Data table header descriptions
ID
Chromosome chromosome name
RANGE_START start of the probe sequence on the hg18 assembly
RANGE_END stop of the probe sequence on the hg18 assembly
RANGE_STRAND strand from which the probe sequence was designed
SEQUENCE tiled sequence
RANGE_GB GenBank accession number
SPOT_ID

Data table
ID Chromosome RANGE_START RANGE_END RANGE_STRAND SEQUENCE RANGE_GB SPOT_ID
CHR12FS007814674_FORWARD2 chr12 7814674 7814724 + CATGTTGGTTAGGCTGATCTCGAACTCCCAACCTCAGGTGATCCACCAGC NC_000012.10
CHR02FS176744186_FORWARD2 chr2 176744186 176744236 + TCATGGCCTTTGGGTGGGTATGGGATGATGGACTAGGCTGCAGGGGAGAG NC_000002.10
CHR12_RS007739315_REVERSE2 chr12 7739315 7739365 - GGGCGTCCGCGGGAATGTACTTCGCTTTCTCCCAGACCAAGGTAAGGAAA NC_000012.10
CHR17FS044029185_FORWARD2 chr17 44029185 44029235 + CTCCAGATTCCCTCCTAGTCTCCTAGGCCTGTGCCGTCTGTCTAGACTCT NC_000017.9
CHR16FS060847442_FORWARD1 chr16 60847442 60847505 + TTAGTCCATCTTCCATTTCCATCTTCAGAGATAATGTGTGCTGTTAATTCCAGAGACTTCCTA NC_000016.8
CHR12FS007830535_FORWARD1 chr12 7830535 7830585 + AAGTCTCCCATCTTCATTTTGGTGGGATTTGGTCAGCTCCTTTACTGCAA NC_000012.10
CHR12FS052663346_FORWARD1 chr12 52663346 52663396 + GTTGGGTCCTCGTAAAAGGGAACGGTTTCGATCAAACTGGTGGGGAAAGA NC_000012.10
CHR03FS012374625_FORWARD2 chr3 12374625 12374686 + CTCCATTAGTTTGAGTAGCATTCATTGAATATCATTTGAATATTAATTTAAACATCATTTG NC_000003.10
CHR17_RS044011738_REVERSE2 chr17 44011738 44011788 - TGGAAATACTCGATTACCAAGGAGTGTTATTGTCTGTGTGGGTCACCTCT NC_000017.9
CHR02_RS176682491_REVERSE1 chr2 176682491 176682544 - GTACATTTCCCAAAGTTTAAATAACCTGCATTCACCGAAGAGGAAGGAAGGGA NC_000002.10
CHR08FS019867143_FORWARD1 chr8 19867143 19867197 + TGTGAAGAATGAAGTGGAGGAAGTAACTTTTACAAAACATACCCAGTGTTTGGG NC_000008.9
CHR17_RS043972752_REVERSE2 chr17 43972752 43972802 - AAAAATGCAGAGTTGGCTCTGCAGGAGAGAATTCCTATCCCCCATCATGG NC_000017.9
CHR17FS044074966_FORWARD2 chr17 44074966 44075016 + CCCGGCCACCTCCCTGTCGGGCAGACTTCCTGTTCTCCTGCTCACAGCAG NC_000017.9
CHR12_RS007795441_REVERSE1 chr12 7795441 7795491 - AGCAGTTGCAACCGGTTGCGAGTTGCTTTCTGTGCTGTGCAAGCTTTGTT NC_000012.10
CHR02FS176740830_FORWARD1 chr2 176740830 176740880 + TGTGCTGGATGTTAGGAACAGTAGACAAATGACACAGCCCCTGCCTGCAA NC_000002.10
CHR07FS027204995_FORWARD1 chr7 27204995 27205045 + CTGTTTTCTGGTCAATTTCTCATCCTTAAATTGGTGTCAGGGGCTGGGGA NC_000007.12
CHR05FS001344262_FORWARD2 chr5 1344262 1344312 + CTCACTCACCCTATACCTGGGAGGGACACCCAGGGACGGTGCCTCACTCA NC_000005.8
CHR07_RS027192330_REVERSE2 chr7 27192330 27192380 - CCTCTAAAGCAGCCCAAGGCTTGCCTCAATTGCATGGTTTCCCGAGTCCT NC_000007.12
CHR07FS027123825_FORWARD1 chr7 27123825 27123875 + TCAGGTCAGCCCCTAATCCTCCATCCCCTGCCTGAAAACACCGCCATCCT NC_000007.12
CHR17FS044101917_FORWARD1 chr17 44101917 44101968 + TCACCTTGTCCTTCTCAGCCTCTAGAACTCTGAGAAGTGTTTGTGGTTTAA NC_000017.9

Total number of rows: 386127

Table truncated, full table size 44749 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9673_2007_07_31_HG18_CW_ChIP.ndf.gz 21.5 Mb (ftp)(http) NDF
GPL9673_2007_07_31_HG18_CW_ChIP.pos.gz 1.2 Mb (ftp)(http) POS

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